Bhi09M002262 (mRNA) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi09M002262
Type	mRNA
Organism	Benincasa hispida (Wax gourd)
Description	protein HAPLESS 2 isoform X1
Location	chr9 : 72477892 .. 72478341 (-)
Sequence length	450

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATATGGACGTGTTTAGCTTCCTATTTCTATGCATGGGAGTACTGCTGCACTTTCATGTGTATCAAGCTTGCCAGTGTCAAAAGAACAAGAAGACGACACCTTAGGAGAAGAGACCTGGAAGAAGAGTTTGAAAGCGAAGAAGGAAAATGTCAACATGGGTCAACAAGCGACTCGAGCAATGTCCCTGAACATGTCGAGTCGAGAAGTAGCAGACGGGCATGTCGTCGATGGAGGAGGAACCACAGAAGTTCTCGAATGAGAAAATCGTTGAGGCCGAGAGGTCATGGAATTCGAGTAAGGAGTGGTAGAGTGCTGGTCTATGGTAAGCATAGAAGAAAATCTGTTGAGGTTGGGAATCATTTGAATGAGATACATAGCTTTGGGATGTATGGATCATCCAAATTTGTGCATAAAGAAAGAAAATACAGAAGAGAAAGCCAAAGATGA

mRNA sequence

ATGATATGGACGTGTTTAGCTTCCTATTTCTATGCATGGGAGTACTGCTGCACTTTCATGTGTATCAAGCTTGCCAGTGTCAAAAGAACAAGAAGACGACACCTTAGGAGAAGAGACCTGGAAGAAGAGTTTGAAAGCGAAGAAGGAAAATGTCAACATGGGTCAACAAGCGACTCGAGCAATGTCCCTGAACATGTCGAGTCGAGAAGTAGCAGACGGGCATGTCGTCGATGGAGGAGGAACCACAGAAGTTCTCGAATGAGAAAATCGTTGAGGCCGAGAGGTCATGGAATTCGAGTAAGGAGTGGTAGAGTGCTGGTCTATGGTAAGCATAGAAGAAAATCTGTTGAGGTTGGGAATCATTTGAATGAGATACATAGCTTTGGGATGTATGGATCATCCAAATTTGTGCATAAAGAAAGAAAATACAGAAGAGAAAGCCAAAGATGA

Coding sequence (CDS)

ATGATATGGACGTGTTTAGCTTCCTATTTCTATGCATGGGAGTACTGCTGCACTTTCATGTGTATCAAGCTTGCCAGTGTCAAAAGAACAAGAAGACGACACCTTAGGAGAAGAGACCTGGAAGAAGAGTTTGAAAGCGAAGAAGGAAAATGTCAACATGGGTCAACAAGCGACTCGAGCAATGTCCCTGAACATGTCGAGTCGAGAAGTAGCAGACGGGCATGTCGTCGATGGAGGAGGAACCACAGAAGTTCTCGAATGAGAAAATCGTTGAGGCCGAGAGGTCATGGAATTCGAGTAAGGAGTGGTAGAGTGCTGGTCTATGGTAAGCATAGAAGAAAATCTGTTGAGGTTGGGAATCATTTGAATGAGATACATAGCTTTGGGATGTATGGATCATCCAAATTTGTGCATAAAGAAAGAAAATACAGAAGAGAAAGCCAAAGATGA

Protein sequence

MIWTCLASYFYAWEYCCTFMCIKLASVKRTRRRHLRRRDLEEEFESEEGKCQHGSTSDSSNVPEHVESRSSRRACRRWRRNHRSSRMRKSLRPRGHGIRVRSGRVLVYGKHRRKSVEVGNHLNEIHSFGMYGSSKFVHKERKYRRESQR

Homology

[Close]

BLAST of Bhi09M002262 vs. TrEMBL
Match: tr|A0A1S4DVV8|A0A1S4DVV8_CUCME (protein HAPLESS 2 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103487604 PE=4 SV=1)

HSP 1 Score: 197.2 bits (500), Expect = 2.6e-47
Identity = 105/149 (70.47%), Postives = 111/149 (74.50%), Query Frame = 0


