Bhi08G000524 (gene) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi08G000524
Type	gene
Organism	Benincasa hispida (Wax gourd)
Description	Cytochrome c oxidase subunit 1
Location	chr8 : 20017066 .. 20017272 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTATTTGCTGTAGAGTCCATCTTTTTGTTCACCATAGGAGGACTCACTGGAATAGTCCCGGAAAATTCAGGGCTAGACATTGCTTTGACATCCTCCGGATCTTCGAGCCTGAGCCCACACTCATGCAAGATCCTGTGGGCTCAGCGTACCATGGTCGCCACCTCATTCTCGCAGGCGTTCGTGATAGCCTCAATCGCGGCATAG

mRNA sequence

ATGTTATTTGCTGTAGAGTCCATCTTTTTGTTCACCATAGGAGGACTCACTGGAATAGTCCCGGAAAATTCAGGGCTAGACATTGCTTTGACATCCTCCGGATCTTCGAGCCTGAGCCCACACTCATGCAAGATCCTGTGGGCTCAGCGTACCATGGTCGCCACCTCATTCTCGCAGGCGTTCGTGATAGCCTCAATCGCGGCATAG

Coding sequence (CDS)

ATGTTATTTGCTGTAGAGTCCATCTTTTTGTTCACCATAGGAGGACTCACTGGAATAGTCCCGGAAAATTCAGGGCTAGACATTGCTTTGACATCCTCCGGATCTTCGAGCCTGAGCCCACACTCATGCAAGATCCTGTGGGCTCAGCGTACCATGGTCGCCACCTCATTCTCGCAGGCGTTCGTGATAGCCTCAATCGCGGCATAG

Protein sequence

MLFAVESIFLFTIGGLTGIVPENSGLDIALTSSGSSSLSPHSCKILWAQRTMVATSFSQAFVIASIAA

Homology

[Close]

BLAST of Bhi08G000524 vs. Swiss-Prot
Match: sp|P08743|COX1_OENBE (Cytochrome c oxidase subunit 1 OS=Oenothera berteroana OX=3950 GN=COX1 PE=3 SV=2)

HSP 1 Score: 52.0 bits (123), Expect = 3.0e-06
Identity = 26/30 (86.67%), Postives = 27/30 (90.00%), Query Frame = 0


Query: 1   MLFAVESIFLFTIGGLTGIVPENSGLDIAL 31
           MLFAV SIFLFT+GGL GIVP NSGLDIAL
Sbjct: 340 MLFAVGSIFLFTVGGLAGIVPANSGLDIAL 369

[Close]

BLAST of Bhi08G000524 vs. Swiss-Prot
Match: sp|P12786|COX1_PEA (Cytochrome c oxidase subunit 1 OS=Pisum sativum OX=3888 GN=COX1 PE=3 SV=2)

HSP 1 Score: 52.0 bits (123), Expect = 3.0e-06
Identity = 27/30 (90.00%), Postives = 27/30 (90.00%), Query Frame = 0


Query: 1   MLFAVESIFLFTIGGLTGIVPENSGLDIAL 31
           MLFAV  IFLFTIGGLTGIVP NSGLDIAL
Sbjct: 340 MLFAVGFIFLFTIGGLTGIVPANSGLDIAL 369

[Close]

BLAST of Bhi08G000524 vs. Swiss-Prot
Match: sp|P68540|COX1_AEGCO (Cytochrome c oxidase subunit 1 OS=Aegilops columnaris OX=4493 GN=COX1 PE=3 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 4.4e-05
Identity = 26/30 (86.67%), Postives = 26/30 (86.67%), Query Frame = 0


Query: 1   MLFAVESIFLFTIGGLTGIVPENSGLDIAL 31
           MLFAV  IFLFTIGGLTGIV  NSGLDIAL
Sbjct: 340 MLFAVGFIFLFTIGGLTGIVLANSGLDIAL 369

[Close]

BLAST of Bhi08G000524 vs. Swiss-Prot
Match: sp|P60620|COX1_ARATH (Cytochrome c oxidase subunit 1 OS=Arabidopsis thaliana OX=3702 GN=COX1 PE=3 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 4.4e-05
Identity = 26/30 (86.67%), Postives = 26/30 (86.67%), Query Frame = 0


Query: 1   MLFAVESIFLFTIGGLTGIVPENSGLDIAL 31
           MLFAV  IFLFTIGGLTGIV  NSGLDIAL
Sbjct: 340 MLFAVGFIFLFTIGGLTGIVLANSGLDIAL 369

[Close]

BLAST of Bhi08G000524 vs. Swiss-Prot
Match: sp|P08742|COX1_MAIZE (Cytochrome c oxidase subunit 1 OS=Zea mays OX=4577 GN=COX1 PE=3 SV=2)

