Bhi08G000287 (gene) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi08G000287
Type	gene
Organism	Benincasa hispida (Wax gourd)
Description	ATP-dependent RNA helicase
Location	chr8 : 11951251 .. 11952505 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTGGGCAATATATCACCTCCAGCGGTGGTGTCATAACTGCTGAAGAACTTGCACCATATCTAAATTTGTCAGAGGGGAACATGGTAAGTTTCAAACTGAAACTGATAGGGGTTGGGGTACCAATGGAAAATATTGATGTCTTTTCAAAGATGTAAACAATTTGGTTAAGGTTTCCAATCATTATTGCTCGACAACTATTTGACAATAGGTGGAATGGAATCAACTCATATTTAAGTGTAATTCAAATCTTAGTTTTCTGTATGAATTTGTTTCATCTTCTTGATGATTGCAGGATGGTGAGTCAGACATTTTACCAGTTCTTTTACGTTTTGATGGCCAACCTGAAATTGATGAAGAGGTATGTTTAACGAGGTATGAAATGCTTGAATGGATACAATTAGCTCAATCTACCCATATTCGATGCCAATAATATGTGAACACAAGTCTGTTGCTAGGTTGAGGCTTGAAGTGTTATGCTAGTTATTTCATCTATTGAGGCTTGAACACAAATCTGAAATTGATGTTAGTTATTTCGTCTATCCCAGAAAGCACAATCTACCCATAGTTGAGGCTTGAACAATGGTTTGAAATTAATGAAGTGTTATTTCGTCTTTAGGGATTAGTGAAGAGGAAGTTTCTTATTACCGGAAGAGTTTGGCTATTCATGTGTCGGGTTTTGACGTTCCCAGGCCAATTAAAACCTTTGAAGGCTTTAGATTTTCCGCTCAACTTATGAATGCTATAAAAAAGCAAGGGTATGAGAAGCCTACTTCTATACAGTGCCAAGCTATGCCAATTGTGCTTTCTGGGAGAGATATCATTAGAATAGCAAAAAATGGTTCGAGTAAGACTGCTGCTTTTGTTTTTCCAATGATTGTTCATATTATGGATCAACTTAAATTTGATCGGCTTAAAGAATTGAAAGCTAGGTGTGAGATAGTTGTTGCCTTTCTTTTTAGTTCTCTTCTTGGGAGAAGTTTTCTAACATTCAGTTTAAATACAAGCTGAACAAAATATAAGCAATAATAATGGTTATATAAGCAGCAAAGATTAACACATATAAAAAGATTAAGGCAATAATGAAGAACAAGTAAAGAGGAGCATAAACTTAAGAATTCTGACTATTAGAATTATGTTCCTTATATTATTTTGGAAATATCCATATGGGTGTGTCAATATTATTTCATTGATGTAGGTGCTCAAAGAGACGAGTTCAAGGTGGGCTACGTTATTCTTGTGGAGGCAGGAGCATAG

mRNA sequence

ATTGGGCAATATATCACCTCCAGCGGTGGTGTCATAACTGCTGAAGAACTTGCACCATATCTAAATTTGTCAGAGGGGAACATGGATGGTGAGTCAGACATTTTACCAGTTCTTTTACGTTTTGATGGCCAACCTGAAATTGATGAAGAGGTATGTTTAACGAGTGTTATTTCGTCTTTAGGGATTAGTGAAGAGGAAGTTTCTTATTACCGGAAGAGTTTGGCTATTCATGTGTCGGGTTTTGACGTTCCCAGGCCAATTAAAACCTTTGAAGGCTTTAGATTTTCCGCTCAACTTATGAATGCTATAAAAAAGCAAGGGTATGAGAAGCCTACTTCTATACAGTGCCAAGCTATGCCAATTGTGCTTTCTGGGAGAGATATCATTAGAATAGCAAAAAATGGTTCGAGTGCTCAAAGAGACGAGTTCAAGGTGGGCTACGTTATTCTTGTGGAGGCAGGAGCATAG

Coding sequence (CDS)

