Bhi09M002177 (mRNA) Wax gourd

NameBhi09M002177
TypemRNA
OrganismBenincasa hispida (Wax gourd)
DescriptionNAD(P)H-quinone oxidoreductase subunit 2 A, chloroplastic
Locationchr9 : 70052285 .. 70052572 (+)
Sequence length288
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATAGATCACCCAGGTTCAGGTCCATAAGCAGTGACAATTGCCCCATGAATAACTCGCTTTCGCTACGGCTTCGGTGGGTTCCTTTAACCAAGCCACTGCCTATTGAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCAGAGTCCTGGTCTCTCTCACTTCTTGGAAGCTTACGGTTTCATGTTCTATTTCACTCCCCGATGGGGTTCTTTTCACCCTTCCCTCACGGTACTACTTCACTATCGGTCACCAGGAGTATAGCCTTGCAAGGTGGTCCTTGCTGA

mRNA sequence

ATGGATAGATCACCCAGGTTCAGGTCCATAAGCAGTGACAATTGCCCCATGAATAACTCGCTTTCGCTACGGCTTCGGTGGGTTCCTTTAACCAAGCCACTGCCTATTGAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCAGAGTCCTGGTCTCTCTCACTTCTTGGAAGCTTACGGTTTCATGTTCTATTTCACTCCCCGATGGGGTTCTTTTCACCCTTCCCTCACGGTACTACTTCACTATCGGTCACCAGGAGTATAGCCTTGCAAGGTGGTCCTTGCTGA

Coding sequence (CDS)

ATGGATAGATCACCCAGGTTCAGGTCCATAAGCAGTGACAATTGCCCCATGAATAACTCGCTTTCGCTACGGCTTCGGTGGGTTCCTTTAACCAAGCCACTGCCTATTGAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCAGAGTCCTGGTCTCTCTCACTTCTTGGAAGCTTACGGTTTCATGTTCTATTTCACTCCCCGATGGGGTTCTTTTCACCCTTCCCTCACGGTACTACTTCACTATCGGTCACCAGGAGTATAGCCTTGCAAGGTGGTCCTTGCTGA

Protein sequence

MDRSPRFRSISSDNCPMNNSLSLRLRWVPLTKPLPIESPAHSSTGTRSESWSLSLLGSLRFHVLFHSPMGFFSPFPHGTTSLSVTRSIALQGGPC
BLAST of Bhi09M002177 vs. TrEMBL
Match: tr|A0A287XQQ5|A0A287XQQ5_HORVV (Uncharacterized protein OS=Hordeum vulgare subsp. vulgare OX=112509 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 1.8e-09
Identity = 41/69 (59.42%), Postives = 48/69 (69.57%), Query Frame = 0

Query: 30 LTKPLPIESPAHSSTGTRSE-SWSLSLLGSLR-FHVLFHSPMGFFSPFPHGTTSLSVTRS 89
          L +    ESPAHSSTGTRSE ++    LG+   F   F +  GFFSPFPHGTTSLSVT+ 
Sbjct: 3  LNQATAYESPAHSSTGTRSEITFPSHCLGAQHGFTFYFTTHWGFFSPFPHGTTSLSVTQE 62

Query: 90 -IALQGGPC 96
           +ALQGGPC
Sbjct: 63 YLALQGGPC 71

BLAST of Bhi09M002177 vs. TrEMBL
Match: tr|A0A1J6KEC6|A0A1J6KEC6_NICAT (Putative ribonuclease h protein OS=Nicotiana attenuata OX=49451 GN=A4A49_64076 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 1.5e-08
Identity = 33/47 (70.21%), Postives = 34/47 (72.34%), Query Frame = 0

Query: 30 LTKPLPIESPAHSSTGTRSESWSLSLLGSLRFHVLFHSPMGFFSPFP 77
          L +    ESPAHSSTGTRSE W L LLGSLRFHVLFHSPMG     P
Sbjct: 4  LNQATAYESPAHSSTGTRSEPWLLPLLGSLRFHVLFHSPMGVLFTLP 50

BLAST of Bhi09M002177 vs. TrEMBL
Match: tr|A0A2G3AVP4|A0A2G3AVP4_CAPCH (Uncharacterized protein OS=Capsicum chinense OX=80379 GN=BC332_32776 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 2.2e-07
Identity = 32/47 (68.09%), Postives = 33/47 (70.21%), Query Frame = 0

