Bhi09G000775 (gene) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi09G000775
Type	gene
Organism	Benincasa hispida (Wax gourd)
Description	Unknown protein
Location	chr9 : 21184375 .. 21185032 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTCATAATTCCAATCATGAAGAGGAAAGGGAAGGTGGATTTGGTGGTGTTAAGGGTTCTTGTGATTATATTGTTCAATCTCCAAATCAATCCTTACAATTAATTCCACACCCTATTGGCTTCAATTCCTCTACCTCTGCCAATGCCAACTCGGTTCAAATTTCGACCAGAATCGATGATCGTCGGGTTAGAATTAAAAAACGTTCTTCAAAACCTAAAGCTTCAAAGAAGAAAGATGGTTATCATCAACGTCAAGGAGCTAAGAAGCCACGCCTCATTTGGACACCAGAACTCCATCAACATTTTCTTGAAATTCATAATCGCTCACCATTACATGAAAGTAAGCAGCTTCTTTTAGTTATATATATATGTATATCTCCATTTAAAAAAGAAGCTCATTTGATCATTTGTGTTCTGGATTAATGTAGGACTTTTCCCTAAGAAAATCTTGGAGCAAATGAGAAAAAAATTCCCCTTTATCACTAGAGAAAATATTGCCAGCCACCTCCAGGTAGAAGTTTATGAAGTTTTTTTTTTTTTTTTTTTTTTTTTTAATTTTATAATTTTAAATACGAGTAGTGTATAGTAGTGTAGTAGTGTACTTGTATCGCGTTTAATCTAAAATAAATTTTGGTTGATGAATGCAGAAGCATAG

mRNA sequence

ATGGCTCATAATTCCAATCATGAAGAGGAAAGGGAAGGTGGATTTGGTGGTGTTAAGGGTTCTTGTGATTATATTGTTCAATCTCCAAATCAATCCTTACAATTAATTCCACACCCTATTGGCTTCAATTCCTCTACCTCTGCCAATGCCAACTCGGTTCAAATTTCGACCAGAATCGATGATCGTCGGGTTAGAATTAAAAAACGTTCTTCAAAACCTAAAGCTTCAAAGAAGAAAGATGGTTATCATCAACGTCAAGGAGCTAAGAAGCCACGCCTCATTTGGACACCAGAACTCCATCAACATTTTCTTGAAATTCATAATCGCTCACCATTACATGAAAAAGCATAG

Coding sequence (CDS)

ATGGCTCATAATTCCAATCATGAAGAGGAAAGGGAAGGTGGATTTGGTGGTGTTAAGGGTTCTTGTGATTATATTGTTCAATCTCCAAATCAATCCTTACAATTAATTCCACACCCTATTGGCTTCAATTCCTCTACCTCTGCCAATGCCAACTCGGTTCAAATTTCGACCAGAATCGATGATCGTCGGGTTAGAATTAAAAAACGTTCTTCAAAACCTAAAGCTTCAAAGAAGAAAGATGGTTATCATCAACGTCAAGGAGCTAAGAAGCCACGCCTCATTTGGACACCAGAACTCCATCAACATTTTCTTGAAATTCATAATCGCTCACCATTACATGAAAAAGCATAG

Protein sequence

MAHNSNHEEEREGGFGGVKGSCDYIVQSPNQSLQLIPHPIGFNSSTSANANSVQISTRIDDRRVRIKKRSSKPKASKKKDGYHQRQGAKKPRLIWTPELHQHFLEIHNRSPLHEKA

Homology

[Close]

BLAST of Bhi09G000775 vs. TrEMBL
Match: tr|A0A1S4DYK0|A0A1S4DYK0_CUCME (uncharacterized protein LOC107991159 OS=Cucumis melo OX=3656 GN=LOC107991159 PE=4 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 1.0e-19
Identity = 59/99 (59.60%), Postives = 72/99 (72.73%), Query Frame = 0


Query: 14  GFGGVKGSCDYIVQSP-NQSLQLIPHPIGFNSSTSANANSVQISTRIDDRRVRIKKRSSK 73
           GF GV GSCDY+VQSP +Q LQL+P+ +G +S +     S      +D RRV  +K SSK
Sbjct: 5   GFSGVNGSCDYLVQSPDHQPLQLVPYHVGCSSHSVXXXXS---GINLDRRRVG-RKSSSK 64

Query: 74  PKASKKKDGYHQRQGAKKPRLIWTPELHQHFLEIHNRSP 112
           PKASKKK+GYHQ QG KK RLIWTPELHQ F++I NR+P
Sbjct: 65  PKASKKKNGYHQPQGEKKQRLIWTPELHQCFVDIFNRTP 99

[Close]

BLAST of Bhi09G000775 vs. TrEMBL
Match: tr|A0A0A0K9E6|A0A0A0K9E6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G405930 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 7.5e-10
Identity = 54/157 (34.39%), Postives = 71/157 (45.22%), Query Frame = 0


Query: 10  EREGGFGGVKGSCDYIVQSP-NQSLQLIPHPIGFNSSTSANANSVQISTR---------- 69
           E + GF GV  SCDY+VQ P +Q L L+PH +G +S     ++S  +             
Sbjct: 2   EDDPGFCGVNCSCDYLVQYPDHQPLHLVPHHVGCSSHPVVTSSSNPVXXXXXXXXXXXXX 61