ATTGGGCAATATATCACCTCCAGCGGTGGTGTCATAACTGCTGAAGAACTTGCACCATATCTAAATTTGTCAGAGGGGAACATGGATGGTGAGTCAGACATTTTACCAGTTCTTTTACGTTTTGATGGCCAACCTGAAATTGATGAAGAGGTATGTTTAACGAGTGTTATTTCGTCTTTAGGGATTAGTGAAGAGGAAGTTTCTTATTACCGGAAGAGTTTGGCTATTCATGTGTCGGGTTTTGACGTTCCCAGGCCAATTAAAACCTTTGAAGGCTTTAGATTTTCCGCTCAACTTATGAATGCTATAAAAAAGCAAGGGTATGAGAAGCCTACTTCTATACAGTGCCAAGCTATGCCAATTGTGCTTTCTGGGAGAGATATCATTAGAATAGCAAAAAATGGTTCGAGTGCTCAAAGAGACGAGTTCAAGGTGGGCTACGTTATTCTTGTGGAGGCAGGAGCATAG

Protein sequence

IGQYITSSGGVITAEELAPYLNLSEGNMDGESDILPVLLRFDGQPEIDEEVCLTSVISSLGISEEEVSYYRKSLAIHVSGFDVPRPIKTFEGFRFSAQLMNAIKKQGYEKPTSIQCQAMPIVLSGRDIIRIAKNGSSAQRDEFKVGYVILVEAGA

Homology

[Close]

BLAST of Bhi08G000287 vs. Swiss-Prot
Match: sp|Q10MH8|RH24_ORYSJ (DEAD-box ATP-dependent RNA helicase 24 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0308500 PE=2 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 1.8e-25
Identity = 58/76 (76.32%), Postives = 64/76 (84.21%), Query Frame = 0


Query: 61  GISEEEVSYYRKSLAIHVSGFDVPRPIKTFEGFRFSAQLMNAIKKQGYEKPTSIQCQAMP 120
           G+SE+EV+ Y KSLAI VSGFDVPRPIK+F    F  QLMNAI KQGYEKPT+IQCQA+P
Sbjct: 192 GMSEQEVADYMKSLAIRVSGFDVPRPIKSFADCGFPVQLMNAIAKQGYEKPTTIQCQALP 251

Query: 121 IVLSGRDIIRIAKNGS 137
           IVLSGRDII IAK GS
Sbjct: 252 IVLSGRDIIGIAKTGS 267

[Close]

BLAST of Bhi08G000287 vs. Swiss-Prot
Match: sp|O22907|RH24_ARATH (DEAD-box ATP-dependent RNA helicase 24 OS=Arabidopsis thaliana OX=3702 GN=RH24 PE=1 SV=2)

HSP 1 Score: 110.9 bits (276), Expect = 1.3e-23
Identity = 52/76 (68.42%), Postives = 64/76 (84.21%), Query Frame = 0


Query: 61  GISEEEVSYYRKSLAIHVSGFDVPRPIKTFEGFRFSAQLMNAIKKQGYEKPTSIQCQAMP 120
           G++E+E + YR+ L I VSGFDV RP+KTFE   FS+Q+M+AIKKQ YEKPT+IQCQA+P
Sbjct: 201 GMTEQETTDYRQRLGIRVSGFDVHRPVKTFEDCGFSSQIMSAIKKQAYEKPTAIQCQALP 260

Query: 121 IVLSGRDIIRIAKNGS 137
           IVLSGRD+I IAK GS
Sbjct: 261 IVLSGRDVIGIAKTGS 276

[Close]

BLAST of Bhi08G000287 vs. Swiss-Prot
Match: sp|Q84UQ1|RH42_ORYSJ (DEAD-box ATP-dependent RNA helicase 42 OS=Oryza sativa subsp. japonica OX=39947 GN=Os08g0159900 PE=2 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 4.3e-16
Identity = 41/75 (54.67%), Postives = 56/75 (74.67%), Query Frame = 0


