Bhi08M000524 (mRNA) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi08M000524
Type	mRNA
Organism	Benincasa hispida (Wax gourd)
Description	Cytochrome c oxidase subunit 1
Location	chr8 : 20017066 .. 20017272 (-)
Sequence length	207

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTATTTGCTGTAGAGTCCATCTTTTTGTTCACCATAGGAGGACTCACTGGAATAGTCCCGGAAAATTCAGGGCTAGACATTGCTTTGACATCCTCCGGATCTTCGAGCCTGAGCCCACACTCATGCAAGATCCTGTGGGCTCAGCGTACCATGGTCGCCACCTCATTCTCGCAGGCGTTCGTGATAGCCTCAATCGCGGCATAG

mRNA sequence

ATGTTATTTGCTGTAGAGTCCATCTTTTTGTTCACCATAGGAGGACTCACTGGAATAGTCCCGGAAAATTCAGGGCTAGACATTGCTTTGACATCCTCCGGATCTTCGAGCCTGAGCCCACACTCATGCAAGATCCTGTGGGCTCAGCGTACCATGGTCGCCACCTCATTCTCGCAGGCGTTCGTGATAGCCTCAATCGCGGCATAG

Coding sequence (CDS)

ATGTTATTTGCTGTAGAGTCCATCTTTTTGTTCACCATAGGAGGACTCACTGGAATAGTCCCGGAAAATTCAGGGCTAGACATTGCTTTGACATCCTCCGGATCTTCGAGCCTGAGCCCACACTCATGCAAGATCCTGTGGGCTCAGCGTACCATGGTCGCCACCTCATTCTCGCAGGCGTTCGTGATAGCCTCAATCGCGGCATAG

Protein sequence

MLFAVESIFLFTIGGLTGIVPENSGLDIALTSSGSSSLSPHSCKILWAQRTMVATSFSQAFVIASIAA

Homology

[Close]

BLAST of Bhi08M000524 vs. Swiss-Prot
Match: sp|P08743|COX1_OENBE (Cytochrome c oxidase subunit 1 OS=Oenothera berteroana OX=3950 GN=COX1 PE=3 SV=2)

HSP 1 Score: 52.0 bits (123), Expect = 3.0e-06
Identity = 26/30 (86.67%), Postives = 27/30 (90.00%), Query Frame = 0


Query: 1   MLFAVESIFLFTIGGLTGIVPENSGLDIAL 31
           MLFAV SIFLFT+GGL GIVP NSGLDIAL
Sbjct: 340 MLFAVGSIFLFTVGGLAGIVPANSGLDIAL 369

[Close]

BLAST of Bhi08M000524 vs. Swiss-Prot
Match: sp|P12786|COX1_PEA (Cytochrome c oxidase subunit 1 OS=Pisum sativum OX=3888 GN=COX1 PE=3 SV=2)

HSP 1 Score: 52.0 bits (123), Expect = 3.0e-06
Identity = 27/30 (90.00%), Postives = 27/30 (90.00%), Query Frame = 0


Query: 1   MLFAVESIFLFTIGGLTGIVPENSGLDIAL 31
           MLFAV  IFLFTIGGLTGIVP NSGLDIAL
Sbjct: 340 MLFAVGFIFLFTIGGLTGIVPANSGLDIAL 369

[Close]

BLAST of Bhi08M000524 vs. Swiss-Prot
Match: sp|P68540|COX1_AEGCO (Cytochrome c oxidase subunit 1 OS=Aegilops columnaris OX=4493 GN=COX1 PE=3 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 4.4e-05
Identity = 26/30 (86.67%), Postives = 26/30 (86.67%), Query Frame = 0


Query: 1   MLFAVESIFLFTIGGLTGIVPENSGLDIAL 31
           MLFAV  IFLFTIGGLTGIV  NSGLDIAL
Sbjct: 340 MLFAVGFIFLFTIGGLTGIVLANSGLDIAL 369

[Close]

