Bhi09G002177 (gene) Wax gourd

NameBhi09G002177
Typegene
OrganismBenincasa hispida (Wax gourd)
DescriptionNAD(P)H-quinone oxidoreductase subunit 2 A, chloroplastic
Locationchr9 : 70052285 .. 70052572 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATAGATCACCCAGGTTCAGGTCCATAAGCAGTGACAATTGCCCCATGAATAACTCGCTTTCGCTACGGCTTCGGTGGGTTCCTTTAACCAAGCCACTGCCTATTGAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCAGAGTCCTGGTCTCTCTCACTTCTTGGAAGCTTACGGTTTCATGTTCTATTTCACTCCCCGATGGGGTTCTTTTCACCCTTCCCTCACGGTACTACTTCACTATCGGTCACCAGGAGTATAGCCTTGCAAGGTGGTCCTTGCTGA

mRNA sequence

ATGGATAGATCACCCAGGTTCAGGTCCATAAGCAGTGACAATTGCCCCATGAATAACTCGCTTTCGCTACGGCTTCGGTGGGTTCCTTTAACCAAGCCACTGCCTATTGAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCAGAGTCCTGGTCTCTCTCACTTCTTGGAAGCTTACGGTTTCATGTTCTATTTCACTCCCCGATGGGGTTCTTTTCACCCTTCCCTCACGGTACTACTTCACTATCGGTCACCAGGAGTATAGCCTTGCAAGGTGGTCCTTGCTGA

Coding sequence (CDS)

ATGGATAGATCACCCAGGTTCAGGTCCATAAGCAGTGACAATTGCCCCATGAATAACTCGCTTTCGCTACGGCTTCGGTGGGTTCCTTTAACCAAGCCACTGCCTATTGAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCAGAGTCCTGGTCTCTCTCACTTCTTGGAAGCTTACGGTTTCATGTTCTATTTCACTCCCCGATGGGGTTCTTTTCACCCTTCCCTCACGGTACTACTTCACTATCGGTCACCAGGAGTATAGCCTTGCAAGGTGGTCCTTGCTGA

Protein sequence

MDRSPRFRSISSDNCPMNNSLSLRLRWVPLTKPLPIESPAHSSTGTRSESWSLSLLGSLRFHVLFHSPMGFFSPFPHGTTSLSVTRSIALQGGPC
BLAST of Bhi09G002177 vs. TrEMBL
Match: tr|A0A287XQQ5|A0A287XQQ5_HORVV (Uncharacterized protein OS=Hordeum vulgare subsp. vulgare OX=112509 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 1.8e-09
Identity = 41/69 (59.42%), Postives = 48/69 (69.57%), Query Frame = 0

Query: 30 LTKPLPIESPAHSSTGTRSE-SWSLSLLGSLR-FHVLFHSPMGFFSPFPHGTTSLSVTRS 89
          L +    ESPAHSSTGTRSE ++    LG+   F   F +  GFFSPFPHGTTSLSVT+ 
Sbjct: 3  LNQATAYESPAHSSTGTRSEITFPSHCLGAQHGFTFYFTTHWGFFSPFPHGTTSLSVTQE 62

Query: 90 -IALQGGPC 96
           +ALQGGPC
Sbjct: 63 YLALQGGPC 71

BLAST of Bhi09G002177 vs. TrEMBL
Match: tr|A0A1J6KEC6|A0A1J6KEC6_NICAT (Putative ribonuclease h protein OS=Nicotiana attenuata OX=49451 GN=A4A49_64076 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 1.5e-08
Identity = 33/47 (70.21%), Postives = 34/47 (72.34%), Query Frame = 0

Query: 30 LTKPLPIESPAHSSTGTRSESWSLSLLGSLRFHVLFHSPMGFFSPFP 77
          L +    ESPAHSSTGTRSE W L LLGSLRFHVLFHSPMG     P
Sbjct: 4  LNQATAYESPAHSSTGTRSEPWLLPLLGSLRFHVLFHSPMGVLFTLP 50

BLAST of Bhi09G002177 vs. TrEMBL
Match: tr|A0A2G3AVP4|A0A2G3AVP4_CAPCH (Uncharacterized protein OS=Capsicum chinense OX=80379 GN=BC332_32776 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 2.2e-07
Identity = 32/47 (68.09%), Postives = 33/47 (70.21%), Query Frame = 0

Query: 30 LTKPLPIESPAHSSTGTRSESWSLSLLGSLRFHVLFHSPMGFFSPFP 77
          L +    ESPAHSSTGT SE W L LLGSLRFHVLFHSPMG     P
Sbjct: 7  LNQATAYESPAHSSTGTWSEPWLLPLLGSLRFHVLFHSPMGVLFILP 53

BLAST of Bhi09G002177 vs. TrEMBL
Match: tr|K2EG17|K2EG17_9ZZZZ (Uncharacterized protein OS=groundwater metagenome OX=717931 GN=ACD_20C00008G0002 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 2.2e-07
Identity = 41/81 (50.62%), Postives = 47/81 (58.02%), Query Frame = 0