Query: 62  ISEEEVSYYRKSLAIHVSGFDVPRPIKTFEGFRFSAQLMNAIKKQGYEKPTSIQCQAMPI 121
           ++ EEV+ YRK L + V G DVP+PIKT+     +++L++ IKK G+EKP SIQ QA+PI
Sbjct: 398 MAAEEVAAYRKQLELKVHGKDVPKPIKTWVQSGLTSKLLDTIKKLGFEKPMSIQAQALPI 457

Query: 122 VLSGRDIIRIAKNGS 137
           ++SGRD I IAK GS
Sbjct: 458 IMSGRDCIGIAKTGS 472

[Close]

BLAST of Bhi08G000287 vs. Swiss-Prot
Match: sp|Q0J7Y8|RH45_ORYSJ (DEAD-box ATP-dependent RNA helicase 45 OS=Oryza sativa subsp. japonica OX=39947 GN=Os08g0154200 PE=3 SV=2)

HSP 1 Score: 84.0 bits (206), Expect = 1.7e-15
Identity = 40/72 (55.56%), Postives = 54/72 (75.00%), Query Frame = 0


Query: 65  EEVSYYRKSLAIHVSGFDVPRPIKTFEGFRFSAQLMNAIKKQGYEKPTSIQCQAMPIVLS 124
           EEV+ YRK+L + V G DVP+PIKT+     +++L++ IKK G+EKP  IQ QA+PI++S
Sbjct: 262 EEVATYRKNLELKVHGKDVPKPIKTWVQSGLTSKLLDTIKKLGFEKPMPIQAQALPIIMS 321

Query: 125 GRDIIRIAKNGS 137
           GRD I IAK GS
Sbjct: 322 GRDCIGIAKTGS 333

[Close]

BLAST of Bhi08G000287 vs. Swiss-Prot
Match: sp|Q8H0U8|RH42_ARATH (DEAD-box ATP-dependent RNA helicase 42 OS=Arabidopsis thaliana OX=3702 GN=RH42 PE=1 SV=2)

HSP 1 Score: 80.9 bits (198), Expect = 1.4e-14
Identity = 37/75 (49.33%), Postives = 54/75 (72.00%), Query Frame = 0


Query: 62  ISEEEVSYYRKSLAIHVSGFDVPRPIKTFEGFRFSAQLMNAIKKQGYEKPTSIQCQAMPI 121
           +++EEV+ YRK L + V G DVPRPIK +     ++++++ +KK  YEKP  IQ QA+PI
Sbjct: 503 MTQEEVNTYRKELELKVHGKDVPRPIKFWHQTGLTSKILDTMKKLNYEKPMPIQTQALPI 562

Query: 122 VLSGRDIIRIAKNGS 137
           ++SGRD I +AK GS
Sbjct: 563 IMSGRDCIGVAKTGS 577

[Close]

BLAST of Bhi08G000287 vs. TAIR10
Match: AT2G47330.1 (P-loop containing nucleoside triphosphate hydrolases superfamily protein)

HSP 1 Score: 110.9 bits (276), Expect = 7.0e-25
Identity = 52/76 (68.42%), Postives = 64/76 (84.21%), Query Frame = 0


Query: 61  GISEEEVSYYRKSLAIHVSGFDVPRPIKTFEGFRFSAQLMNAIKKQGYEKPTSIQCQAMP 120
           G++E+E + YR+ L I VSGFDV RP+KTFE   FS+Q+M+AIKKQ YEKPT+IQCQA+P
Sbjct: 201 GMTEQETTDYRQRLGIRVSGFDVHRPVKTFEDCGFSSQIMSAIKKQAYEKPTAIQCQALP 260

Query: 121 IVLSGRDIIRIAKNGS 137
           IVLSGRD+I IAK GS
Sbjct: 261 IVLSGRDVIGIAKTGS 276

[Close]

BLAST of Bhi08G000287 vs. TAIR10
Match: AT1G20920.1 (P-loop containing nucleoside triphosphate hydrolases superfamily protein)

