Bhi09M000775 (mRNA) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi09M000775
Type	mRNA
Organism	Benincasa hispida (Wax gourd)
Description	Unknown protein
Location	chr9 : 21184375 .. 21185032 (+)
Sequence length	351

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTCATAATTCCAATCATGAAGAGGAAAGGGAAGGTGGATTTGGTGGTGTTAAGGGTTCTTGTGATTATATTGTTCAATCTCCAAATCAATCCTTACAATTAATTCCACACCCTATTGGCTTCAATTCCTCTACCTCTGCCAATGCCAACTCGGTTCAAATTTCGACCAGAATCGATGATCGTCGGGTTAGAATTAAAAAACGTTCTTCAAAACCTAAAGCTTCAAAGAAGAAAGATGGTTATCATCAACGTCAAGGAGCTAAGAAGCCACGCCTCATTTGGACACCAGAACTCCATCAACATTTTCTTGAAATTCATAATCGCTCACCATTACATGAAAGTAAGCAGCTTCTTTTAGTTATATATATATGTATATCTCCATTTAAAAAAGAAGCTCATTTGATCATTTGTGTTCTGGATTAATGTAGGACTTTTCCCTAAGAAAATCTTGGAGCAAATGAGAAAAAAATTCCCCTTTATCACTAGAGAAAATATTGCCAGCCACCTCCAGGTAGAAGTTTATGAAGTTTTTTTTTTTTTTTTTTTTTTTTTTAATTTTATAATTTTAAATACGAGTAGTGTATAGTAGTGTAGTAGTGTACTTGTATCGCGTTTAATCTAAAATAAATTTTGGTTGATGAATGCAGAAGCATAG

mRNA sequence

ATGGCTCATAATTCCAATCATGAAGAGGAAAGGGAAGGTGGATTTGGTGGTGTTAAGGGTTCTTGTGATTATATTGTTCAATCTCCAAATCAATCCTTACAATTAATTCCACACCCTATTGGCTTCAATTCCTCTACCTCTGCCAATGCCAACTCGGTTCAAATTTCGACCAGAATCGATGATCGTCGGGTTAGAATTAAAAAACGTTCTTCAAAACCTAAAGCTTCAAAGAAGAAAGATGGTTATCATCAACGTCAAGGAGCTAAGAAGCCACGCCTCATTTGGACACCAGAACTCCATCAACATTTTCTTGAAATTCATAATCGCTCACCATTACATGAAAAAGCATAG

Coding sequence (CDS)

ATGGCTCATAATTCCAATCATGAAGAGGAAAGGGAAGGTGGATTTGGTGGTGTTAAGGGTTCTTGTGATTATATTGTTCAATCTCCAAATCAATCCTTACAATTAATTCCACACCCTATTGGCTTCAATTCCTCTACCTCTGCCAATGCCAACTCGGTTCAAATTTCGACCAGAATCGATGATCGTCGGGTTAGAATTAAAAAACGTTCTTCAAAACCTAAAGCTTCAAAGAAGAAAGATGGTTATCATCAACGTCAAGGAGCTAAGAAGCCACGCCTCATTTGGACACCAGAACTCCATCAACATTTTCTTGAAATTCATAATCGCTCACCATTACATGAAAAAGCATAG

Protein sequence

MAHNSNHEEEREGGFGGVKGSCDYIVQSPNQSLQLIPHPIGFNSSTSANANSVQISTRIDDRRVRIKKRSSKPKASKKKDGYHQRQGAKKPRLIWTPELHQHFLEIHNRSPLHEKA

Homology

[Close]

BLAST of Bhi09M000775 vs. TrEMBL
Match: tr|A0A1S4DYK0|A0A1S4DYK0_CUCME (uncharacterized protein LOC107991159 OS=Cucumis melo OX=3656 GN=LOC107991159 PE=4 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 1.0e-19
Identity = 59/99 (59.60%), Postives = 72/99 (72.73%), Query Frame = 0


Query: 14  GFGGVKGSCDYIVQSP-NQSLQLIPHPIGFNSSTSANANSVQISTRIDDRRVRIKKRSSK 73
           GF GV GSCDY+VQSP +Q LQL+P+ +G +S +     S      +D RRV  +K SSK
Sbjct: 5   GFSGVNGSCDYLVQSPDHQPLQLVPYHVGCSSHSVXXXXS---GINLDRRRVG-RKSSSK 64