HSP 1 Score: 48.1 bits (113), Expect = 4.4e-05
Identity = 26/30 (86.67%), Postives = 26/30 (86.67%), Query Frame = 0


Query: 1   MLFAVESIFLFTIGGLTGIVPENSGLDIAL 31
           MLFAV  IFLFTIGGLTGIV  NSGLDIAL
Sbjct: 340 MLFAVGFIFLFTIGGLTGIVLANSGLDIAL 369

[Close]

BLAST of Bhi08G000524 vs. TAIR10
Match: ATMG01360.1 (cytochrome oxidase)

HSP 1 Score: 48.1 bits (113), Expect = 2.4e-06
Identity = 26/30 (86.67%), Postives = 26/30 (86.67%), Query Frame = 0


Query: 1   MLFAVESIFLFTIGGLTGIVPENSGLDIAL 31
           MLFAV  IFLFTIGGLTGIV  NSGLDIAL
Sbjct: 340 MLFAVGFIFLFTIGGLTGIVLANSGLDIAL 369

[Close]

BLAST of Bhi08G000524 vs. TrEMBL
Match: tr|A0A088S8P8|A0A088S8P8_9ASTR (Cytochrome c oxidase subunit 1 (Fragment) OS=Pratia angulata OX=85225 GN=cox1 PE=3 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 1.2e-04
Identity = 28/30 (93.33%), Postives = 28/30 (93.33%), Query Frame = 0


Query: 1   MLFAVESIFLFTIGGLTGIVPENSGLDIAL 31
           MLFAV SIFLFTIGGLTGIVP NSGLDIAL
Sbjct: 186 MLFAVGSIFLFTIGGLTGIVPANSGLDIAL 215

[Close]

BLAST of Bhi08G000524 vs. TrEMBL
Match: tr|A0A088S8C0|A0A088S8C0_9ASTR (Cytochrome c oxidase subunit 1 (Fragment) OS=Pratia angulata OX=85225 GN=cox1 PE=3 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 1.2e-04
Identity = 28/30 (93.33%), Postives = 28/30 (93.33%), Query Frame = 0


Query: 1   MLFAVESIFLFTIGGLTGIVPENSGLDIAL 31
           MLFAV SIFLFTIGGLTGIVP NSGLDIAL
Sbjct: 186 MLFAVGSIFLFTIGGLTGIVPANSGLDIAL 215

[Close]

BLAST of Bhi08G000524 vs. TrEMBL
Match: tr|I1TIB7|I1TIB7_DAUCA (Cytochrome c oxidase subunit 1 OS=Daucus carota subsp. sativus OX=79200 GN=cox1 PE=3 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 1.2e-04
Identity = 28/30 (93.33%), Postives = 28/30 (93.33%), Query Frame = 0


Query: 1   MLFAVESIFLFTIGGLTGIVPENSGLDIAL 31
           MLFAV SIFLFTIGGLTGIVP NSGLDIAL
Sbjct: 311 MLFAVGSIFLFTIGGLTGIVPANSGLDIAL 340

[Close]

BLAST of Bhi08G000524 vs. TrEMBL
Match: tr|A0A088SA88|A0A088SA88_LOBCA (Cytochrome c oxidase subunit 1 (Fragment) OS=Lobelia cardinalis OX=76578 GN=cox1 PE=3 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 1.2e-04
Identity = 28/30 (93.33%), Postives = 28/30 (93.33%), Query Frame = 0


Query: 1   MLFAVESIFLFTIGGLTGIVPENSGLDIAL 31
           MLFAV SIFLFTIGGLTGIVP NSGLDIAL
Sbjct: 186 MLFAVGSIFLFTIGGLTGIVPANSGLDIAL 215

[Close]

BLAST of Bhi08G000524 vs. TrEMBL
Match: tr|A0A088S865|A0A088S865_LOBCA (Cytochrome c oxidase subunit 1 (Fragment) OS=Lobelia cardinalis OX=76578 GN=cox1 PE=3 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 1.2e-04
Identity = 28/30 (93.33%), Postives = 28/30 (93.33%), Query Frame = 0


Query: 1   MLFAVESIFLFTIGGLTGIVPENSGLDIAL 31
           MLFAV SIFLFTIGGLTGIVP NSGLDIAL
Sbjct: 186 MLFAVGSIFLFTIGGLTGIVPANSGLDIAL 215

[Close]

BLAST of Bhi08G000524 vs. NCBI nr
Match: AAB86935.1 (cytochrome oxidase subunit I, partial (mitochondrion) [Peperomia cubensis])

HSP 1 Score: 54.3 bits (129), Expect = 1.9e-04
Identity = 28/30 (93.33%), Postives = 28/30 (93.33%), Query Frame = 0


