Bhi09M001594 (mRNA) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi09M001594
Type	mRNA
Organism	Benincasa hispida (Wax gourd)
Description	Unknown protein
Location	chr9 : 52178402 .. 52178647 (+)
Sequence length	246

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCTCCAAGCGGGGGTGAAATGAGCTCTAAGGATTACCATACTCCAAGTGTTACCACAAGGTTGAAGGACATCGAGACTGTGCCTCAGTCCTCCATAAAAAGAAGAGGTTATAGGAGATCCGAGGCGAAGAGTGGGAATTCGGGAAGTGGAACAAAAACTTTGATCTTTTGTTCAAATCGGTTTTTGAATCTGATTTCCCCACCAGAGAAGCTGGAAGCTTGGAAAGGAGGTCACGATCAATAG

mRNA sequence

ATGCCTCCAAGCGGGGGTGAAATGAGCTCTAAGGATTACCATACTCCAAGTGTTACCACAAGGTTGAAGGACATCGAGACTGTGCCTCAGTCCTCCATAAAAAGAAGAGGTTATAGGAGATCCGAGGCGAAGAGTGGGAATTCGGGAAGTGGAACAAAAACTTTGATCTTTTGTTCAAATCGGTTTTTGAATCTGATTTCCCCACCAGAGAAGCTGGAAGCTTGGAAAGGAGGTCACGATCAATAG

Coding sequence (CDS)

ATGCCTCCAAGCGGGGGTGAAATGAGCTCTAAGGATTACCATACTCCAAGTGTTACCACAAGGTTGAAGGACATCGAGACTGTGCCTCAGTCCTCCATAAAAAGAAGAGGTTATAGGAGATCCGAGGCGAAGAGTGGGAATTCGGGAAGTGGAACAAAAACTTTGATCTTTTGTTCAAATCGGTTTTTGAATCTGATTTCCCCACCAGAGAAGCTGGAAGCTTGGAAAGGAGGTCACGATCAATAG

Protein sequence

MPPSGGEMSSKDYHTPSVTTRLKDIETVPQSSIKRRGYRRSEAKSGNSGSGTKTLIFCSNRFLNLISPPEKLEAWKGGHDQ

Homology

[Close]

BLAST of Bhi09M001594 vs. TrEMBL
Match: tr|A0A1S3C006|A0A1S3C006_CUCME (uncharacterized protein LOC103494912 OS=Cucumis melo OX=3656 GN=LOC103494912 PE=4 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 5.6e-04
Identity = 24/34 (70.59%), Postives = 28/34 (82.35%), Query Frame = 0


Query: 1   MPPSGGEMSSKDYHTPSVTTRLKDIETVPQSSIK 35
           MPP GGE+SSKDYHTP+VT R KD + V +SSIK
Sbjct: 464 MPPGGGEISSKDYHTPNVTARSKDSKIVSRSSIK 497

[Close]

BLAST of Bhi09M001594 vs. NCBI nr
Match: XP_008454514.1 (PREDICTED: uncharacterized protein LOC103494912 [Cucumis melo])

HSP 1 Score: 52.4 bits (124), Expect = 8.5e-04
Identity = 24/34 (70.59%), Postives = 28/34 (82.35%), Query Frame = 0


Query: 1   MPPSGGEMSSKDYHTPSVTTRLKDIETVPQSSIK 35
           MPP GGE+SSKDYHTP+VT R KD + V +SSIK
Sbjct: 464 MPPGGGEISSKDYHTPNVTARSKDSKIVSRSSIK 497

The following BLAST results are available for this feature:

BLAST of Bhi09M001594 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Bhi09M001594 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Bhi09M001594 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3C006\|A0A1S3C006_CUCME	5.6e-04	70.59	uncharacterized protein LOC103494912 OS=Cucumis melo OX=3656 GN=LOC103494912 PE=...	[more]

BLAST of Bhi09M001594 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008454514.1	8.5e-04	70.59	PREDICTED: uncharacterized protein LOC103494912 [Cucumis melo]	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Bhi09G001594	Bhi09G001594	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Bhi09M001594.exon1	Bhi09M001594.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.Bhi09M001594	cds.Bhi09M001594	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Bhi09M001594	Bhi09M001594-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..53
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 10..27
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 28..42