Query: 30 LTKPLPIESPAHSSTGTRSESWSLSLLGSLRFHVLFHSPMGFFSPFP 77
          L +    ESPAHSSTGT SE W L LLGSLRFHVLFHSPMG     P
Sbjct: 7  LNQATAYESPAHSSTGTWSEPWLLPLLGSLRFHVLFHSPMGVLFILP 53

BLAST of Bhi09M002177 vs. TrEMBL
Match: tr|K2EG17|K2EG17_9ZZZZ (Uncharacterized protein OS=groundwater metagenome OX=717931 GN=ACD_20C00008G0002 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 2.2e-07
Identity = 41/81 (50.62%), Postives = 47/81 (58.02%), Query Frame = 0

Query: 16  PMNNSLSLRLRWVPLTKPLPIESPAHSSTGTRSESWSLSLLGSLRFHVLFHSP-MGFFSP 75
           P ++SLSLRLR   L       S  H + GTRS    L  L   RF VL HSP  G FSP
Sbjct: 48  PYSDSLSLRLRHFRLNLARKSNSLTHYAKGTRSHPKVLPPLVGNRFQVLLHSPNRGSFSP 107

Query: 76  FPHGTTSLSVTRS-IALQGGP 95
           FPHGT SLSV +  +AL+ GP
Sbjct: 108 FPHGTGSLSVAKEYLALEDGP 128

BLAST of Bhi09M002177 vs. TrEMBL
Match: tr|A0A0P6K0L2|A0A0P6K0L2_9CRUS (Uncharacterized protein OS=Daphnia magna OX=35525 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 2.9e-07
Identity = 43/97 (44.33%), Postives = 57/97 (58.76%), Query Frame = 0

Query: 1  MDRSPRFRSISSDNCPMNNSLSLRLRWVPLTKPLPIE--SPAHSSTGTRSESWSLSLLGS 60
          MDRS  F S  SD+ P ++S+SLRL   P +  L  E  S  H + GT+S+      L +
Sbjct: 1  MDRSLGFGSTPSDSTPYSDSISLRL---PYSVKLATECKSLTHYTKGTQSQFPGSDFLYA 60

Query: 61 LRFHVLFHSPMGFFSPFPHGTTSLSVTRS-IALQGGP 95
            F + F    GFFSPFPHGT SLSV++  +AL+ GP
Sbjct: 61 HGFRIYFTPLPGFFSPFPHGTGSLSVSQEYLALEDGP 94

BLAST of Bhi09M002177 vs. NCBI nr
Match: OIT27734.1 (putative ribonuclease h protein [Nicotiana attenuata])

HSP 1 Score: 67.8 bits (164), Expect = 2.3e-08
Identity = 33/47 (70.21%), Postives = 34/47 (72.34%), Query Frame = 0

Query: 30 LTKPLPIESPAHSSTGTRSESWSLSLLGSLRFHVLFHSPMGFFSPFP 77
          L +    ESPAHSSTGTRSE W L LLGSLRFHVLFHSPMG     P
Sbjct: 4  LNQATAYESPAHSSTGTRSEPWLLPLLGSLRFHVLFHSPMGVLFTLP 50

BLAST of Bhi09M002177 vs. NCBI nr
Match: EKE04739.1 (hypothetical protein ACD_20C00008G0002 [uncultured bacterium])

HSP 1 Score: 63.9 bits (154), Expect = 3.3e-07
Identity = 41/81 (50.62%), Postives = 47/81 (58.02%), Query Frame = 0

Query: 16  PMNNSLSLRLRWVPLTKPLPIESPAHSSTGTRSESWSLSLLGSLRFHVLFHSP-MGFFSP 75
           P ++SLSLRLR   L       S  H + GTRS    L  L   RF VL HSP  G FSP
Sbjct: 48  PYSDSLSLRLRHFRLNLARKSNSLTHYAKGTRSHPKVLPPLVGNRFQVLLHSPNRGSFSP 107

