Bhi08M000287 (mRNA) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi08M000287
Type	mRNA
Organism	Benincasa hispida (Wax gourd)
Description	ATP-dependent RNA helicase
Location	chr8 : 11951251 .. 11952505 (-)
Sequence length	468

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTGGGCAATATATCACCTCCAGCGGTGGTGTCATAACTGCTGAAGAACTTGCACCATATCTAAATTTGTCAGAGGGGAACATGGTAAGTTTCAAACTGAAACTGATAGGGGTTGGGGTACCAATGGAAAATATTGATGTCTTTTCAAAGATGTAAACAATTTGGTTAAGGTTTCCAATCATTATTGCTCGACAACTATTTGACAATAGGTGGAATGGAATCAACTCATATTTAAGTGTAATTCAAATCTTAGTTTTCTGTATGAATTTGTTTCATCTTCTTGATGATTGCAGGATGGTGAGTCAGACATTTTACCAGTTCTTTTACGTTTTGATGGCCAACCTGAAATTGATGAAGAGGTATGTTTAACGAGGTATGAAATGCTTGAATGGATACAATTAGCTCAATCTACCCATATTCGATGCCAATAATATGTGAACACAAGTCTGTTGCTAGGTTGAGGCTTGAAGTGTTATGCTAGTTATTTCATCTATTGAGGCTTGAACACAAATCTGAAATTGATGTTAGTTATTTCGTCTATCCCAGAAAGCACAATCTACCCATAGTTGAGGCTTGAACAATGGTTTGAAATTAATGAAGTGTTATTTCGTCTTTAGGGATTAGTGAAGAGGAAGTTTCTTATTACCGGAAGAGTTTGGCTATTCATGTGTCGGGTTTTGACGTTCCCAGGCCAATTAAAACCTTTGAAGGCTTTAGATTTTCCGCTCAACTTATGAATGCTATAAAAAAGCAAGGGTATGAGAAGCCTACTTCTATACAGTGCCAAGCTATGCCAATTGTGCTTTCTGGGAGAGATATCATTAGAATAGCAAAAAATGGTTCGAGTAAGACTGCTGCTTTTGTTTTTCCAATGATTGTTCATATTATGGATCAACTTAAATTTGATCGGCTTAAAGAATTGAAAGCTAGGTGTGAGATAGTTGTTGCCTTTCTTTTTAGTTCTCTTCTTGGGAGAAGTTTTCTAACATTCAGTTTAAATACAAGCTGAACAAAATATAAGCAATAATAATGGTTATATAAGCAGCAAAGATTAACACATATAAAAAGATTAAGGCAATAATGAAGAACAAGTAAAGAGGAGCATAAACTTAAGAATTCTGACTATTAGAATTATGTTCCTTATATTATTTTGGAAATATCCATATGGGTGTGTCAATATTATTTCATTGATGTAGGTGCTCAAAGAGACGAGTTCAAGGTGGGCTACGTTATTCTTGTGGAGGCAGGAGCATAG

mRNA sequence

ATTGGGCAATATATCACCTCCAGCGGTGGTGTCATAACTGCTGAAGAACTTGCACCATATCTAAATTTGTCAGAGGGGAACATGGATGGTGAGTCAGACATTTTACCAGTTCTTTTACGTTTTGATGGCCAACCTGAAATTGATGAAGAGGTATGTTTAACGAGTGTTATTTCGTCTTTAGGGATTAGTGAAGAGGAAGTTTCTTATTACCGGAAGAGTTTGGCTATTCATGTGTCGGGTTTTGACGTTCCCAGGCCAATTAAAACCTTTGAAGGCTTTAGATTTTCCGCTCAACTTATGAATGCTATAAAAAAGCAAGGGTATGAGAAGCCTACTTCTATACAGTGCCAAGCTATGCCAATTGTGCTTTCTGGGAGAGATATCATTAGAATAGCAAAAAATGGTTCGAGTGCTCAAAGAGACGAGTTCAAGGTGGGCTACGTTATTCTTGTGGAGGCAGGAGCATAG

Coding sequence (CDS)