Query: 1   MLFAVESIFLFTIGGLTGIVPENSGLDIAL 31
           MLFAV SIFLFTIGGLTGIVP NSGLDIAL
Sbjct: 133 MLFAVGSIFLFTIGGLTGIVPANSGLDIAL 162

[Close]

BLAST of Bhi08G000524 vs. NCBI nr
Match: AAF77691.1 (chytochrome oxidase subunit 1, partial (mitochondrion) [Sambucus canadensis])

HSP 1 Score: 54.3 bits (129), Expect = 1.9e-04
Identity = 28/30 (93.33%), Postives = 28/30 (93.33%), Query Frame = 0


Query: 1   MLFAVESIFLFTIGGLTGIVPENSGLDIAL 31
           MLFAV SIFLFTIGGLTGIVP NSGLDIAL
Sbjct: 305 MLFAVGSIFLFTIGGLTGIVPANSGLDIAL 334

[Close]

BLAST of Bhi08G000524 vs. NCBI nr
Match: AAF77689.1 (chytochrome oxidase subunit 1, partial (mitochondrion) [Euptelea polyandra])

HSP 1 Score: 54.3 bits (129), Expect = 1.9e-04
Identity = 28/30 (93.33%), Postives = 28/30 (93.33%), Query Frame = 0


Query: 1   MLFAVESIFLFTIGGLTGIVPENSGLDIAL 31
           MLFAV SIFLFTIGGLTGIVP NSGLDIAL
Sbjct: 305 MLFAVGSIFLFTIGGLTGIVPANSGLDIAL 334

[Close]

BLAST of Bhi08G000524 vs. NCBI nr
Match: AAF77671.1 (chytochrome oxidase subunit 1, partial (mitochondrion) [Austrobaileya scandens])

HSP 1 Score: 54.3 bits (129), Expect = 1.9e-04
Identity = 28/30 (93.33%), Postives = 28/30 (93.33%), Query Frame = 0


Query: 1   MLFAVESIFLFTIGGLTGIVPENSGLDIAL 31
           MLFAV SIFLFTIGGLTGIVP NSGLDIAL
Sbjct: 305 MLFAVGSIFLFTIGGLTGIVPANSGLDIAL 334

[Close]

BLAST of Bhi08G000524 vs. NCBI nr
Match: AAF77677.1 (chytochrome oxidase subunit 1, partial (mitochondrion) [Schisandra sphenanthera])

HSP 1 Score: 54.3 bits (129), Expect = 1.9e-04
Identity = 28/30 (93.33%), Postives = 28/30 (93.33%), Query Frame = 0


Query: 1   MLFAVESIFLFTIGGLTGIVPENSGLDIAL 31
           MLFAV SIFLFTIGGLTGIVP NSGLDIAL
Sbjct: 305 MLFAVGSIFLFTIGGLTGIVPANSGLDIAL 334

The following BLAST results are available for this feature:

BLAST of Bhi08G000524 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|P08743\|COX1_OENBE	3.0e-06	86.67	Cytochrome c oxidase subunit 1 OS=Oenothera berteroana OX=3950 GN=COX1 PE=3 SV=2	[more]
sp\|P12786\|COX1_PEA	3.0e-06	90.00	Cytochrome c oxidase subunit 1 OS=Pisum sativum OX=3888 GN=COX1 PE=3 SV=2	[more]
sp\|P68540\|COX1_AEGCO	4.4e-05	86.67	Cytochrome c oxidase subunit 1 OS=Aegilops columnaris OX=4493 GN=COX1 PE=3 SV=1	[more]
sp\|P60620\|COX1_ARATH	4.4e-05	86.67	Cytochrome c oxidase subunit 1 OS=Arabidopsis thaliana OX=3702 GN=COX1 PE=3 SV=1	[more]
sp\|P08742\|COX1_MAIZE	4.4e-05	86.67	Cytochrome c oxidase subunit 1 OS=Zea mays OX=4577 GN=COX1 PE=3 SV=2	[more]

BLAST of Bhi08G000524 vs. TAIR10


Match Name	E-value	Identity	Description
ATMG01360.1	2.4e-06	86.67	cytochrome oxidase	[more]

BLAST of Bhi08G000524 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A088S8P8\|A0A088S8P8_9ASTR	1.2e-04	93.33	Cytochrome c oxidase subunit 1 (Fragment) OS=Pratia angulata OX=85225 GN=cox1 PE...	[more]
tr\|A0A088S8C0\|A0A088S8C0_9ASTR	1.2e-04	93.33	Cytochrome c oxidase subunit 1 (Fragment) OS=Pratia angulata OX=85225 GN=cox1 PE...	[more]
tr\|I1TIB7\|I1TIB7_DAUCA	1.2e-04	93.33	Cytochrome c oxidase subunit 1 OS=Daucus carota subsp. sativus OX=79200 GN=cox1 ...	[more]
tr\|A0A088SA88\|A0A088SA88_LOBCA	1.2e-04	93.33	Cytochrome c oxidase subunit 1 (Fragment) OS=Lobelia cardinalis OX=76578 GN=cox1...	[more]
tr\|A0A088S865\|A0A088S865_LOBCA	1.2e-04	93.33	Cytochrome c oxidase subunit 1 (Fragment) OS=Lobelia cardinalis OX=76578 GN=cox1...	[more]