Query: 1   MIWTCLASYFYAWEYCCTFMCIKLASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTSDSS 60
           MIWTCLASYFYAWEYCC+FMCIKLAS                             TSDSS
Sbjct: 90  MIWTCLASYFYAWEYCCSFMCIKLASVKRTRRRHVRRRDLEEEFESEEGKCQHESTSDSS 149

Query: 61  NVPEHVESRSSRRACRRWRRNHRSSRMRKSLRPRGHGIRVRSGRVLVYGKHRRKSVEVGN 120
           NV EHVESRSSR + RRWRRNH+ S+ RKSLRP+GHG+RVRSGRVLVYGKHRRKSVEVGN
Sbjct: 150 NVLEHVESRSSRWSSRRWRRNHKDSQKRKSLRPKGHGVRVRSGRVLVYGKHRRKSVEVGN 209

Query: 121 HLNEIHSFGMYGSSKFVHKERKYRRESQR 150
           H NEI SFGMYGSSKFVHKERKYRR  QR
Sbjct: 210 HSNEIDSFGMYGSSKFVHKERKYRRGRQR 238

[Close]

BLAST of Bhi09M002262 vs. TrEMBL
Match: tr|A0A1S3B9T1|A0A1S3B9T1_CUCME (uncharacterized protein LOC103487604 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103487604 PE=4 SV=1)

HSP 1 Score: 197.2 bits (500), Expect = 2.6e-47
Identity = 105/149 (70.47%), Postives = 111/149 (74.50%), Query Frame = 0


Query: 1   MIWTCLASYFYAWEYCCTFMCIKLASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTSDSS 60
           MIWTCLASYFYAWEYCC+FMCIKLAS                             TSDSS
Sbjct: 46  MIWTCLASYFYAWEYCCSFMCIKLASVKRTRRRHVRRRDLEEEFESEEGKCQHESTSDSS 105

Query: 61  NVPEHVESRSSRRACRRWRRNHRSSRMRKSLRPRGHGIRVRSGRVLVYGKHRRKSVEVGN 120
           NV EHVESRSSR + RRWRRNH+ S+ RKSLRP+GHG+RVRSGRVLVYGKHRRKSVEVGN
Sbjct: 106 NVLEHVESRSSRWSSRRWRRNHKDSQKRKSLRPKGHGVRVRSGRVLVYGKHRRKSVEVGN 165

Query: 121 HLNEIHSFGMYGSSKFVHKERKYRRESQR 150
           H NEI SFGMYGSSKFVHKERKYRR  QR
Sbjct: 166 HSNEIDSFGMYGSSKFVHKERKYRRGRQR 194

[Close]

BLAST of Bhi09M002262 vs. TrEMBL
Match: tr|A0A0A0L1V0|A0A0A0L1V0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G361810 PE=4 SV=1)

HSP 1 Score: 194.9 bits (494), Expect = 1.3e-46
Identity = 103/149 (69.13%), Postives = 110/149 (73.83%), Query Frame = 0


Query: 1   MIWTCLASYFYAWEYCCTFMCIKLASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTSDSS 60
           MIWTCLASYFYAWEYCC FMCIKLAS                             TSDS+
Sbjct: 90  MIWTCLASYFYAWEYCCGFMCIKLASVKRTRRRHVRRRDMEEEFEIEEGKCRHESTSDST 149

Query: 61  NVPEHVESRSSRRACRRWRRNHRSSRMRKSLRPRGHGIRVRSGRVLVYGKHRRKSVEVGN 120
           NV EHVES+SSRR  +RWRRNHR S+ RKSLRP+GHG+RVRSGRVLVYGKHRRKSVEVGN
Sbjct: 150 NVLEHVESKSSRRVSQRWRRNHRDSQRRKSLRPKGHGVRVRSGRVLVYGKHRRKSVEVGN 209

Query: 121 HLNEIHSFGMYGSSKFVHKERKYRRESQR 150
           HLNEI SFGMYGSSK+VHKERKYRR   R
Sbjct: 210 HLNEIDSFGMYGSSKYVHKERKYRRGRPR 238

[Close]