HSP 1 Score: 80.9 bits (198), Expect = 7.7e-16
Identity = 37/75 (49.33%), Postives = 54/75 (72.00%), Query Frame = 0


Query: 62  ISEEEVSYYRKSLAIHVSGFDVPRPIKTFEGFRFSAQLMNAIKKQGYEKPTSIQCQAMPI 121
           +++EEV+ YRK L + V G DVPRPIK +     ++++++ +KK  YEKP  IQ QA+PI
Sbjct: 503 MTQEEVNTYRKELELKVHGKDVPRPIKFWHQTGLTSKILDTMKKLNYEKPMPIQTQALPI 562

Query: 122 VLSGRDIIRIAKNGS 137
           ++SGRD I +AK GS
Sbjct: 563 IMSGRDCIGVAKTGS 577

[Close]

BLAST of Bhi08G000287 vs. TAIR10
Match: AT3G09620.1 (P-loop containing nucleoside triphosphate hydrolases superfamily protein)

HSP 1 Score: 76.6 bits (187), Expect = 1.5e-14
Identity = 34/75 (45.33%), Postives = 53/75 (70.67%), Query Frame = 0


Query: 62  ISEEEVSYYRKSLAIHVSGFDVPRPIKTFEGFRFSAQLMNAIKKQGYEKPTSIQCQAMPI 121
           ++++ V+ YRK L + V G DVPRPI+ +     ++++++ +KK  YEKP  IQ QA+PI
Sbjct: 370 MTQDAVNAYRKELELKVHGKDVPRPIQFWHQTGLTSKILDTLKKLNYEKPMPIQAQALPI 429

Query: 122 VLSGRDIIRIAKNGS 137
           ++SGRD I +AK GS
Sbjct: 430 IMSGRDCIGVAKTGS 444

[Close]

BLAST of Bhi08G000287 vs. TAIR10
Match: AT5G03900.2 (Iron-sulphur cluster biosynthesis family protein)

HSP 1 Score: 73.2 bits (178), Expect = 1.6e-13
Identity = 37/52 (71.15%), Postives = 44/52 (84.62%), Query Frame = 0


Query: 1   IGQYITSSGGVITAEELAPYLNL--SEGNMDGESDILPVLLRFDGQPEIDEE 51
           IGQYITS GGV+ A+ELAPYL++  S+  M+ ES ILPVLLRFDGQPE+DEE
Sbjct: 281 IGQYITSRGGVVAADELAPYLDVPSSKSAMNDESYILPVLLRFDGQPELDEE 332

[Close]

BLAST of Bhi08G000287 vs. TAIR10
Match: AT5G63120.2 (P-loop containing nucleoside triphosphate hydrolases superfamily protein)

HSP 1 Score: 72.0 bits (175), Expect = 3.6e-13
Identity = 33/75 (44.00%), Postives = 48/75 (64.00%), Query Frame = 0


Query: 62  ISEEEVSYYRKSLAIHVSGFDVPRPIKTFEGFRFSAQLMNAIKKQGYEKPTSIQCQAMPI 121
           ++E++V+ YR    I V G DVP+P+K F+   F   ++ AI K G+ +PT IQ Q  P+
Sbjct: 139 MTEQDVAMYRTERDISVEGRDVPKPMKMFQDANFPDNILEAIAKLGFTEPTPIQAQGWPM 198

Query: 122 VLSGRDIIRIAKNGS 137
            L GRD+I IA+ GS
Sbjct: 199 ALKGRDLIGIAETGS 213

[Close]

BLAST of Bhi08G000287 vs. TrEMBL
Match: tr|A0A1S3BY83|A0A1S3BY83_CUCME (DEAD-box ATP-dependent RNA helicase 24 OS=Cucumis melo OX=3656 GN=LOC103494724 PE=3 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 6.9e-27
Identity = 66/76 (86.84%), Postives = 67/76 (88.16%), Query Frame = 0