Query: 74  PKASKKKDGYHQRQGAKKPRLIWTPELHQHFLEIHNRSP 112
           PKASKKK+GYHQ QG KK RLIWTPELHQ F++I NR+P
Sbjct: 65  PKASKKKNGYHQPQGEKKQRLIWTPELHQCFVDIFNRTP 99

[Close]

BLAST of Bhi09M000775 vs. TrEMBL
Match: tr|A0A0A0K9E6|A0A0A0K9E6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G405930 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 7.5e-10
Identity = 54/157 (34.39%), Postives = 71/157 (45.22%), Query Frame = 0


Query: 10  EREGGFGGVKGSCDYIVQSP-NQSLQLIPHPIGFNSSTSANANSVQISTR---------- 69
           E + GF GV  SCDY+VQ P +Q L L+PH +G +S     ++S  +             
Sbjct: 2   EDDPGFCGVNCSCDYLVQYPDHQPLHLVPHHVGCSSHPVVTSSSNPVXXXXXXXXXXXXX 61

Query: 70  --------------------------------------------IDDRRVRIKKRSSKPK 112
                                                       ++ RRV  +K SSKPK
Sbjct: 62  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDVNGRRVG-RKGSSKPK 121

[Close]

BLAST of Bhi09M000775 vs. NCBI nr
Match: XP_016901048.1 (PREDICTED: uncharacterized protein LOC107991159 [Cucumis melo])

HSP 1 Score: 105.1 bits (261), Expect = 1.6e-19
Identity = 59/99 (59.60%), Postives = 72/99 (72.73%), Query Frame = 0


Query: 14  GFGGVKGSCDYIVQSP-NQSLQLIPHPIGFNSSTSANANSVQISTRIDDRRVRIKKRSSK 73
           GF GV GSCDY+VQSP +Q LQL+P+ +G +S +     S      +D RRV  +K SSK
Sbjct: 5   GFSGVNGSCDYLVQSPDHQPLQLVPYHVGCSSHSVXXXXS---GINLDRRRVG-RKSSSK 64

Query: 74  PKASKKKDGYHQRQGAKKPRLIWTPELHQHFLEIHNRSP 112
           PKASKKK+GYHQ QG KK RLIWTPELHQ F++I NR+P
Sbjct: 65  PKASKKKNGYHQPQGEKKQRLIWTPELHQCFVDIFNRTP 99

[Close]

BLAST of Bhi09M000775 vs. NCBI nr
Match: KGN44987.1 (hypothetical protein Csa_7G405930 [Cucumis sativus])

HSP 1 Score: 72.4 bits (176), Expect = 1.1e-09
Identity = 54/157 (34.39%), Postives = 71/157 (45.22%), Query Frame = 0


Query: 10  EREGGFGGVKGSCDYIVQSP-NQSLQLIPHPIGFNSSTSANANSVQISTR---------- 69
           E + GF GV  SCDY+VQ P +Q L L+PH +G +S     ++S  +             
Sbjct: 2   EDDPGFCGVNCSCDYLVQYPDHQPLHLVPHHVGCSSHPVVTSSSNPVXXXXXXXXXXXXX 61

Query: 70  --------------------------------------------IDDRRVRIKKRSSKPK 112
                                                       ++ RRV  +K SSKPK
Sbjct: 62  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDVNGRRVG-RKGSSKPK 121

The following BLAST results are available for this feature:

BLAST of Bhi09M000775 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Bhi09M000775 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Bhi09M000775 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S4DYK0\|A0A1S4DYK0_CUCME	1.0e-19	59.60	uncharacterized protein LOC107991159 OS=Cucumis melo OX=3656 GN=LOC107991159 PE=...	[more]
tr\|A0A0A0K9E6\|A0A0A0K9E6_CUCSA	7.5e-10	34.39	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G405930 PE=4 SV=1	[more]

BLAST of Bhi09M000775 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_016901048.1	1.6e-19	59.60	PREDICTED: uncharacterized protein LOC107991159 [Cucumis melo]	[more]
KGN44987.1	1.1e-09	34.39	hypothetical protein Csa_7G405930 [Cucumis sativus]	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Bhi09G000775	Bhi09G000775	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Bhi09M000775.exon1	Bhi09M000775.exon1	exon
Bhi09M000775.exon2	Bhi09M000775.exon2	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.Bhi09M000775	cds.Bhi09M000775	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Bhi09M000775	Bhi09M000775-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	G3DSA:1.10.10.60		coord: 87..116 e-value: 5.8E-5 score: 25.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 42..94
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 42..57
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 67..85