BLAST of Bhi09M002262 vs. TrEMBL
Match: tr|A0A2I4GL38|A0A2I4GL38_9ROSI (uncharacterized protein LOC109008837 OS=Juglans regia OX=51240 GN=LOC109008837 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 2.9e-06
Identity = 48/148 (32.43%), Postives = 71/148 (47.97%), Query Frame = 0


Query: 1   MIWTCLASYFYAWEYCCTFMCIKLASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTSDSS 60
           ++W C++S F+AWEYCC F+ +KL                                 D  
Sbjct: 90  IVWACISSCFHAWEYCCIFLWVKLHKLKRVNRTHLEEEFDTSEEEY-----------DDG 149

Query: 61  NVPEHVESRS---SRRACRRWRRNHRSSRMRKSLRPRGHGIRVRSGRVLVYGKHRRKSVE 120
           +   H+ SRS   ++    RW R+HR + +RK LRPR H I+V  GR  ++G  R  +++
Sbjct: 150 SFSYHM-SRSMDVNKSPSHRW-RSHRGAYLRKCLRPRSHRIQVAIGRDSIHG-GRGNAIK 209

Query: 121 VGNHLNEIHSFGMYGSSKFVHKERKYRR 146
              +   IH   +  +SKF HK RKYRR
Sbjct: 210 HWKNGTAIHDIRVTRTSKFAHKGRKYRR 223

[Close]

BLAST of Bhi09M002262 vs. TrEMBL
Match: tr|A0A1Q3BVD2|A0A1Q3BVD2_CEPFO (Uncharacterized protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_15429 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 2.9e-06
Identity = 46/144 (31.94%), Postives = 65/144 (45.14%), Query Frame = 0


Query: 1   MIWTCLASYFYAWEYCCTFMCIKLASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTSDSS 60
           ++W C+ S+F  W+ CCTF+  KL                                S S 
Sbjct: 90  ILWACMTSWFSIWKICCTFLWFKLT--MVKKRNRIDRRDFDQELSTSEEEFNDDHKSFSY 149

Query: 61  NVPEHVESRSSRRACRRWRRNHRSSRMRKSLRPRGHGIRVRSGRVLVYGKHRRKSVEVGN 120
           +VP +           RW R+HR S +RKSLRPR + ++V  GR      +RR S++   
Sbjct: 150 HVPRYRTMDMGMSPSHRW-RDHRESLLRKSLRPRSYHVQVGIGRDSSIHGYRRNSIK--- 209

Query: 121 HLNEIHSFGMYGSSKFVHKERKYR 145
           H   +H F +  +SKFV K RKYR
Sbjct: 210 HRRHVHDFRVTHTSKFVQKSRKYR 227

[Close]

BLAST of Bhi09M002262 vs. NCBI nr
Match: XP_008444189.1 (PREDICTED: protein HAPLESS 2 isoform X1 [Cucumis melo] >XP_016899850.1 PREDICTED: protein HAPLESS 2 isoform X1 [Cucumis melo])

HSP 1 Score: 197.2 bits (500), Expect = 3.9e-47
Identity = 105/149 (70.47%), Postives = 111/149 (74.50%), Query Frame = 0


Query: 1   MIWTCLASYFYAWEYCCTFMCIKLASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTSDSS 60
           MIWTCLASYFYAWEYCC+FMCIKLAS                             TSDSS
Sbjct: 90  MIWTCLASYFYAWEYCCSFMCIKLASVKRTRRRHVRRRDLEEEFESEEGKCQHESTSDSS 149

Query: 61  NVPEHVESRSSRRACRRWRRNHRSSRMRKSLRPRGHGIRVRSGRVLVYGKHRRKSVEVGN 120
           NV EHVESRSSR + RRWRRNH+ S+ RKSLRP+GHG+RVRSGRVLVYGKHRRKSVEVGN
Sbjct: 150 NVLEHVESRSSRWSSRRWRRNHKDSQKRKSLRPKGHGVRVRSGRVLVYGKHRRKSVEVGN 209

Query: 121 HLNEIHSFGMYGSSKFVHKERKYRRESQR 150
           H NEI SFGMYGSSKFVHKERKYRR  QR
Sbjct: 210 HSNEIDSFGMYGSSKFVHKERKYRRGRQR 238

[Close]