Query: 16  PMNNSLSLRLRWVPLTKPLPIESPAHSSTGTRSESWSLSLLGSLRFHVLFHSP-MGFFSP 75
           P ++SLSLRLR   L       S  H + GTRS    L  L   RF VL HSP  G FSP
Sbjct: 48  PYSDSLSLRLRHFRLNLARKSNSLTHYAKGTRSHPKVLPPLVGNRFQVLLHSPNRGSFSP 107

Query: 76  FPHGTTSLSVTRS-IALQGGP 95
           FPHGT SLSV +  +AL+ GP
Sbjct: 108 FPHGTGSLSVAKEYLALEDGP 128

BLAST of Bhi09G002177 vs. TrEMBL
Match: tr|A0A0P6K0L2|A0A0P6K0L2_9CRUS (Uncharacterized protein OS=Daphnia magna OX=35525 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 2.9e-07
Identity = 43/97 (44.33%), Postives = 57/97 (58.76%), Query Frame = 0

Query: 1  MDRSPRFRSISSDNCPMNNSLSLRLRWVPLTKPLPIE--SPAHSSTGTRSESWSLSLLGS 60
          MDRS  F S  SD+ P ++S+SLRL   P +  L  E  S  H + GT+S+      L +
Sbjct: 1  MDRSLGFGSTPSDSTPYSDSISLRL---PYSVKLATECKSLTHYTKGTQSQFPGSDFLYA 60

Query: 61 LRFHVLFHSPMGFFSPFPHGTTSLSVTRS-IALQGGP 95
            F + F    GFFSPFPHGT SLSV++  +AL+ GP
Sbjct: 61 HGFRIYFTPLPGFFSPFPHGTGSLSVSQEYLALEDGP 94

BLAST of Bhi09G002177 vs. NCBI nr
Match: OIT27734.1 (putative ribonuclease h protein [Nicotiana attenuata])

HSP 1 Score: 67.8 bits (164), Expect = 2.3e-08
Identity = 33/47 (70.21%), Postives = 34/47 (72.34%), Query Frame = 0

Query: 30 LTKPLPIESPAHSSTGTRSESWSLSLLGSLRFHVLFHSPMGFFSPFP 77
          L +    ESPAHSSTGTRSE W L LLGSLRFHVLFHSPMG     P
Sbjct: 4  LNQATAYESPAHSSTGTRSEPWLLPLLGSLRFHVLFHSPMGVLFTLP 50

BLAST of Bhi09G002177 vs. NCBI nr
Match: EKE04739.1 (hypothetical protein ACD_20C00008G0002 [uncultured bacterium])

HSP 1 Score: 63.9 bits (154), Expect = 3.3e-07
Identity = 41/81 (50.62%), Postives = 47/81 (58.02%), Query Frame = 0

Query: 16  PMNNSLSLRLRWVPLTKPLPIESPAHSSTGTRSESWSLSLLGSLRFHVLFHSP-MGFFSP 75
           P ++SLSLRLR   L       S  H + GTRS    L  L   RF VL HSP  G FSP
Sbjct: 48  PYSDSLSLRLRHFRLNLARKSNSLTHYAKGTRSHPKVLPPLVGNRFQVLLHSPNRGSFSP 107

Query: 76  FPHGTTSLSVTRS-IALQGGP 95
           FPHGT SLSV +  +AL+ GP
Sbjct: 108 FPHGTGSLSVAKEYLALEDGP 128

BLAST of Bhi09G002177 vs. NCBI nr
Match: PHT98307.1 (hypothetical protein BC332_32776 [Capsicum chinense])

HSP 1 Score: 63.9 bits (154), Expect = 3.3e-07
Identity = 32/47 (68.09%), Postives = 33/47 (70.21%), Query Frame = 0

Query: 30 LTKPLPIESPAHSSTGTRSESWSLSLLGSLRFHVLFHSPMGFFSPFP 77
          L +    ESPAHSSTGT SE W L LLGSLRFHVLFHSPMG     P
Sbjct: 7  LNQATAYESPAHSSTGTWSEPWLLPLLGSLRFHVLFHSPMGVLFILP 53

BLAST of Bhi09G002177 vs. NCBI nr
Match: PPR91549.1 (hypothetical protein GOBAR_AA29149 [Gossypium barbadense])

HSP 1 Score: 63.5 bits (153), Expect = 4.3e-07
Identity = 35/66 (53.03%), Postives = 39/66 (59.09%), Query Frame = 0

Query: 11 SSDNCPMNNSLSLRLRWVPLTKPLPIESPAHSSTGTRSESWSLSLLGSLRFHVLFHSPMG 70
          S+D+    +SLSLRLRWVPLTKPLP+                L LLGSLRFHVLFHSP G
Sbjct: 31 SADSSTSVDSLSLRLRWVPLTKPLPMSRRLIVQQVRVQSPGLLPLLGSLRFHVLFHSPTG 90