Query: 61  GISEEEVSYYRKSLAIHVSGFDVPRPIKTFEGFRFSAQLMNAIKKQGYEKPTSIQCQAMP 120
           G+SEEEVS YRKSLAI VSGFDVPRPIKTFE   FS QLMNAIKKQGYEKPTSIQCQAMP
Sbjct: 204 GMSEEEVSEYRKSLAIRVSGFDVPRPIKTFEDCGFSPQLMNAIKKQGYEKPTSIQCQAMP 263

Query: 121 IVLSGRDIIRIAKNGS 137
           IVLSG DII IAK GS
Sbjct: 264 IVLSGGDIIGIAKTGS 279

[Close]

BLAST of Bhi08G000287 vs. TrEMBL
Match: tr|A0A0A0KTB5|A0A0A0KTB5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G004270 PE=3 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 9.1e-27
Identity = 65/76 (85.53%), Postives = 67/76 (88.16%), Query Frame = 0


Query: 61  GISEEEVSYYRKSLAIHVSGFDVPRPIKTFEGFRFSAQLMNAIKKQGYEKPTSIQCQAMP 120
           G+SEEEVS YRKSLAI VSGFDVPRP+KTFE   FS QLMNAIKKQGYEKPTSIQCQAMP
Sbjct: 204 GMSEEEVSEYRKSLAIRVSGFDVPRPVKTFEDCGFSPQLMNAIKKQGYEKPTSIQCQAMP 263

Query: 121 IVLSGRDIIRIAKNGS 137
           IVLSG DII IAK GS
Sbjct: 264 IVLSGGDIIGIAKTGS 279

[Close]

BLAST of Bhi08G000287 vs. TrEMBL
Match: tr|W9QCW3|W9QCW3_9ROSA (DEAD-box ATP-dependent RNA helicase 24 OS=Morus notabilis OX=981085 GN=L484_009733 PE=3 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 2.6e-26
Identity = 63/76 (82.89%), Postives = 68/76 (89.47%), Query Frame = 0


Query: 61  GISEEEVSYYRKSLAIHVSGFDVPRPIKTFEGFRFSAQLMNAIKKQGYEKPTSIQCQAMP 120
           G+SE++V+ YRKSLAI VSGFDVPRPIKTFE   FS QLMNAIKKQGYEKPTSIQCQA+P
Sbjct: 104 GMSEQDVAEYRKSLAIRVSGFDVPRPIKTFEDCGFSLQLMNAIKKQGYEKPTSIQCQALP 163

Query: 121 IVLSGRDIIRIAKNGS 137
           IVLSGRDII IAK GS
Sbjct: 164 IVLSGRDIIGIAKTGS 179

[Close]

BLAST of Bhi08G000287 vs. TrEMBL
Match: tr|A0A0L9U9X4|A0A0L9U9X4_PHAAN (Uncharacterized protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan03g277400 PE=3 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 2.6e-26
Identity = 63/89 (70.79%), Postives = 72/89 (80.90%), Query Frame = 0


Query: 48  DEEVCLTSVISSLGISEEEVSYYRKSLAIHVSGFDVPRPIKTFEGFRFSAQLMNAIKKQG 107
           DEEV   +     G+SE++VS YRKSLAI VSGFDVP+PIK FE   F +Q+MNAIKKQG
Sbjct: 135 DEEVYAAAKAVDAGMSEQDVSEYRKSLAIRVSGFDVPKPIKAFEDCGFPSQIMNAIKKQG 194

Query: 108 YEKPTSIQCQAMPIVLSGRDIIRIAKNGS 137
           YEKPTSIQCQA+P+VLSGRDII IAK GS
Sbjct: 195 YEKPTSIQCQALPVVLSGRDIIGIAKTGS 223

[Close]

BLAST of Bhi08G000287 vs. TrEMBL
Match: tr|A0A2N9IP47|A0A2N9IP47_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS54504 PE=3 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 3.4e-26
Identity = 62/76 (81.58%), Postives = 68/76 (89.47%), Query Frame = 0