BLAST of Bhi08M000524 vs. Swiss-Prot
Match: sp|P60620|COX1_ARATH (Cytochrome c oxidase subunit 1 OS=Arabidopsis thaliana OX=3702 GN=COX1 PE=3 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 4.4e-05
Identity = 26/30 (86.67%), Postives = 26/30 (86.67%), Query Frame = 0


Query: 1   MLFAVESIFLFTIGGLTGIVPENSGLDIAL 31
           MLFAV  IFLFTIGGLTGIV  NSGLDIAL
Sbjct: 340 MLFAVGFIFLFTIGGLTGIVLANSGLDIAL 369

[Close]

BLAST of Bhi08M000524 vs. Swiss-Prot
Match: sp|P08742|COX1_MAIZE (Cytochrome c oxidase subunit 1 OS=Zea mays OX=4577 GN=COX1 PE=3 SV=2)

HSP 1 Score: 48.1 bits (113), Expect = 4.4e-05
Identity = 26/30 (86.67%), Postives = 26/30 (86.67%), Query Frame = 0


Query: 1   MLFAVESIFLFTIGGLTGIVPENSGLDIAL 31
           MLFAV  IFLFTIGGLTGIV  NSGLDIAL
Sbjct: 340 MLFAVGFIFLFTIGGLTGIVLANSGLDIAL 369

[Close]

BLAST of Bhi08M000524 vs. TAIR10
Match: ATMG01360.1 (cytochrome oxidase)

HSP 1 Score: 48.1 bits (113), Expect = 2.4e-06
Identity = 26/30 (86.67%), Postives = 26/30 (86.67%), Query Frame = 0


Query: 1   MLFAVESIFLFTIGGLTGIVPENSGLDIAL 31
           MLFAV  IFLFTIGGLTGIV  NSGLDIAL
Sbjct: 340 MLFAVGFIFLFTIGGLTGIVLANSGLDIAL 369

[Close]

BLAST of Bhi08M000524 vs. TrEMBL
Match: tr|A0A088S8P8|A0A088S8P8_9ASTR (Cytochrome c oxidase subunit 1 (Fragment) OS=Pratia angulata OX=85225 GN=cox1 PE=3 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 1.2e-04
Identity = 28/30 (93.33%), Postives = 28/30 (93.33%), Query Frame = 0


Query: 1   MLFAVESIFLFTIGGLTGIVPENSGLDIAL 31
           MLFAV SIFLFTIGGLTGIVP NSGLDIAL
Sbjct: 186 MLFAVGSIFLFTIGGLTGIVPANSGLDIAL 215

[Close]

BLAST of Bhi08M000524 vs. TrEMBL
Match: tr|A0A088S8C0|A0A088S8C0_9ASTR (Cytochrome c oxidase subunit 1 (Fragment) OS=Pratia angulata OX=85225 GN=cox1 PE=3 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 1.2e-04
Identity = 28/30 (93.33%), Postives = 28/30 (93.33%), Query Frame = 0


Query: 1   MLFAVESIFLFTIGGLTGIVPENSGLDIAL 31
           MLFAV SIFLFTIGGLTGIVP NSGLDIAL
Sbjct: 186 MLFAVGSIFLFTIGGLTGIVPANSGLDIAL 215

[Close]

BLAST of Bhi08M000524 vs. TrEMBL
Match: tr|I1TIB7|I1TIB7_DAUCA (Cytochrome c oxidase subunit 1 OS=Daucus carota subsp. sativus OX=79200 GN=cox1 PE=3 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 1.2e-04
Identity = 28/30 (93.33%), Postives = 28/30 (93.33%), Query Frame = 0


Query: 1   MLFAVESIFLFTIGGLTGIVPENSGLDIAL 31
           MLFAV SIFLFTIGGLTGIVP NSGLDIAL
Sbjct: 311 MLFAVGSIFLFTIGGLTGIVPANSGLDIAL 340

[Close]

BLAST of Bhi08M000524 vs. TrEMBL
Match: tr|A0A088SA88|A0A088SA88_LOBCA (Cytochrome c oxidase subunit 1 (Fragment) OS=Lobelia cardinalis OX=76578 GN=cox1 PE=3 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 1.2e-04
Identity = 28/30 (93.33%), Postives = 28/30 (93.33%), Query Frame = 0