Query: 71 FFSPFP 77
               P
Sbjct: 91 VLFTLP 96

BLAST of Bhi09G002177 vs. NCBI nr
Match: KNA10645.1 (hypothetical protein SOVF_142410 [Spinacia oleracea])

HSP 1 Score: 61.2 bits (147), Expect = 2.1e-06
Identity = 34/63 (53.97%), Postives = 36/63 (57.14%), Query Frame = 0

Query: 14 NCPMNNSLSLRLRWVPLTKPLPIESPAHSSTGTRSESWSLSLLGSLRFHVLFHSPMGFFS 73
          N    +SLSLRLRWVPLTKPLP+                L LL SLRFHVLFHSPMG   
Sbjct: 13 NLIYEDSLSLRLRWVPLTKPLPMSRRLILQQARGQGLVPLPLLESLRFHVLFHSPMGVLF 72

Query: 74 PFP 77
            P
Sbjct: 73 TLP 75

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A287XQQ5|A0A287XQQ5_HORVV1.8e-0959.42Uncharacterized protein OS=Hordeum vulgare subsp. vulgare OX=112509 PE=4 SV=1[more]
tr|A0A1J6KEC6|A0A1J6KEC6_NICAT1.5e-0870.21Putative ribonuclease h protein OS=Nicotiana attenuata OX=49451 GN=A4A49_64076 P... [more]
tr|A0A2G3AVP4|A0A2G3AVP4_CAPCH2.2e-0768.09Uncharacterized protein OS=Capsicum chinense OX=80379 GN=BC332_32776 PE=4 SV=1[more]
tr|K2EG17|K2EG17_9ZZZZ2.2e-0750.62Uncharacterized protein OS=groundwater metagenome OX=717931 GN=ACD_20C00008G0002... [more]
tr|A0A0P6K0L2|A0A0P6K0L2_9CRUS2.9e-0744.33Uncharacterized protein OS=Daphnia magna OX=35525 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
OIT27734.12.3e-0870.21putative ribonuclease h protein [Nicotiana attenuata][more]
EKE04739.13.3e-0750.62hypothetical protein ACD_20C00008G0002 [uncultured bacterium][more]
PHT98307.13.3e-0768.09hypothetical protein BC332_32776 [Capsicum chinense][more]
PPR91549.14.3e-0753.03hypothetical protein GOBAR_AA29149 [Gossypium barbadense][more]
KNA10645.12.1e-0653.97hypothetical protein SOVF_142410 [Spinacia oleracea][more]

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Bhi09M002177Bhi09M002177mRNA


The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Bhi09G002177Cucumber (Gy14) v1cgywgoB632
Bhi09G002177Cucumber (Gy14) v2cgybwgoB329
Bhi09G002177Cucurbita maxima (Rimu)cmawgoB0026
Bhi09G002177Cucurbita maxima (Rimu)cmawgoB0223
Bhi09G002177Cucurbita maxima (Rimu)cmawgoB0617
Bhi09G002177Cucurbita maxima (Rimu)cmawgoB0962
Bhi09G002177Cucurbita maxima (Rimu)cmawgoB1135
Bhi09G002177Cucurbita moschata (Rifu)cmowgoB0020
Bhi09G002177Cucurbita moschata (Rifu)cmowgoB0218
Bhi09G002177Cucurbita moschata (Rifu)cmowgoB0615
Bhi09G002177Cucurbita moschata (Rifu)cmowgoB0961
Bhi09G002177Cucurbita moschata (Rifu)cmowgoB1132
Bhi09G002177Cucurbita pepo (Zucchini)cpewgoB0158
Bhi09G002177Cucurbita pepo (Zucchini)cpewgoB0713
Bhi09G002177Cucurbita pepo (Zucchini)cpewgoB0988
Bhi09G002177Cucurbita pepo (Zucchini)cpewgoB1059
Bhi09G002177Wild cucumber (PI 183967)cpiwgoB343
Bhi09G002177Cucumber (Chinese Long) v3cucwgoB346
Bhi09G002177Cucumber (Chinese Long) v2cuwgoB340
Bhi09G002177Bottle gourd (USVL1VR-Ls)lsiwgoB393
Bhi09G002177Bottle gourd (USVL1VR-Ls)lsiwgoB626
Bhi09G002177Melon (DHL92) v3.6.1medwgoB437
Bhi09G002177Melon (DHL92) v3.5.1mewgoB435
Bhi09G002177Watermelon (Charleston Gray)wcgwgoB179
Bhi09G002177Watermelon (Charleston Gray)wcgwgoB655
Bhi09G002177Watermelon (97103) v2wgowmbB558
Bhi09G002177Watermelon (97103) v1wgowmB600
Bhi09G002177Watermelon (97103) v1wgowmB637
Bhi09G002177Silver-seed gourdcarwgoB0752
Bhi09G002177Silver-seed gourdcarwgoB0789
Bhi09G002177Silver-seed gourdcarwgoB0882