Query: 70  --------------------------------------------IDDRRVRIKKRSSKPK 112
                                                       ++ RRV  +K SSKPK
Sbjct: 62  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDVNGRRVG-RKGSSKPK 121

[Close]

BLAST of Bhi09G000775 vs. NCBI nr
Match: XP_016901048.1 (PREDICTED: uncharacterized protein LOC107991159 [Cucumis melo])

HSP 1 Score: 105.1 bits (261), Expect = 1.6e-19
Identity = 59/99 (59.60%), Postives = 72/99 (72.73%), Query Frame = 0


Query: 14  GFGGVKGSCDYIVQSP-NQSLQLIPHPIGFNSSTSANANSVQISTRIDDRRVRIKKRSSK 73
           GF GV GSCDY+VQSP +Q LQL+P+ +G +S +     S      +D RRV  +K SSK
Sbjct: 5   GFSGVNGSCDYLVQSPDHQPLQLVPYHVGCSSHSVXXXXS---GINLDRRRVG-RKSSSK 64

Query: 74  PKASKKKDGYHQRQGAKKPRLIWTPELHQHFLEIHNRSP 112
           PKASKKK+GYHQ QG KK RLIWTPELHQ F++I NR+P
Sbjct: 65  PKASKKKNGYHQPQGEKKQRLIWTPELHQCFVDIFNRTP 99

[Close]

BLAST of Bhi09G000775 vs. NCBI nr
Match: KGN44987.1 (hypothetical protein Csa_7G405930 [Cucumis sativus])

HSP 1 Score: 72.4 bits (176), Expect = 1.1e-09
Identity = 54/157 (34.39%), Postives = 71/157 (45.22%), Query Frame = 0


Query: 10  EREGGFGGVKGSCDYIVQSP-NQSLQLIPHPIGFNSSTSANANSVQISTR---------- 69
           E + GF GV  SCDY+VQ P +Q L L+PH +G +S     ++S  +             
Sbjct: 2   EDDPGFCGVNCSCDYLVQYPDHQPLHLVPHHVGCSSHPVVTSSSNPVXXXXXXXXXXXXX 61

Query: 70  --------------------------------------------IDDRRVRIKKRSSKPK 112
                                                       ++ RRV  +K SSKPK
Sbjct: 62  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDVNGRRVG-RKGSSKPK 121

The following BLAST results are available for this feature:

BLAST of Bhi09G000775 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Bhi09G000775 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Bhi09G000775 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S4DYK0\|A0A1S4DYK0_CUCME	1.0e-19	59.60	uncharacterized protein LOC107991159 OS=Cucumis melo OX=3656 GN=LOC107991159 PE=...	[more]
tr\|A0A0A0K9E6\|A0A0A0K9E6_CUCSA	7.5e-10	34.39	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G405930 PE=4 SV=1	[more]

BLAST of Bhi09G000775 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_016901048.1	1.6e-19	59.60	PREDICTED: uncharacterized protein LOC107991159 [Cucumis melo]	[more]
KGN44987.1	1.1e-09	34.39	hypothetical protein Csa_7G405930 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0050794	regulation of cellular process
biological_process	GO:0050896	response to stimulus
biological_process	GO:0044699	single-organism process
biological_process	GO:0006351	transcription, DNA-templated
biological_process	GO:0000160	phosphorelay signal transduction system
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0000785	chromatin
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003682	chromatin binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi09M000775	Bhi09M000775	mRNA

InterPro

Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	G3DSA:1.10.10.60		coord: 87..116 e-value: 5.8E-5 score: 25.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 42..94
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 42..57
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 67..85

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Bhi09G000775	MELO3C015950	Melon (DHL92) v3.5.1	mewgoB254
Bhi09G000775	ClCG09G005380	Watermelon (Charleston Gray)	wcgwgoB069
Bhi09G000775	Lsi02G024440	Bottle gourd (USVL1VR-Ls)	lsiwgoB271
Bhi09G000775	MELO3C015950.2	Melon (DHL92) v3.6.1	medwgoB255
Bhi09G000775	Cla015112	Watermelon (97103) v1	wgowmB586
Bhi09G000775	Cla97C09G167850	Watermelon (97103) v2	wgowmbB615

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Bhi09G000775	Cucumber (Gy14) v1	cgywgoB432
Bhi09G000775	Cucumber (Gy14) v2	cgybwgoB660
Bhi09G000775	Cucurbita maxima (Rimu)	cmawgoB0494
Bhi09G000775	Cucurbita maxima (Rimu)	cmawgoB1119
Bhi09G000775	Cucurbita moschata (Rifu)	cmowgoB0493
Bhi09G000775	Cucurbita moschata (Rifu)	cmowgoB1118
Bhi09G000775	Cucurbita pepo (Zucchini)	cpewgoB0210
Bhi09G000775	Cucurbita pepo (Zucchini)	cpewgoB0420
Bhi09G000775	Wild cucumber (PI 183967)	cpiwgoB703
Bhi09G000775	Cucumber (Chinese Long) v3	cucwgoB716
Bhi09G000775	Cucumber (Chinese Long) v2	cuwgoB691
Bhi09G000775	Silver-seed gourd	carwgoB0133
Bhi09G000775	Silver-seed gourd	carwgoB0674