ATTGGGCAATATATCACCTCCAGCGGTGGTGTCATAACTGCTGAAGAACTTGCACCATATCTAAATTTGTCAGAGGGGAACATGGATGGTGAGTCAGACATTTTACCAGTTCTTTTACGTTTTGATGGCCAACCTGAAATTGATGAAGAGGTATGTTTAACGAGTGTTATTTCGTCTTTAGGGATTAGTGAAGAGGAAGTTTCTTATTACCGGAAGAGTTTGGCTATTCATGTGTCGGGTTTTGACGTTCCCAGGCCAATTAAAACCTTTGAAGGCTTTAGATTTTCCGCTCAACTTATGAATGCTATAAAAAAGCAAGGGTATGAGAAGCCTACTTCTATACAGTGCCAAGCTATGCCAATTGTGCTTTCTGGGAGAGATATCATTAGAATAGCAAAAAATGGTTCGAGTGCTCAAAGAGACGAGTTCAAGGTGGGCTACGTTATTCTTGTGGAGGCAGGAGCATAG

Protein sequence

IGQYITSSGGVITAEELAPYLNLSEGNMDGESDILPVLLRFDGQPEIDEEVCLTSVISSLGISEEEVSYYRKSLAIHVSGFDVPRPIKTFEGFRFSAQLMNAIKKQGYEKPTSIQCQAMPIVLSGRDIIRIAKNGSSAQRDEFKVGYVILVEAGA

Homology

[Close]

BLAST of Bhi08M000287 vs. Swiss-Prot
Match: sp|Q10MH8|RH24_ORYSJ (DEAD-box ATP-dependent RNA helicase 24 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0308500 PE=2 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 1.8e-25
Identity = 58/76 (76.32%), Postives = 64/76 (84.21%), Query Frame = 0


Query: 61  GISEEEVSYYRKSLAIHVSGFDVPRPIKTFEGFRFSAQLMNAIKKQGYEKPTSIQCQAMP 120
           G+SE+EV+ Y KSLAI VSGFDVPRPIK+F    F  QLMNAI KQGYEKPT+IQCQA+P
Sbjct: 192 GMSEQEVADYMKSLAIRVSGFDVPRPIKSFADCGFPVQLMNAIAKQGYEKPTTIQCQALP 251

Query: 121 IVLSGRDIIRIAKNGS 137
           IVLSGRDII IAK GS
Sbjct: 252 IVLSGRDIIGIAKTGS 267

[Close]

BLAST of Bhi08M000287 vs. Swiss-Prot
Match: sp|O22907|RH24_ARATH (DEAD-box ATP-dependent RNA helicase 24 OS=Arabidopsis thaliana OX=3702 GN=RH24 PE=1 SV=2)

HSP 1 Score: 110.9 bits (276), Expect = 1.3e-23
Identity = 52/76 (68.42%), Postives = 64/76 (84.21%), Query Frame = 0


Query: 61  GISEEEVSYYRKSLAIHVSGFDVPRPIKTFEGFRFSAQLMNAIKKQGYEKPTSIQCQAMP 120
           G++E+E + YR+ L I VSGFDV RP+KTFE   FS+Q+M+AIKKQ YEKPT+IQCQA+P
Sbjct: 201 GMTEQETTDYRQRLGIRVSGFDVHRPVKTFEDCGFSSQIMSAIKKQAYEKPTAIQCQALP 260

Query: 121 IVLSGRDIIRIAKNGS 137
           IVLSGRD+I IAK GS
Sbjct: 261 IVLSGRDVIGIAKTGS 276

[Close]

BLAST of Bhi08M000287 vs. Swiss-Prot
Match: sp|Q84UQ1|RH42_ORYSJ (DEAD-box ATP-dependent RNA helicase 42 OS=Oryza sativa subsp. japonica OX=39947 GN=Os08g0159900 PE=2 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 4.3e-16
Identity = 41/75 (54.67%), Postives = 56/75 (74.67%), Query Frame = 0


Query: 62  ISEEEVSYYRKSLAIHVSGFDVPRPIKTFEGFRFSAQLMNAIKKQGYEKPTSIQCQAMPI 121
           ++ EEV+ YRK L + V G DVP+PIKT+     +++L++ IKK G+EKP SIQ QA+PI
Sbjct: 398 MAAEEVAAYRKQLELKVHGKDVPKPIKTWVQSGLTSKLLDTIKKLGFEKPMSIQAQALPI 457

Query: 122 VLSGRDIIRIAKNGS 137
           ++SGRD I IAK GS
Sbjct: 458 IMSGRDCIGIAKTGS 472

[Close]