Query: 76  FPHGTTSLSVTRS-IALQGGP 95
           FPHGT SLSV +  +AL+ GP
Sbjct: 108 FPHGTGSLSVAKEYLALEDGP 128

BLAST of Bhi09M002177 vs. NCBI nr
Match: PHT98307.1 (hypothetical protein BC332_32776 [Capsicum chinense])

HSP 1 Score: 63.9 bits (154), Expect = 3.3e-07
Identity = 32/47 (68.09%), Postives = 33/47 (70.21%), Query Frame = 0

Query: 30 LTKPLPIESPAHSSTGTRSESWSLSLLGSLRFHVLFHSPMGFFSPFP 77
          L +    ESPAHSSTGT SE W L LLGSLRFHVLFHSPMG     P
Sbjct: 7  LNQATAYESPAHSSTGTWSEPWLLPLLGSLRFHVLFHSPMGVLFILP 53

BLAST of Bhi09M002177 vs. NCBI nr
Match: PPR91549.1 (hypothetical protein GOBAR_AA29149 [Gossypium barbadense])

HSP 1 Score: 63.5 bits (153), Expect = 4.3e-07
Identity = 35/66 (53.03%), Postives = 39/66 (59.09%), Query Frame = 0

Query: 11 SSDNCPMNNSLSLRLRWVPLTKPLPIESPAHSSTGTRSESWSLSLLGSLRFHVLFHSPMG 70
          S+D+    +SLSLRLRWVPLTKPLP+                L LLGSLRFHVLFHSP G
Sbjct: 31 SADSSTSVDSLSLRLRWVPLTKPLPMSRRLIVQQVRVQSPGLLPLLGSLRFHVLFHSPTG 90

Query: 71 FFSPFP 77
               P
Sbjct: 91 VLFTLP 96

BLAST of Bhi09M002177 vs. NCBI nr
Match: KNA10645.1 (hypothetical protein SOVF_142410 [Spinacia oleracea])

HSP 1 Score: 61.2 bits (147), Expect = 2.1e-06
Identity = 34/63 (53.97%), Postives = 36/63 (57.14%), Query Frame = 0

Query: 14 NCPMNNSLSLRLRWVPLTKPLPIESPAHSSTGTRSESWSLSLLGSLRFHVLFHSPMGFFS 73
          N    +SLSLRLRWVPLTKPLP+                L LL SLRFHVLFHSPMG   
Sbjct: 13 NLIYEDSLSLRLRWVPLTKPLPMSRRLILQQARGQGLVPLPLLESLRFHVLFHSPMGVLF 72

Query: 74 PFP 77
            P
Sbjct: 73 TLP 75

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A287XQQ5|A0A287XQQ5_HORVV1.8e-0959.42Uncharacterized protein OS=Hordeum vulgare subsp. vulgare OX=112509 PE=4 SV=1[more]
tr|A0A1J6KEC6|A0A1J6KEC6_NICAT1.5e-0870.21Putative ribonuclease h protein OS=Nicotiana attenuata OX=49451 GN=A4A49_64076 P... [more]
tr|A0A2G3AVP4|A0A2G3AVP4_CAPCH2.2e-0768.09Uncharacterized protein OS=Capsicum chinense OX=80379 GN=BC332_32776 PE=4 SV=1[more]
tr|K2EG17|K2EG17_9ZZZZ2.2e-0750.62Uncharacterized protein OS=groundwater metagenome OX=717931 GN=ACD_20C00008G0002... [more]
tr|A0A0P6K0L2|A0A0P6K0L2_9CRUS2.9e-0744.33Uncharacterized protein OS=Daphnia magna OX=35525 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
OIT27734.12.3e-0870.21putative ribonuclease h protein [Nicotiana attenuata][more]
EKE04739.13.3e-0750.62hypothetical protein ACD_20C00008G0002 [uncultured bacterium][more]
PHT98307.13.3e-0768.09hypothetical protein BC332_32776 [Capsicum chinense][more]
PPR91549.14.3e-0753.03hypothetical protein GOBAR_AA29149 [Gossypium barbadense][more]
KNA10645.12.1e-0653.97hypothetical protein SOVF_142410 [Spinacia oleracea][more]

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Bhi09G002177Bhi09G002177gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Bhi09M002177.exon1Bhi09M002177.exon1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
cds.Bhi09M002177cds.Bhi09M002177CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Bhi09M002177Bhi09M002177-proteinpolypeptide