BLAST of Bhi08G000524 vs. NCBI nr


Match Name	E-value	Identity	Description
AAB86935.1	1.9e-04	93.33	cytochrome oxidase subunit I, partial (mitochondrion) [Peperomia cubensis]	[more]
AAF77691.1	1.9e-04	93.33	chytochrome oxidase subunit 1, partial (mitochondrion) [Sambucus canadensis]	[more]
AAF77689.1	1.9e-04	93.33	chytochrome oxidase subunit 1, partial (mitochondrion) [Euptelea polyandra]	[more]
AAF77671.1	1.9e-04	93.33	chytochrome oxidase subunit 1, partial (mitochondrion) [Austrobaileya scandens]	[more]
AAF77677.1	1.9e-04	93.33	chytochrome oxidase subunit 1, partial (mitochondrion) [Schisandra sphenanthera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0055114	oxidation-reduction process

Vocabulary: **INTERPRO**
Term	Definition
IPR036927	Cyt_c_oxase-like_su1_sf

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0055114	oxidation-reduction process

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi08M000524	Bhi08M000524	mRNA

InterPro

Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036927	Cytochrome c oxidase-like, subunit I superfamily	SUPERFAMILY	SSF81442	Cytochrome c oxidase subunit I-like	coord: 1..31

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Bhi08G000524	Cucumber (Chinese Long) v2	cuwgoB048
Bhi08G000524	Cucumber (Chinese Long) v2	cuwgoB635
Bhi08G000524	Bottle gourd (USVL1VR-Ls)	lsiwgoB094
Bhi08G000524	Bottle gourd (USVL1VR-Ls)	lsiwgoB239
Bhi08G000524	Melon (DHL92) v3.6.1	medwgoB147
Bhi08G000524	Melon (DHL92) v3.6.1	medwgoB164
Bhi08G000524	Melon (DHL92) v3.5.1	mewgoB144
Bhi08G000524	Melon (DHL92) v3.5.1	mewgoB161
Bhi08G000524	Watermelon (Charleston Gray)	wcgwgoB315
Bhi08G000524	Watermelon (Charleston Gray)	wcgwgoB340
Bhi08G000524	Watermelon (97103) v2	wgowmbB467
Bhi08G000524	Watermelon (97103) v2	wgowmbB470
Bhi08G000524	Watermelon (97103) v1	wgowmB471
Bhi08G000524	Watermelon (97103) v1	wgowmB520
Bhi08G000524	Silver-seed gourd	carwgoB0393
Bhi08G000524	Silver-seed gourd	carwgoB0426
Bhi08G000524	Silver-seed gourd	carwgoB0468
Bhi08G000524	Silver-seed gourd	carwgoB0535
Bhi08G000524	Wax gourd	wgowgoB103
Bhi08G000524	Cucumber (Gy14) v1	cgywgoB204
Bhi08G000524	Cucumber (Gy14) v2	cgybwgoB045
Bhi08G000524	Cucumber (Gy14) v2	cgybwgoB605
Bhi08G000524	Cucurbita maxima (Rimu)	cmawgoB0252
Bhi08G000524	Cucurbita maxima (Rimu)	cmawgoB0593
Bhi08G000524	Cucurbita maxima (Rimu)	cmawgoB0703
Bhi08G000524	Cucurbita maxima (Rimu)	cmawgoB0769
Bhi08G000524	Cucurbita moschata (Rifu)	cmowgoB0245
Bhi08G000524	Cucurbita moschata (Rifu)	cmowgoB0590
Bhi08G000524	Cucurbita moschata (Rifu)	cmowgoB0761
Bhi08G000524	Cucurbita pepo (Zucchini)	cpewgoB0372
Bhi08G000524	Cucurbita pepo (Zucchini)	cpewgoB0650
Bhi08G000524	Cucurbita pepo (Zucchini)	cpewgoB0697
Bhi08G000524	Cucurbita pepo (Zucchini)	cpewgoB0968
Bhi08G000524	Wild cucumber (PI 183967)	cpiwgoB048
Bhi08G000524	Wild cucumber (PI 183967)	cpiwgoB641
Bhi08G000524	Cucumber (Chinese Long) v3	cucwgoB050
Bhi08G000524	Cucumber (Chinese Long) v3	cucwgoB655