BLAST of Bhi08M000287 vs. Swiss-Prot
Match: sp|Q0J7Y8|RH45_ORYSJ (DEAD-box ATP-dependent RNA helicase 45 OS=Oryza sativa subsp. japonica OX=39947 GN=Os08g0154200 PE=3 SV=2)

HSP 1 Score: 84.0 bits (206), Expect = 1.7e-15
Identity = 40/72 (55.56%), Postives = 54/72 (75.00%), Query Frame = 0


Query: 65  EEVSYYRKSLAIHVSGFDVPRPIKTFEGFRFSAQLMNAIKKQGYEKPTSIQCQAMPIVLS 124
           EEV+ YRK+L + V G DVP+PIKT+     +++L++ IKK G+EKP  IQ QA+PI++S
Sbjct: 262 EEVATYRKNLELKVHGKDVPKPIKTWVQSGLTSKLLDTIKKLGFEKPMPIQAQALPIIMS 321

Query: 125 GRDIIRIAKNGS 137
           GRD I IAK GS
Sbjct: 322 GRDCIGIAKTGS 333

[Close]

BLAST of Bhi08M000287 vs. Swiss-Prot
Match: sp|Q8H0U8|RH42_ARATH (DEAD-box ATP-dependent RNA helicase 42 OS=Arabidopsis thaliana OX=3702 GN=RH42 PE=1 SV=2)

HSP 1 Score: 80.9 bits (198), Expect = 1.4e-14
Identity = 37/75 (49.33%), Postives = 54/75 (72.00%), Query Frame = 0


Query: 62  ISEEEVSYYRKSLAIHVSGFDVPRPIKTFEGFRFSAQLMNAIKKQGYEKPTSIQCQAMPI 121
           +++EEV+ YRK L + V G DVPRPIK +     ++++++ +KK  YEKP  IQ QA+PI
Sbjct: 503 MTQEEVNTYRKELELKVHGKDVPRPIKFWHQTGLTSKILDTMKKLNYEKPMPIQTQALPI 562

Query: 122 VLSGRDIIRIAKNGS 137
           ++SGRD I +AK GS
Sbjct: 563 IMSGRDCIGVAKTGS 577

[Close]

BLAST of Bhi08M000287 vs. TAIR10
Match: AT2G47330.1 (P-loop containing nucleoside triphosphate hydrolases superfamily protein)

HSP 1 Score: 110.9 bits (276), Expect = 7.0e-25
Identity = 52/76 (68.42%), Postives = 64/76 (84.21%), Query Frame = 0


Query: 61  GISEEEVSYYRKSLAIHVSGFDVPRPIKTFEGFRFSAQLMNAIKKQGYEKPTSIQCQAMP 120
           G++E+E + YR+ L I VSGFDV RP+KTFE   FS+Q+M+AIKKQ YEKPT+IQCQA+P
Sbjct: 201 GMTEQETTDYRQRLGIRVSGFDVHRPVKTFEDCGFSSQIMSAIKKQAYEKPTAIQCQALP 260

Query: 121 IVLSGRDIIRIAKNGS 137
           IVLSGRD+I IAK GS
Sbjct: 261 IVLSGRDVIGIAKTGS 276

[Close]

BLAST of Bhi08M000287 vs. TAIR10
Match: AT1G20920.1 (P-loop containing nucleoside triphosphate hydrolases superfamily protein)

HSP 1 Score: 80.9 bits (198), Expect = 7.7e-16
Identity = 37/75 (49.33%), Postives = 54/75 (72.00%), Query Frame = 0


Query: 62  ISEEEVSYYRKSLAIHVSGFDVPRPIKTFEGFRFSAQLMNAIKKQGYEKPTSIQCQAMPI 121
           +++EEV+ YRK L + V G DVPRPIK +     ++++++ +KK  YEKP  IQ QA+PI
Sbjct: 503 MTQEEVNTYRKELELKVHGKDVPRPIKFWHQTGLTSKILDTMKKLNYEKPMPIQTQALPI 562

Query: 122 VLSGRDIIRIAKNGS 137
           ++SGRD I +AK GS
Sbjct: 563 IMSGRDCIGVAKTGS 577

[Close]

BLAST of Bhi08M000287 vs. TAIR10
Match: AT3G09620.1 (P-loop containing nucleoside triphosphate hydrolases superfamily protein)