Query: 61  GISEEEVSYYRKSLAIHVSGFDVPRPIKTFEGFRFSAQLMNAIKKQGYEKPTSIQCQAMP 120
           G+SE++V+ YRKSLAI VSGFDVPRPIKTFE   FS QLMNAIKKQGYEKPTSIQCQA+P
Sbjct: 191 GLSEQDVADYRKSLAIRVSGFDVPRPIKTFEESGFSVQLMNAIKKQGYEKPTSIQCQALP 250

Query: 121 IVLSGRDIIRIAKNGS 137
           IVLSGRD+I IAK GS
Sbjct: 251 IVLSGRDVIGIAKTGS 266

[Close]

BLAST of Bhi08G000287 vs. NCBI nr
Match: XP_022948807.1 (DEAD-box ATP-dependent RNA helicase 24 isoform X2 [Cucurbita moschata])

HSP 1 Score: 131.0 bits (328), Expect = 3.6e-27
Identity = 66/76 (86.84%), Postives = 68/76 (89.47%), Query Frame = 0


Query: 61  GISEEEVSYYRKSLAIHVSGFDVPRPIKTFEGFRFSAQLMNAIKKQGYEKPTSIQCQAMP 120
           G+SEEEVS YRK+LAI VSGFDVPRPIKTFE   FS QLMNAIKKQGYEKPTSIQCQAMP
Sbjct: 204 GMSEEEVSEYRKNLAIRVSGFDVPRPIKTFEDSGFSPQLMNAIKKQGYEKPTSIQCQAMP 263

Query: 121 IVLSGRDIIRIAKNGS 137
           IVLSGRDII IAK GS
Sbjct: 264 IVLSGRDIIGIAKTGS 279

[Close]

BLAST of Bhi08G000287 vs. NCBI nr
Match: XP_022948804.1 (DEAD-box ATP-dependent RNA helicase 24 isoform X1 [Cucurbita moschata])

HSP 1 Score: 131.0 bits (328), Expect = 3.6e-27
Identity = 66/76 (86.84%), Postives = 68/76 (89.47%), Query Frame = 0


Query: 61  GISEEEVSYYRKSLAIHVSGFDVPRPIKTFEGFRFSAQLMNAIKKQGYEKPTSIQCQAMP 120
           G+SEEEVS YRK+LAI VSGFDVPRPIKTFE   FS QLMNAIKKQGYEKPTSIQCQAMP
Sbjct: 204 GMSEEEVSEYRKNLAIRVSGFDVPRPIKTFEDSGFSPQLMNAIKKQGYEKPTSIQCQAMP 263

Query: 121 IVLSGRDIIRIAKNGS 137
           IVLSGRDII IAK GS
Sbjct: 264 IVLSGRDIIGIAKTGS 279

[Close]

BLAST of Bhi08G000287 vs. NCBI nr
Match: XP_022998393.1 (DEAD-box ATP-dependent RNA helicase 24 isoform X1 [Cucurbita maxima])

HSP 1 Score: 131.0 bits (328), Expect = 3.6e-27
Identity = 66/76 (86.84%), Postives = 68/76 (89.47%), Query Frame = 0


Query: 61  GISEEEVSYYRKSLAIHVSGFDVPRPIKTFEGFRFSAQLMNAIKKQGYEKPTSIQCQAMP 120
           G+SEEEVS YRK+LAI VSGFDVPRPIKTFE   FS QLMNAIKKQGYEKPTSIQCQAMP
Sbjct: 204 GMSEEEVSEYRKNLAIRVSGFDVPRPIKTFEDSGFSLQLMNAIKKQGYEKPTSIQCQAMP 263

Query: 121 IVLSGRDIIRIAKNGS 137
           IVLSGRDII IAK GS
Sbjct: 264 IVLSGRDIIGIAKTGS 279

[Close]

BLAST of Bhi08G000287 vs. NCBI nr
Match: XP_022998395.1 (DEAD-box ATP-dependent RNA helicase 24 isoform X2 [Cucurbita maxima])

HSP 1 Score: 131.0 bits (328), Expect = 3.6e-27
Identity = 66/76 (86.84%), Postives = 68/76 (89.47%), Query Frame = 0


