Bhi07M000986 (mRNA) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi07M000986
Type	mRNA
Organism	Benincasa hispida (Wax gourd)
Description	Unknown protein
Location	chr7 : 36679114 .. 36680442 (-)
Sequence length	279

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGTAATCGTAAAGGCTATGCTCGACTAGCCGAAGGTTTGGTAAAAATTTACGTAATACTAATAGCATTATTATAATTAGCACTAGAGATAATATATAACAAAATATTTTTTTCCCATGTAGAAAAATTCTTCTTCTTCAACTCCAATTACCCGAGTAGATGTTTGGACAAAAGCACAAGTGAAGAAAGATGGAAAACTCATTAACTCCCAAGTGGCCAAAACTCTTGTTAGATTATTTTTTGTATTTTTTCTTAATTTTTTTATAGGTCTTAAGTCGTATAAATCTCTCTTGTGGGCTTATGTTATTTGCTATAAATTGAGTTATATCTATAGTTTTTTAATGTTGTGAATTCGTGTTCGTCATAAGACATCCCCCCTTTCTCTTAAATGAACTTTTTTTTTTGTTCAGTGCTTTATTGAGTGATCTCTTATTGGCTTGTTGGCATTTTGAGTAGTAATTTAGTTCAAGTAGGAGATTCTAAATGTTGTGAATTCGTGTTCGTCTTAAGGCATTCCCCCCCAAATGAAGTTTTTTTTTTCATGTTCAATGCCTTTATTGAGTTGGTTTTGTTTGAGTGATCTCTTGTTGGCTTGTTGGTATTTTGAGTAGTAATTTTGTTCAAGTAGGAGTTTCTAAATGTTGTGAATTCGTGTTCGTCATAAGTCATCCCCCCTCCCTCCCCTCTCATTTAAATGAACTTTTTCTATGTTAAATGCTTTATTGAGTTGTTTTTTTAGTAATCTCTTGTTGGTTTGTTGGCATTTGAGTAGTAATTTAGTTCAAGTAGGAGTTTCTAAATGTTGTGGATTTGTGTTGGTCATAAGACATCCCCTCTCCCCCTCTTAAATGATCTTTTTTTTTTTTTTTTAATGTTTAATGCTTTATTTAGTTGGTTTTGTTTAAGTGATCTCTTGTTGGCATGTTGTCATTTCAATAATGATTTAGTTCAAGTAGAAGTTTCTAAATGTTGTGAATTTGTGTTGATTATAAGCGCCCCCCCCAACAAAAAAAAATGGCTCATTGACTTCTTGCCATTTGAACGATTTCATGCATTTTTTTCTTAGGAGCATATTGAACAAAAACATGTGGGAACATCTCGTTCAAGTAGTATAATTGACGATGCAATTAGTAGAGTTTTCGGTCCCAATCATGGCCATGTACGAGGATTAGGATTCGGTGTAACTAGATCAAAGTTGTCTACATCAACTCAGGAAGATAAGACTATTGCGTCTCTTGAAAGAAAATGTAACAACCTAACAACAGATGTAGATGAATTGAAAAGCGTGGCAGCTTCCTTAATAAGGGACAAGGTAAAATTGTCCTAA

mRNA sequence

ATGTGTAATCGTAAAGGCTATGCTCGACTAGCCGAAGGTTTGGAGCATATTGAACAAAAACATGTGGGAACATCTCGTTCAAGTAGTATAATTGACGATGCAATTAGTAGAGTTTTCGGATTAGGATTCGGTGTAACTAGATCAAAGTTGTCTACATCAACTCAGGAAGATAAGACTATTGCGTCTCTTGAAAGAAAATGTAACAACCTAACAACAGATGTAGATGAATTGAAAAGCGTGGCAGCTTCCTTAATAAGGGACAAGGTAAAATTGTCCTAA

Coding sequence (CDS)

ATGTGTAATCGTAAAGGCTATGCTCGACTAGCCGAAGGTTTGGAGCATATTGAACAAAAACATGTGGGAACATCTCGTTCAAGTAGTATAATTGACGATGCAATTAGTAGAGTTTTCGGATTAGGATTCGGTGTAACTAGATCAAAGTTGTCTACATCAACTCAGGAAGATAAGACTATTGCGTCTCTTGAAAGAAAATGTAACAACCTAACAACAGATGTAGATGAATTGAAAAGCGTGGCAGCTTCCTTAATAAGGGACAAGGTAAAATTGTCCTAA

Protein sequence

MCNRKGYARLAEGLEHIEQKHVGTSRSSSIIDDAISRVFGLGFGVTRSKLSTSTQEDKTIASLERKCNNLTTDVDELKSVAASLIRDKVKLS

Homology

[Close]

BLAST of Bhi07M000986 vs. NCBI nr
Match: XP_022158575.1 (uncharacterized protein LOC111025029 [Momordica charantia])

HSP 1 Score: 74.3 bits (181), Expect = 2.4e-10
Identity = 41/99 (41.41%), Postives = 61/99 (61.62%), Query Frame = 0


Query: 2   CNRKGYARLAEGLEHIEQKHVGTSRSSSIIDDAISR--------VFGLGFGVTRSKLSTS 61
           C+ KGYARLA   E +   H G S  ++++DDAIS+        V G G GVT+SK  + 
Sbjct: 35  CSHKGYARLA---EEMNTSHEGMSTDNNVVDDAISKALGPDRGYVRGYGHGVTKSKFLSM 94

Query: 62  TQEDKTIASLERKCNNLTTDVDELKSVAASLIRDKVKLS 93
           +Q D TI  L+ +C+ +T+++ ELK + +SL+ DK K S
Sbjct: 95  SQNDNTITFLQERCDRMTSEMTELKYLISSLLADKAKSS 130

[Close]

BLAST of Bhi07M000986 vs. NCBI nr
Match: XP_022154305.1 (uncharacterized protein LOC111021601 isoform X1 [Momordica charantia])

HSP 1 Score: 60.1 bits (144), Expect = 4.6e-06
Identity = 33/89 (37.08%), Postives = 54/89 (60.67%), Query Frame = 0


Query: 14  LEHIEQ--KHVGTSRSSSIIDDAISRVF--------GLGFGVTRSKLSTSTQEDKTIASL 73
           LE ++Q   H G S +++++DDAI +V         G G GVT+SK  + +Q+D TI   
Sbjct: 51  LERLDQNTSHEGMSTNTNVVDDAIGKVLGHDHGYVRGYGHGVTKSKFLSMSQKDNTITFF 110

Query: 74  ERKCNNLTTDVDELKSVAASLIRDKVKLS 93
             +C+ +T+++ ELK + +SL+ DK K S
Sbjct: 111 PEECDRMTSEMTELKYLVSSLLADKAKSS 139

The following BLAST results are available for this feature:

BLAST of Bhi07M000986 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Bhi07M000986 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Bhi07M000986 vs. TrEMBL


Match Name	E-value	Identity	Description

BLAST of Bhi07M000986 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022158575.1	2.4e-10	41.41	uncharacterized protein LOC111025029 [Momordica charantia]	[more]
XP_022154305.1	4.6e-06	37.08	uncharacterized protein LOC111021601 isoform X1 [Momordica charantia]	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Bhi07G000986	Bhi07G000986	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Bhi07M000986.exon3	Bhi07M000986.exon3	exon
Bhi07M000986.exon2	Bhi07M000986.exon2	exon
Bhi07M000986.exon1	Bhi07M000986.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.Bhi07M000986	cds.Bhi07M000986	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Bhi07M000986	Bhi07M000986-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 60..80