Bhi09M000701 (mRNA) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi09M000701
Type	mRNA
Organism	Benincasa hispida (Wax gourd)
Description	Unknown protein
Location	chr9 : 19178543 .. 19178929 (+)
Sequence length	387

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTTACATCCCACAAAATGAGTCACCAGCGGCCGATTTTCCCCAATCATCTCCTCGAATTTGTCAACCAAATTCCCCCAATACCCATGAAGATTATACGAATTCTCTAAATAGATCTTGTTTCCCCATTTCTCCCTTTGTGTTGCCAGAAGGTAAACCATGGCGGATTGATCATCTGCTTCAAAGATTGGCCTGTCTTTCAGCTCTTTTGTCAGGATTTTCCCTGCTTCGTCTCGGATTTTCCCTCTTGGCCCCATCGGAGCCCACGCATCGAGAATGTCGAGCGACCATTGGCAGTTTCTCATCAAGAAACTCCCTGTATTCAACCCAACCCAGCTTCTTTGATCATACACCATCTCCTTCCATCCATGCATTACGAAATTGA

mRNA sequence

ATGGTTTACATCCCACAAAATGAGTCACCAGCGGCCGATTTTCCCCAATCATCTCCTCGAATTTGTCAACCAAATTCCCCCAATACCCATGAAGATTATACGAATTCTCTAAATAGATCTTGTTTCCCCATTTCTCCCTTTGTGTTGCCAGAAGGTAAACCATGGCGGATTGATCATCTGCTTCAAAGATTGGCCTGTCTTTCAGCTCTTTTGTCAGGATTTTCCCTGCTTCGTCTCGGATTTTCCCTCTTGGCCCCATCGGAGCCCACGCATCGAGAATGTCGAGCGACCATTGGCAGTTTCTCATCAAGAAACTCCCTGTATTCAACCCAACCCAGCTTCTTTGATCATACACCATCTCCTTCCATCCATGCATTACGAAATTGA

Coding sequence (CDS)

ATGGTTTACATCCCACAAAATGAGTCACCAGCGGCCGATTTTCCCCAATCATCTCCTCGAATTTGTCAACCAAATTCCCCCAATACCCATGAAGATTATACGAATTCTCTAAATAGATCTTGTTTCCCCATTTCTCCCTTTGTGTTGCCAGAAGGTAAACCATGGCGGATTGATCATCTGCTTCAAAGATTGGCCTGTCTTTCAGCTCTTTTGTCAGGATTTTCCCTGCTTCGTCTCGGATTTTCCCTCTTGGCCCCATCGGAGCCCACGCATCGAGAATGTCGAGCGACCATTGGCAGTTTCTCATCAAGAAACTCCCTGTATTCAACCCAACCCAGCTTCTTTGATCATACACCATCTCCTTCCATCCATGCATTACGAAATTGA

Protein sequence

MVYIPQNESPAADFPQSSPRICQPNSPNTHEDYTNSLNRSCFPISPFVLPEGKPWRIDHLLQRLACLSALLSGFSLLRLGFSLLAPSEPTHRECRATIGSFSSRNSLYSTQPSFFDHTPSPSIHALRN

Homology

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BLAST of Bhi09M000701 vs. TrEMBL
Match: tr|A0A0A0K615|A0A0A0K615_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G396385 PE=4 SV=1)

HSP 1 Score: 206.8 bits (525), Expect = 2.8e-50
Identity = 103/126 (81.75%), Postives = 105/126 (83.33%), Query Frame = 0


Query: 1   MVYIPQNESPAADFPQSSPRICQPNSPNTHEDYTNSLNRSCFPISPFVLPEGKPWRIDHL 60
           MVY PQNESP A+FP  SPRICQP SPNTHEDY NSLNR CFPISPFVLPE KPW+IDHL
Sbjct: 1   MVYTPQNESPMANFPLPSPRICQPKSPNTHEDYRNSLNRFCFPISPFVLPEDKPWQIDHL 60

Query: 61  LQRLACLSALLSGFSLLRLGFSLLAPSEPTHRECRATIGSFSSRNSLYSTQPSFFDHTPS 120
           LQRLACLSA   GFS L LGFSL APSEPT RECRATIGSFSSRNSLY    SFFDHTPS
Sbjct: 61  LQRLACLSARSLGFSPLHLGFSLSAPSEPTRRECRATIGSFSSRNSLYLILSSFFDHTPS 120

Query: 121 PSIHAL 127
            S HAL
Sbjct: 121 LSNHAL 126

[Close]

BLAST of Bhi09M000701 vs. NCBI nr
Match: KGN44923.1 (hypothetical protein Csa_7G396385 [Cucumis sativus])

HSP 1 Score: 206.8 bits (525), Expect = 4.3e-50
Identity = 103/126 (81.75%), Postives = 105/126 (83.33%), Query Frame = 0


Query: 1   MVYIPQNESPAADFPQSSPRICQPNSPNTHEDYTNSLNRSCFPISPFVLPEGKPWRIDHL 60
           MVY PQNESP A+FP  SPRICQP SPNTHEDY NSLNR CFPISPFVLPE KPW+IDHL
Sbjct: 1   MVYTPQNESPMANFPLPSPRICQPKSPNTHEDYRNSLNRFCFPISPFVLPEDKPWQIDHL 60

Query: 61  LQRLACLSALLSGFSLLRLGFSLLAPSEPTHRECRATIGSFSSRNSLYSTQPSFFDHTPS 120
           LQRLACLSA   GFS L LGFSL APSEPT RECRATIGSFSSRNSLY    SFFDHTPS
Sbjct: 61  LQRLACLSARSLGFSPLHLGFSLSAPSEPTRRECRATIGSFSSRNSLYLILSSFFDHTPS 120

Query: 121 PSIHAL 127
            S HAL
Sbjct: 121 LSNHAL 126

The following BLAST results are available for this feature:

BLAST of Bhi09M000701 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Bhi09M000701 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Bhi09M000701 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0K615\|A0A0A0K615_CUCSA	2.8e-50	81.75	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G396385 PE=4 SV=1	[more]

BLAST of Bhi09M000701 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN44923.1	4.3e-50	81.75	hypothetical protein Csa_7G396385 [Cucumis sativus]	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Bhi09G000701	Bhi09G000701	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Bhi09M000701.exon1	Bhi09M000701.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.Bhi09M000701	cds.Bhi09M000701	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Bhi09M000701	Bhi09M000701-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 10..33
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..33