Query: 61  GISEEEVSYYRKSLAIHVSGFDVPRPIKTFEGFRFSAQLMNAIKKQGYEKPTSIQCQAMP 120
           G+SEEEVS YRK+LAI VSGFDVPRPIKTFE   FS QLMNAIKKQGYEKPTSIQCQAMP
Sbjct: 204 GMSEEEVSEYRKNLAIRVSGFDVPRPIKTFEDSGFSLQLMNAIKKQGYEKPTSIQCQAMP 263

Query: 121 IVLSGRDIIRIAKNGS 137
           IVLSGRDII IAK GS
Sbjct: 264 IVLSGRDIIGIAKTGS 279

[Close]

BLAST of Bhi08G000287 vs. NCBI nr
Match: XP_023523273.1 (DEAD-box ATP-dependent RNA helicase 24 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 131.0 bits (328), Expect = 3.6e-27
Identity = 66/76 (86.84%), Postives = 68/76 (89.47%), Query Frame = 0


Query: 61  GISEEEVSYYRKSLAIHVSGFDVPRPIKTFEGFRFSAQLMNAIKKQGYEKPTSIQCQAMP 120
           G+SEEEVS YRK+LAI VSGFDVPRPIKTFE   FS QLMNAIKKQGYEKPTSIQCQAMP
Sbjct: 208 GMSEEEVSEYRKNLAIRVSGFDVPRPIKTFEDSGFSPQLMNAIKKQGYEKPTSIQCQAMP 267

Query: 121 IVLSGRDIIRIAKNGS 137
           IVLSGRDII IAK GS
Sbjct: 268 IVLSGRDIIGIAKTGS 283

The following BLAST results are available for this feature:

BLAST of Bhi08G000287 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q10MH8\|RH24_ORYSJ	1.8e-25	76.32	DEAD-box ATP-dependent RNA helicase 24 OS=Oryza sativa subsp. japonica OX=39947 ...	[more]
sp\|O22907\|RH24_ARATH	1.3e-23	68.42	DEAD-box ATP-dependent RNA helicase 24 OS=Arabidopsis thaliana OX=3702 GN=RH24 P...	[more]
sp\|Q84UQ1\|RH42_ORYSJ	4.3e-16	54.67	DEAD-box ATP-dependent RNA helicase 42 OS=Oryza sativa subsp. japonica OX=39947 ...	[more]
sp\|Q0J7Y8\|RH45_ORYSJ	1.7e-15	55.56	DEAD-box ATP-dependent RNA helicase 45 OS=Oryza sativa subsp. japonica OX=39947 ...	[more]
sp\|Q8H0U8\|RH42_ARATH	1.4e-14	49.33	DEAD-box ATP-dependent RNA helicase 42 OS=Arabidopsis thaliana OX=3702 GN=RH42 P...	[more]

BLAST of Bhi08G000287 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G47330.1	7.0e-25	68.42	P-loop containing nucleoside triphosphate hydrolases superfamily protein	[more]
AT1G20920.1	7.7e-16	49.33	P-loop containing nucleoside triphosphate hydrolases superfamily protein	[more]
AT3G09620.1	1.5e-14	45.33	P-loop containing nucleoside triphosphate hydrolases superfamily protein	[more]
AT5G03900.2	1.6e-13	71.15	Iron-sulphur cluster biosynthesis family protein	[more]
AT5G63120.2	3.6e-13	44.00	P-loop containing nucleoside triphosphate hydrolases superfamily protein	[more]

BLAST of Bhi08G000287 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BY83\|A0A1S3BY83_CUCME	6.9e-27	86.84	DEAD-box ATP-dependent RNA helicase 24 OS=Cucumis melo OX=3656 GN=LOC103494724 P...	[more]
tr\|A0A0A0KTB5\|A0A0A0KTB5_CUCSA	9.1e-27	85.53	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G004270 PE=3 SV=1	[more]
tr\|W9QCW3\|W9QCW3_9ROSA	2.6e-26	82.89	DEAD-box ATP-dependent RNA helicase 24 OS=Morus notabilis OX=981085 GN=L484_0097...	[more]
tr\|A0A0L9U9X4\|A0A0L9U9X4_PHAAN	2.6e-26	70.79	Uncharacterized protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan03g277400 PE...	[more]
tr\|A0A2N9IP47\|A0A2N9IP47_FAGSY	3.4e-26	81.58	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS54504 PE=3 SV=1	[more]