BLAST of Bhi09M002262 vs. NCBI nr
Match: XP_008444191.1 (PREDICTED: uncharacterized protein LOC103487604 isoform X2 [Cucumis melo])

HSP 1 Score: 197.2 bits (500), Expect = 3.9e-47
Identity = 105/149 (70.47%), Postives = 111/149 (74.50%), Query Frame = 0


Query: 1   MIWTCLASYFYAWEYCCTFMCIKLASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTSDSS 60
           MIWTCLASYFYAWEYCC+FMCIKLAS                             TSDSS
Sbjct: 46  MIWTCLASYFYAWEYCCSFMCIKLASVKRTRRRHVRRRDLEEEFESEEGKCQHESTSDSS 105

Query: 61  NVPEHVESRSSRRACRRWRRNHRSSRMRKSLRPRGHGIRVRSGRVLVYGKHRRKSVEVGN 120
           NV EHVESRSSR + RRWRRNH+ S+ RKSLRP+GHG+RVRSGRVLVYGKHRRKSVEVGN
Sbjct: 106 NVLEHVESRSSRWSSRRWRRNHKDSQKRKSLRPKGHGVRVRSGRVLVYGKHRRKSVEVGN 165

Query: 121 HLNEIHSFGMYGSSKFVHKERKYRRESQR 150
           H NEI SFGMYGSSKFVHKERKYRR  QR
Sbjct: 166 HSNEIDSFGMYGSSKFVHKERKYRRGRQR 194

[Close]

BLAST of Bhi09M002262 vs. NCBI nr
Match: XP_004142706.1 (PREDICTED: protein HAPLESS 2 isoform X1 [Cucumis sativus] >XP_011653780.1 PREDICTED: protein HAPLESS 2 isoform X1 [Cucumis sativus] >KGN54547.1 hypothetical protein Csa_4G361810 [Cucumis sativus])

HSP 1 Score: 194.9 bits (494), Expect = 2.0e-46
Identity = 103/149 (69.13%), Postives = 110/149 (73.83%), Query Frame = 0


Query: 1   MIWTCLASYFYAWEYCCTFMCIKLASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTSDSS 60
           MIWTCLASYFYAWEYCC FMCIKLAS                             TSDS+
Sbjct: 90  MIWTCLASYFYAWEYCCGFMCIKLASVKRTRRRHVRRRDMEEEFEIEEGKCRHESTSDST 149

Query: 61  NVPEHVESRSSRRACRRWRRNHRSSRMRKSLRPRGHGIRVRSGRVLVYGKHRRKSVEVGN 120
           NV EHVES+SSRR  +RWRRNHR S+ RKSLRP+GHG+RVRSGRVLVYGKHRRKSVEVGN
Sbjct: 150 NVLEHVESKSSRRVSQRWRRNHRDSQRRKSLRPKGHGVRVRSGRVLVYGKHRRKSVEVGN 209

Query: 121 HLNEIHSFGMYGSSKFVHKERKYRRESQR 150
           HLNEI SFGMYGSSK+VHKERKYRR   R
Sbjct: 210 HLNEIDSFGMYGSSKYVHKERKYRRGRPR 238

[Close]

BLAST of Bhi09M002262 vs. NCBI nr
Match: XP_011653781.1 (PREDICTED: uncharacterized protein LOC101218855 isoform X2 [Cucumis sativus])

HSP 1 Score: 194.9 bits (494), Expect = 2.0e-46
Identity = 103/149 (69.13%), Postives = 110/149 (73.83%), Query Frame = 0


Query: 1   MIWTCLASYFYAWEYCCTFMCIKLASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTSDSS 60
           MIWTCLASYFYAWEYCC FMCIKLAS                             TSDS+
Sbjct: 46  MIWTCLASYFYAWEYCCGFMCIKLASVKRTRRRHVRRRDMEEEFEIEEGKCRHESTSDST 105

Query: 61  NVPEHVESRSSRRACRRWRRNHRSSRMRKSLRPRGHGIRVRSGRVLVYGKHRRKSVEVGN 120
           NV EHVES+SSRR  +RWRRNHR S+ RKSLRP+GHG+RVRSGRVLVYGKHRRKSVEVGN
Sbjct: 106 NVLEHVESKSSRRVSQRWRRNHRDSQRRKSLRPKGHGVRVRSGRVLVYGKHRRKSVEVGN 165