HSP 1 Score: 76.6 bits (187), Expect = 1.5e-14
Identity = 34/75 (45.33%), Postives = 53/75 (70.67%), Query Frame = 0


Query: 62  ISEEEVSYYRKSLAIHVSGFDVPRPIKTFEGFRFSAQLMNAIKKQGYEKPTSIQCQAMPI 121
           ++++ V+ YRK L + V G DVPRPI+ +     ++++++ +KK  YEKP  IQ QA+PI
Sbjct: 370 MTQDAVNAYRKELELKVHGKDVPRPIQFWHQTGLTSKILDTLKKLNYEKPMPIQAQALPI 429

Query: 122 VLSGRDIIRIAKNGS 137
           ++SGRD I +AK GS
Sbjct: 430 IMSGRDCIGVAKTGS 444

[Close]

BLAST of Bhi08M000287 vs. TAIR10
Match: AT5G03900.2 (Iron-sulphur cluster biosynthesis family protein)

HSP 1 Score: 73.2 bits (178), Expect = 1.6e-13
Identity = 37/52 (71.15%), Postives = 44/52 (84.62%), Query Frame = 0


Query: 1   IGQYITSSGGVITAEELAPYLNL--SEGNMDGESDILPVLLRFDGQPEIDEE 51
           IGQYITS GGV+ A+ELAPYL++  S+  M+ ES ILPVLLRFDGQPE+DEE
Sbjct: 281 IGQYITSRGGVVAADELAPYLDVPSSKSAMNDESYILPVLLRFDGQPELDEE 332

[Close]

BLAST of Bhi08M000287 vs. TAIR10
Match: AT5G63120.2 (P-loop containing nucleoside triphosphate hydrolases superfamily protein)

HSP 1 Score: 72.0 bits (175), Expect = 3.6e-13
Identity = 33/75 (44.00%), Postives = 48/75 (64.00%), Query Frame = 0


Query: 62  ISEEEVSYYRKSLAIHVSGFDVPRPIKTFEGFRFSAQLMNAIKKQGYEKPTSIQCQAMPI 121
           ++E++V+ YR    I V G DVP+P+K F+   F   ++ AI K G+ +PT IQ Q  P+
Sbjct: 139 MTEQDVAMYRTERDISVEGRDVPKPMKMFQDANFPDNILEAIAKLGFTEPTPIQAQGWPM 198

Query: 122 VLSGRDIIRIAKNGS 137
            L GRD+I IA+ GS
Sbjct: 199 ALKGRDLIGIAETGS 213

[Close]

BLAST of Bhi08M000287 vs. TrEMBL
Match: tr|A0A1S3BY83|A0A1S3BY83_CUCME (DEAD-box ATP-dependent RNA helicase 24 OS=Cucumis melo OX=3656 GN=LOC103494724 PE=3 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 6.9e-27
Identity = 66/76 (86.84%), Postives = 67/76 (88.16%), Query Frame = 0


Query: 61  GISEEEVSYYRKSLAIHVSGFDVPRPIKTFEGFRFSAQLMNAIKKQGYEKPTSIQCQAMP 120
           G+SEEEVS YRKSLAI VSGFDVPRPIKTFE   FS QLMNAIKKQGYEKPTSIQCQAMP
Sbjct: 204 GMSEEEVSEYRKSLAIRVSGFDVPRPIKTFEDCGFSPQLMNAIKKQGYEKPTSIQCQAMP 263

Query: 121 IVLSGRDIIRIAKNGS 137
           IVLSG DII IAK GS
Sbjct: 264 IVLSGGDIIGIAKTGS 279

[Close]

BLAST of Bhi08M000287 vs. TrEMBL
Match: tr|A0A0A0KTB5|A0A0A0KTB5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G004270 PE=3 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 9.1e-27
Identity = 65/76 (85.53%), Postives = 67/76 (88.16%), Query Frame = 0


Query: 61  GISEEEVSYYRKSLAIHVSGFDVPRPIKTFEGFRFSAQLMNAIKKQGYEKPTSIQCQAMP 120
           G+SEEEVS YRKSLAI VSGFDVPRP+KTFE   FS QLMNAIKKQGYEKPTSIQCQAMP
Sbjct: 204 GMSEEEVSEYRKSLAIRVSGFDVPRPVKTFEDCGFSPQLMNAIKKQGYEKPTSIQCQAMP 263