Query: 1   MLFAVESIFLFTIGGLTGIVPENSGLDIAL 31
           MLFAV SIFLFTIGGLTGIVP NSGLDIAL
Sbjct: 186 MLFAVGSIFLFTIGGLTGIVPANSGLDIAL 215

[Close]

BLAST of Bhi08M000524 vs. TrEMBL
Match: tr|A0A088S865|A0A088S865_LOBCA (Cytochrome c oxidase subunit 1 (Fragment) OS=Lobelia cardinalis OX=76578 GN=cox1 PE=3 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 1.2e-04
Identity = 28/30 (93.33%), Postives = 28/30 (93.33%), Query Frame = 0


Query: 1   MLFAVESIFLFTIGGLTGIVPENSGLDIAL 31
           MLFAV SIFLFTIGGLTGIVP NSGLDIAL
Sbjct: 186 MLFAVGSIFLFTIGGLTGIVPANSGLDIAL 215

[Close]

BLAST of Bhi08M000524 vs. NCBI nr
Match: AAB86935.1 (cytochrome oxidase subunit I, partial (mitochondrion) [Peperomia cubensis])

HSP 1 Score: 54.3 bits (129), Expect = 1.9e-04
Identity = 28/30 (93.33%), Postives = 28/30 (93.33%), Query Frame = 0


Query: 1   MLFAVESIFLFTIGGLTGIVPENSGLDIAL 31
           MLFAV SIFLFTIGGLTGIVP NSGLDIAL
Sbjct: 133 MLFAVGSIFLFTIGGLTGIVPANSGLDIAL 162

[Close]

BLAST of Bhi08M000524 vs. NCBI nr
Match: AAF77691.1 (chytochrome oxidase subunit 1, partial (mitochondrion) [Sambucus canadensis])

HSP 1 Score: 54.3 bits (129), Expect = 1.9e-04
Identity = 28/30 (93.33%), Postives = 28/30 (93.33%), Query Frame = 0


Query: 1   MLFAVESIFLFTIGGLTGIVPENSGLDIAL 31
           MLFAV SIFLFTIGGLTGIVP NSGLDIAL
Sbjct: 305 MLFAVGSIFLFTIGGLTGIVPANSGLDIAL 334

[Close]

BLAST of Bhi08M000524 vs. NCBI nr
Match: AAF77689.1 (chytochrome oxidase subunit 1, partial (mitochondrion) [Euptelea polyandra])

HSP 1 Score: 54.3 bits (129), Expect = 1.9e-04
Identity = 28/30 (93.33%), Postives = 28/30 (93.33%), Query Frame = 0


Query: 1   MLFAVESIFLFTIGGLTGIVPENSGLDIAL 31
           MLFAV SIFLFTIGGLTGIVP NSGLDIAL
Sbjct: 305 MLFAVGSIFLFTIGGLTGIVPANSGLDIAL 334

[Close]

BLAST of Bhi08M000524 vs. NCBI nr
Match: AAF77671.1 (chytochrome oxidase subunit 1, partial (mitochondrion) [Austrobaileya scandens])

HSP 1 Score: 54.3 bits (129), Expect = 1.9e-04
Identity = 28/30 (93.33%), Postives = 28/30 (93.33%), Query Frame = 0


Query: 1   MLFAVESIFLFTIGGLTGIVPENSGLDIAL 31
           MLFAV SIFLFTIGGLTGIVP NSGLDIAL
Sbjct: 305 MLFAVGSIFLFTIGGLTGIVPANSGLDIAL 334

[Close]

BLAST of Bhi08M000524 vs. NCBI nr
Match: AAF77677.1 (chytochrome oxidase subunit 1, partial (mitochondrion) [Schisandra sphenanthera])

HSP 1 Score: 54.3 bits (129), Expect = 1.9e-04
Identity = 28/30 (93.33%), Postives = 28/30 (93.33%), Query Frame = 0


Query: 1   MLFAVESIFLFTIGGLTGIVPENSGLDIAL 31
           MLFAV SIFLFTIGGLTGIVP NSGLDIAL
Sbjct: 305 MLFAVGSIFLFTIGGLTGIVPANSGLDIAL 334