Query: 121 HLNEIHSFGMYGSSKFVHKERKYRRESQR 150
           HLNEI SFGMYGSSK+VHKERKYRR   R
Sbjct: 166 HLNEIDSFGMYGSSKYVHKERKYRRGRPR 194

[Close]

BLAST of Bhi09M002262 vs. NCBI nr
Match: XP_022154011.1 (uncharacterized protein LOC111021352 [Momordica charantia])

HSP 1 Score: 156.8 bits (395), Expect = 5.9e-35
Identity = 107/149 (71.81%), Postives = 120/149 (80.54%), Query Frame = 0


Query: 1   MIWTCLASYFYAWEYCCTFMCIKLASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTSDSS 60
           M WTC+ASYFYAW+YCCTFMCIKL S    XXXXXXXXXXXXXXXXXXXXXXX      S
Sbjct: 97  MTWTCIASYFYAWDYCCTFMCIKLGSVKRTXXXXXXXXXXXXXXXXXXXXXXXGSXXXXS 156

Query: 61  NVPEHVESRSSRRACRRWRRNHRSSRMRKSLRPRGHGIRVRSGRVLVYGKHRRKSVEVGN 120
           +VPE +E RSS+RA RRWR NHR S+MRK+LRP+  GIRVRSGR LVYGKHRRKS EV N
Sbjct: 157 SVPERIELRSSQRASRRWRMNHRGSQMRKALRPKSRGIRVRSGRTLVYGKHRRKSSEVVN 216

Query: 121 HLNEIHSFGMYGSSKFVHKERKYRRESQR 150
            L EIHS G +GSSKFVH+E +Y+R  Q+
Sbjct: 217 RLGEIHSLGRHGSSKFVHEEIRYKRGRQK 245

The following BLAST results are available for this feature:

BLAST of Bhi09M002262 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Bhi09M002262 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Bhi09M002262 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S4DVV8\|A0A1S4DVV8_CUCME	2.6e-47	70.47	protein HAPLESS 2 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103487604 PE=4 SV=1	[more]
tr\|A0A1S3B9T1\|A0A1S3B9T1_CUCME	2.6e-47	70.47	uncharacterized protein LOC103487604 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A0A0L1V0\|A0A0A0L1V0_CUCSA	1.3e-46	69.13	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G361810 PE=4 SV=1	[more]
tr\|A0A2I4GL38\|A0A2I4GL38_9ROSI	2.9e-06	32.43	uncharacterized protein LOC109008837 OS=Juglans regia OX=51240 GN=LOC109008837 P...	[more]
tr\|A0A1Q3BVD2\|A0A1Q3BVD2_CEPFO	2.9e-06	31.94	Uncharacterized protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_15429 PE=4...	[more]

BLAST of Bhi09M002262 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008444189.1	3.9e-47	70.47	PREDICTED: protein HAPLESS 2 isoform X1 [Cucumis melo] >XP_016899850.1 PREDICTED...	[more]
XP_008444191.1	3.9e-47	70.47	PREDICTED: uncharacterized protein LOC103487604 isoform X2 [Cucumis melo]	[more]
XP_004142706.1	2.0e-46	69.13	PREDICTED: protein HAPLESS 2 isoform X1 [Cucumis sativus] >XP_011653780.1 PREDIC...	[more]
XP_011653781.1	2.0e-46	69.13	PREDICTED: uncharacterized protein LOC101218855 isoform X2 [Cucumis sativus]	[more]
XP_022154011.1	5.9e-35	71.81	uncharacterized protein LOC111021352 [Momordica charantia]	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Bhi09G002262	Bhi09G002262	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.Bhi09M002262	cds.Bhi09M002262	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Bhi09M002262.exon1	Bhi09M002262.exon1	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Bhi09M002262	Bhi09M002262-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 44..95
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 72..95
None	No IPR available	PANTHER	PTHR35278	FAMILY NOT NAMED	coord: 1..147
None	No IPR available	PANTHER	PTHR35278:SF1	F8K7.16	coord: 1..147