Query: 121 IVLSGRDIIRIAKNGS 137
           IVLSG DII IAK GS
Sbjct: 264 IVLSGGDIIGIAKTGS 279

[Close]

BLAST of Bhi08M000287 vs. TrEMBL
Match: tr|W9QCW3|W9QCW3_9ROSA (DEAD-box ATP-dependent RNA helicase 24 OS=Morus notabilis OX=981085 GN=L484_009733 PE=3 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 2.6e-26
Identity = 63/76 (82.89%), Postives = 68/76 (89.47%), Query Frame = 0


Query: 61  GISEEEVSYYRKSLAIHVSGFDVPRPIKTFEGFRFSAQLMNAIKKQGYEKPTSIQCQAMP 120
           G+SE++V+ YRKSLAI VSGFDVPRPIKTFE   FS QLMNAIKKQGYEKPTSIQCQA+P
Sbjct: 104 GMSEQDVAEYRKSLAIRVSGFDVPRPIKTFEDCGFSLQLMNAIKKQGYEKPTSIQCQALP 163

Query: 121 IVLSGRDIIRIAKNGS 137
           IVLSGRDII IAK GS
Sbjct: 164 IVLSGRDIIGIAKTGS 179

[Close]

BLAST of Bhi08M000287 vs. TrEMBL
Match: tr|A0A0L9U9X4|A0A0L9U9X4_PHAAN (Uncharacterized protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan03g277400 PE=3 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 2.6e-26
Identity = 63/89 (70.79%), Postives = 72/89 (80.90%), Query Frame = 0


Query: 48  DEEVCLTSVISSLGISEEEVSYYRKSLAIHVSGFDVPRPIKTFEGFRFSAQLMNAIKKQG 107
           DEEV   +     G+SE++VS YRKSLAI VSGFDVP+PIK FE   F +Q+MNAIKKQG
Sbjct: 135 DEEVYAAAKAVDAGMSEQDVSEYRKSLAIRVSGFDVPKPIKAFEDCGFPSQIMNAIKKQG 194

Query: 108 YEKPTSIQCQAMPIVLSGRDIIRIAKNGS 137
           YEKPTSIQCQA+P+VLSGRDII IAK GS
Sbjct: 195 YEKPTSIQCQALPVVLSGRDIIGIAKTGS 223

[Close]

BLAST of Bhi08M000287 vs. TrEMBL
Match: tr|A0A2N9IP47|A0A2N9IP47_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS54504 PE=3 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 3.4e-26
Identity = 62/76 (81.58%), Postives = 68/76 (89.47%), Query Frame = 0


Query: 61  GISEEEVSYYRKSLAIHVSGFDVPRPIKTFEGFRFSAQLMNAIKKQGYEKPTSIQCQAMP 120
           G+SE++V+ YRKSLAI VSGFDVPRPIKTFE   FS QLMNAIKKQGYEKPTSIQCQA+P
Sbjct: 191 GLSEQDVADYRKSLAIRVSGFDVPRPIKTFEESGFSVQLMNAIKKQGYEKPTSIQCQALP 250

Query: 121 IVLSGRDIIRIAKNGS 137
           IVLSGRD+I IAK GS
Sbjct: 251 IVLSGRDVIGIAKTGS 266

[Close]

BLAST of Bhi08M000287 vs. NCBI nr
Match: XP_022948807.1 (DEAD-box ATP-dependent RNA helicase 24 isoform X2 [Cucurbita moschata])

HSP 1 Score: 131.0 bits (328), Expect = 3.6e-27
Identity = 66/76 (86.84%), Postives = 68/76 (89.47%), Query Frame = 0


Query: 61  GISEEEVSYYRKSLAIHVSGFDVPRPIKTFEGFRFSAQLMNAIKKQGYEKPTSIQCQAMP 120
           G+SEEEVS YRK+LAI VSGFDVPRPIKTFE   FS QLMNAIKKQGYEKPTSIQCQAMP
Sbjct: 204 GMSEEEVSEYRKNLAIRVSGFDVPRPIKTFEDSGFSPQLMNAIKKQGYEKPTSIQCQAMP 263

Query: 121 IVLSGRDIIRIAKNGS 137
           IVLSGRDII IAK GS
Sbjct: 264 IVLSGRDIIGIAKTGS 279

[Close]

BLAST of Bhi08M000287 vs. NCBI nr
Match: XP_022948804.1 (DEAD-box ATP-dependent RNA helicase 24 isoform X1 [Cucurbita moschata])