BLAST of Bhi08G000287 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022948807.1	3.6e-27	86.84	DEAD-box ATP-dependent RNA helicase 24 isoform X2 [Cucurbita moschata]	[more]
XP_022948804.1	3.6e-27	86.84	DEAD-box ATP-dependent RNA helicase 24 isoform X1 [Cucurbita moschata]	[more]
XP_022998393.1	3.6e-27	86.84	DEAD-box ATP-dependent RNA helicase 24 isoform X1 [Cucurbita maxima]	[more]
XP_022998395.1	3.6e-27	86.84	DEAD-box ATP-dependent RNA helicase 24 isoform X2 [Cucurbita maxima]	[more]
XP_023523273.1	3.6e-27	86.84	DEAD-box ATP-dependent RNA helicase 24 isoform X2 [Cucurbita pepo subsp. pepo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR027417	P-loop_NTPase
IPR014014	RNA_helicase_DEAD_Q_motif

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003724	RNA helicase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi08M000287	Bhi08M000287	mRNA

InterPro

Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	G3DSA:3.40.50.300		coord: 58..137 e-value: 8.3E-17 score: 63.0
None	No IPR available	PANTHER	PTHR24031:SF531	SUBFAMILY NOT NAMED	coord: 61..143
None	No IPR available	PANTHER	PTHR24031	RNA HELICASE	coord: 61..143
IPR014014	RNA helicase, DEAD-box type, Q motif	PROSITE	PS51195	Q_MOTIF	coord: 88..116 score: 11.145
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	SSF52540	P-loop containing nucleoside triphosphate hydrolases	coord: 70..136

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Bhi08G000287	Cucumber (Gy14) v1	cgywgoB434
Bhi08G000287	Cucumber (Gy14) v2	cgybwgoB034
Bhi08G000287	Cucurbita maxima (Rimu)	cmawgoB0259
Bhi08G000287	Cucurbita maxima (Rimu)	cmawgoB0595
Bhi08G000287	Cucurbita moschata (Rifu)	cmowgoB0252
Bhi08G000287	Cucurbita moschata (Rifu)	cmowgoB0592
Bhi08G000287	Cucurbita pepo (Zucchini)	cpewgoB0636
Bhi08G000287	Cucurbita pepo (Zucchini)	cpewgoB0657
Bhi08G000287	Cucurbita pepo (Zucchini)	cpewgoB0699
Bhi08G000287	Wild cucumber (PI 183967)	cpiwgoB037
Bhi08G000287	Cucumber (Chinese Long) v3	cucwgoB040
Bhi08G000287	Cucumber (Chinese Long) v2	cuwgoB037
Bhi08G000287	Bottle gourd (USVL1VR-Ls)	lsiwgoB093
Bhi08G000287	Bottle gourd (USVL1VR-Ls)	lsiwgoB246
Bhi08G000287	Melon (DHL92) v3.6.1	medwgoB169
Bhi08G000287	Melon (DHL92) v3.5.1	mewgoB145
Bhi08G000287	Melon (DHL92) v3.5.1	mewgoB166
Bhi08G000287	Watermelon (Charleston Gray)	wcgwgoB317
Bhi08G000287	Watermelon (Charleston Gray)	wcgwgoB346
Bhi08G000287	Watermelon (97103) v2	wgowmbB469
Bhi08G000287	Watermelon (97103) v2	wgowmbB476
Bhi08G000287	Watermelon (97103) v1	wgowmB477
Bhi08G000287	Watermelon (97103) v1	wgowmB522
Bhi08G000287	Silver-seed gourd	carwgoB0536
Bhi08G000287	Silver-seed gourd	carwgoB0860
Bhi08G000287	Silver-seed gourd	carwgoB0857