The following BLAST results are available for this feature:

BLAST of Bhi08M000524 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|P08743\|COX1_OENBE	3.0e-06	86.67	Cytochrome c oxidase subunit 1 OS=Oenothera berteroana OX=3950 GN=COX1 PE=3 SV=2	[more]
sp\|P12786\|COX1_PEA	3.0e-06	90.00	Cytochrome c oxidase subunit 1 OS=Pisum sativum OX=3888 GN=COX1 PE=3 SV=2	[more]
sp\|P68540\|COX1_AEGCO	4.4e-05	86.67	Cytochrome c oxidase subunit 1 OS=Aegilops columnaris OX=4493 GN=COX1 PE=3 SV=1	[more]
sp\|P60620\|COX1_ARATH	4.4e-05	86.67	Cytochrome c oxidase subunit 1 OS=Arabidopsis thaliana OX=3702 GN=COX1 PE=3 SV=1	[more]
sp\|P08742\|COX1_MAIZE	4.4e-05	86.67	Cytochrome c oxidase subunit 1 OS=Zea mays OX=4577 GN=COX1 PE=3 SV=2	[more]

BLAST of Bhi08M000524 vs. TAIR10


Match Name	E-value	Identity	Description
ATMG01360.1	2.4e-06	86.67	cytochrome oxidase	[more]

BLAST of Bhi08M000524 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A088S8P8\|A0A088S8P8_9ASTR	1.2e-04	93.33	Cytochrome c oxidase subunit 1 (Fragment) OS=Pratia angulata OX=85225 GN=cox1 PE...	[more]
tr\|A0A088S8C0\|A0A088S8C0_9ASTR	1.2e-04	93.33	Cytochrome c oxidase subunit 1 (Fragment) OS=Pratia angulata OX=85225 GN=cox1 PE...	[more]
tr\|I1TIB7\|I1TIB7_DAUCA	1.2e-04	93.33	Cytochrome c oxidase subunit 1 OS=Daucus carota subsp. sativus OX=79200 GN=cox1 ...	[more]
tr\|A0A088SA88\|A0A088SA88_LOBCA	1.2e-04	93.33	Cytochrome c oxidase subunit 1 (Fragment) OS=Lobelia cardinalis OX=76578 GN=cox1...	[more]
tr\|A0A088S865\|A0A088S865_LOBCA	1.2e-04	93.33	Cytochrome c oxidase subunit 1 (Fragment) OS=Lobelia cardinalis OX=76578 GN=cox1...	[more]

BLAST of Bhi08M000524 vs. NCBI nr


Match Name	E-value	Identity	Description
AAB86935.1	1.9e-04	93.33	cytochrome oxidase subunit I, partial (mitochondrion) [Peperomia cubensis]	[more]
AAF77691.1	1.9e-04	93.33	chytochrome oxidase subunit 1, partial (mitochondrion) [Sambucus canadensis]	[more]
AAF77689.1	1.9e-04	93.33	chytochrome oxidase subunit 1, partial (mitochondrion) [Euptelea polyandra]	[more]
AAF77671.1	1.9e-04	93.33	chytochrome oxidase subunit 1, partial (mitochondrion) [Austrobaileya scandens]	[more]
AAF77677.1	1.9e-04	93.33	chytochrome oxidase subunit 1, partial (mitochondrion) [Schisandra sphenanthera]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **Biological Process**
Term	Definition
GO:0055114	oxidation-reduction process

Vocabulary: **INTERPRO**
Term	Definition
IPR036927	Cyt_c_oxase-like_su1_sf

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0055114	oxidation-reduction process

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Bhi08G000524	Bhi08G000524	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.Bhi08M000524	cds.Bhi08M000524	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Bhi08M000524.exon1	Bhi08M000524.exon1	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Bhi08M000524	Bhi08M000524-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036927	Cytochrome c oxidase-like, subunit I superfamily	SUPERFAMILY	SSF81442	Cytochrome c oxidase subunit I-like	coord: 1..31