HSP 1 Score: 131.0 bits (328), Expect = 3.6e-27
Identity = 66/76 (86.84%), Postives = 68/76 (89.47%), Query Frame = 0


Query: 61  GISEEEVSYYRKSLAIHVSGFDVPRPIKTFEGFRFSAQLMNAIKKQGYEKPTSIQCQAMP 120
           G+SEEEVS YRK+LAI VSGFDVPRPIKTFE   FS QLMNAIKKQGYEKPTSIQCQAMP
Sbjct: 204 GMSEEEVSEYRKNLAIRVSGFDVPRPIKTFEDSGFSPQLMNAIKKQGYEKPTSIQCQAMP 263

Query: 121 IVLSGRDIIRIAKNGS 137
           IVLSGRDII IAK GS
Sbjct: 264 IVLSGRDIIGIAKTGS 279

[Close]

BLAST of Bhi08M000287 vs. NCBI nr
Match: XP_022998393.1 (DEAD-box ATP-dependent RNA helicase 24 isoform X1 [Cucurbita maxima])

HSP 1 Score: 131.0 bits (328), Expect = 3.6e-27
Identity = 66/76 (86.84%), Postives = 68/76 (89.47%), Query Frame = 0


Query: 61  GISEEEVSYYRKSLAIHVSGFDVPRPIKTFEGFRFSAQLMNAIKKQGYEKPTSIQCQAMP 120
           G+SEEEVS YRK+LAI VSGFDVPRPIKTFE   FS QLMNAIKKQGYEKPTSIQCQAMP
Sbjct: 204 GMSEEEVSEYRKNLAIRVSGFDVPRPIKTFEDSGFSLQLMNAIKKQGYEKPTSIQCQAMP 263

Query: 121 IVLSGRDIIRIAKNGS 137
           IVLSGRDII IAK GS
Sbjct: 264 IVLSGRDIIGIAKTGS 279

[Close]

BLAST of Bhi08M000287 vs. NCBI nr
Match: XP_022998395.1 (DEAD-box ATP-dependent RNA helicase 24 isoform X2 [Cucurbita maxima])

HSP 1 Score: 131.0 bits (328), Expect = 3.6e-27
Identity = 66/76 (86.84%), Postives = 68/76 (89.47%), Query Frame = 0


Query: 61  GISEEEVSYYRKSLAIHVSGFDVPRPIKTFEGFRFSAQLMNAIKKQGYEKPTSIQCQAMP 120
           G+SEEEVS YRK+LAI VSGFDVPRPIKTFE   FS QLMNAIKKQGYEKPTSIQCQAMP
Sbjct: 204 GMSEEEVSEYRKNLAIRVSGFDVPRPIKTFEDSGFSLQLMNAIKKQGYEKPTSIQCQAMP 263

Query: 121 IVLSGRDIIRIAKNGS 137
           IVLSGRDII IAK GS
Sbjct: 264 IVLSGRDIIGIAKTGS 279

[Close]

BLAST of Bhi08M000287 vs. NCBI nr
Match: XP_023523273.1 (DEAD-box ATP-dependent RNA helicase 24 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 131.0 bits (328), Expect = 3.6e-27
Identity = 66/76 (86.84%), Postives = 68/76 (89.47%), Query Frame = 0


Query: 61  GISEEEVSYYRKSLAIHVSGFDVPRPIKTFEGFRFSAQLMNAIKKQGYEKPTSIQCQAMP 120
           G+SEEEVS YRK+LAI VSGFDVPRPIKTFE   FS QLMNAIKKQGYEKPTSIQCQAMP
Sbjct: 208 GMSEEEVSEYRKNLAIRVSGFDVPRPIKTFEDSGFSPQLMNAIKKQGYEKPTSIQCQAMP 267

Query: 121 IVLSGRDIIRIAKNGS 137
           IVLSGRDII IAK GS
Sbjct: 268 IVLSGRDIIGIAKTGS 283

The following BLAST results are available for this feature:

BLAST of Bhi08M000287 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q10MH8\|RH24_ORYSJ	1.8e-25	76.32	DEAD-box ATP-dependent RNA helicase 24 OS=Oryza sativa subsp. japonica OX=39947 ...	[more]
sp\|O22907\|RH24_ARATH	1.3e-23	68.42	DEAD-box ATP-dependent RNA helicase 24 OS=Arabidopsis thaliana OX=3702 GN=RH24 P...	[more]
sp\|Q84UQ1\|RH42_ORYSJ	4.3e-16	54.67	DEAD-box ATP-dependent RNA helicase 42 OS=Oryza sativa subsp. japonica OX=39947 ...	[more]
sp\|Q0J7Y8\|RH45_ORYSJ	1.7e-15	55.56	DEAD-box ATP-dependent RNA helicase 45 OS=Oryza sativa subsp. japonica OX=39947 ...	[more]
sp\|Q8H0U8\|RH42_ARATH	1.4e-14	49.33	DEAD-box ATP-dependent RNA helicase 42 OS=Arabidopsis thaliana OX=3702 GN=RH42 P...	[more]

BLAST of Bhi08M000287 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G47330.1	7.0e-25	68.42	P-loop containing nucleoside triphosphate hydrolases superfamily protein	[more]
AT1G20920.1	7.7e-16	49.33	P-loop containing nucleoside triphosphate hydrolases superfamily protein	[more]
AT3G09620.1	1.5e-14	45.33	P-loop containing nucleoside triphosphate hydrolases superfamily protein	[more]
AT5G03900.2	1.6e-13	71.15	Iron-sulphur cluster biosynthesis family protein	[more]
AT5G63120.2	3.6e-13	44.00	P-loop containing nucleoside triphosphate hydrolases superfamily protein	[more]

BLAST of Bhi08M000287 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BY83\|A0A1S3BY83_CUCME	6.9e-27	86.84	DEAD-box ATP-dependent RNA helicase 24 OS=Cucumis melo OX=3656 GN=LOC103494724 P...	[more]
tr\|A0A0A0KTB5\|A0A0A0KTB5_CUCSA	9.1e-27	85.53	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G004270 PE=3 SV=1	[more]
tr\|W9QCW3\|W9QCW3_9ROSA	2.6e-26	82.89	DEAD-box ATP-dependent RNA helicase 24 OS=Morus notabilis OX=981085 GN=L484_0097...	[more]
tr\|A0A0L9U9X4\|A0A0L9U9X4_PHAAN	2.6e-26	70.79	Uncharacterized protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan03g277400 PE...	[more]
tr\|A0A2N9IP47\|A0A2N9IP47_FAGSY	3.4e-26	81.58	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS54504 PE=3 SV=1	[more]

BLAST of Bhi08M000287 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022948807.1	3.6e-27	86.84	DEAD-box ATP-dependent RNA helicase 24 isoform X2 [Cucurbita moschata]	[more]
XP_022948804.1	3.6e-27	86.84	DEAD-box ATP-dependent RNA helicase 24 isoform X1 [Cucurbita moschata]	[more]
XP_022998393.1	3.6e-27	86.84	DEAD-box ATP-dependent RNA helicase 24 isoform X1 [Cucurbita maxima]	[more]
XP_022998395.1	3.6e-27	86.84	DEAD-box ATP-dependent RNA helicase 24 isoform X2 [Cucurbita maxima]	[more]
XP_023523273.1	3.6e-27	86.84	DEAD-box ATP-dependent RNA helicase 24 isoform X2 [Cucurbita pepo subsp. pepo]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR027417	P-loop_NTPase
IPR014014	RNA_helicase_DEAD_Q_motif

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003724	RNA helicase activity

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Bhi08G000287	Bhi08G000287	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Bhi08M000287.exon4	Bhi08M000287.exon4	exon
Bhi08M000287.exon3	Bhi08M000287.exon3	exon
Bhi08M000287.exon2	Bhi08M000287.exon2	exon
Bhi08M000287.exon1	Bhi08M000287.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.Bhi08M000287	cds.Bhi08M000287	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Bhi08M000287	Bhi08M000287-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	G3DSA:3.40.50.300		coord: 58..137 e-value: 8.3E-17 score: 63.0
None	No IPR available	PANTHER	PTHR24031:SF531	SUBFAMILY NOT NAMED	coord: 61..143
None	No IPR available	PANTHER	PTHR24031	RNA HELICASE	coord: 61..143
IPR014014	RNA helicase, DEAD-box type, Q motif	PROSITE	PS51195	Q_MOTIF	coord: 88..116 score: 11.145
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	SSF52540	P-loop containing nucleoside triphosphate hydrolases	coord: 70..136