Bhi07M000955 (mRNA) Wax gourd

Overview
NameBhi07M000955
TypemRNA
OrganismBenincasa hispida (Wax gourd)
DescriptionTranscription termination factor like
Locationchr7 : 35796264 .. 35797288 (+)
Sequence length1025
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TGTCGAGGCGACCTTCGATCCTTCAATCGAGTCGAGAGTATCGAACAATCTGAAGCCTAAAATTGAGTTCCTCGAGGAAATTGGGACCGTCAGTTCTTTACTTCCTAAGGTAATTCTATCGAATCCTTCGATTCTGTTTAGGAGCTTAGATTCTCAGTTGAAACCATCATTTTGTTTCATAAAGGAAGTGCATGAATCGGATGAACAAGTAACTGCTGCTATTCGTCGTTCTTCGTGGCTTGAATCGGATGAACAAGGGTATTATGCAATCTAACATTGATGTTTTGATCGCCGAAGGGGCACCTTCTAGGAATATAGCGAAATTGATTGTACTGCAGCCTAGAACTATTATGCAAAAGGTTGATAGAATGGTTTATGCAGTGAAAACAATAAAAAAATTGGGCATTGAAGCAAAGGCTCGCATGTTTGTTCATGCAGTTAAGCAACGCTTTCAATGAATGATTCAACTTGGAAGAAGAAAATAAACGTTTTGAAGAGTTTGGGATGGTCTGAGAAGGAGTTTTTTACAGCATTTAAGAAAGACCCATTTTGTTTAGCTTGTTCAGAGGAGAAAATGAGGGATGTTGCAGATTTCTGTTTCAACACTGCAAAGTTGGATCCAGGAACTGTAATTTCTTGCCCTAAGTTCTTCACGTATGGACTCGACAAGCGGCTTCGGCCCAAAGTTGTTGAGGTTTTGAACATGAAAAATCTTCTTAAGAAAAACAAAAAGATTGCTTGGGTGCTTATACAAGGGGAGAGAAGTTTTGTGGAGAATTATGTTCTTAAGCATTTGGATGAAATCCCAGATCTTATGGACATATACCGGGGCAATGTCGCAGCCGAAACCAGATCTGTTCTATAGGATTTGAAGGTTGTAAGTTAAAAATCTTCTTATAGTCTAAATTTCAGCATCATGATCTTCAAATGGGAGAGCATTTTTGTTGGTATTGAGCCTACTGTTTCAAATGCTTCATGAGCTTTTCAAGATCTCTCTCTTCAAGTGGGAGAGTCCTGTTGTTTTC

mRNA sequence

TGTCGAGGCGACCTTCGATCCTTCAATCGAGTCGAGAGTATCGAACAATCTGAAGCCTAAAATTGAGTTCCTCGAGGAAATTGGGACCGTCAGTTCTTTACTTCCTAAGGTAATTCTATCGAATCCTTCGATTCTGTTTAGGAGCTTAGATTCTCAGTTGAAACCATCATTTTGTTTCATAAAGGAAGTGCATGAATCGGATGAACAAGTAACTGCTGCTATTCGTCGTTCTTCGTGGCTTGAATCGGATGAACAAGGGTATTATGCAATCTAACATTGATGTTTTGATCGCCGAAGGGGCACCTTCTAGGAATATAGCGAAATTGATTGTACTGCAGCCTAGAACTATTATGCAAAAGGTTGATAGAATGGTTTATGCAGTGAAAACAATAAAAAAATTGGGCATTGAAGCAAAGGCTCGCATGTTTGTTCATGCAGTTAAGCAACGCTTTCAATGAATGATTCAACTTGGAAGAAGAAAATAAACGTTTTGAAGAGTTTGGGATGGTCTGAGAAGGAGTTTTTTACAGCATTTAAGAAAGACCCATTTTGTTTAGCTTGTTCAGAGGAGAAAATGAGGGATGTTGCAGATTTCTGTTTCAACACTGCAAAGTTGGATCCAGGAACTGTAATTTCTTGCCCTAAGTTCTTCACGTATGGACTCGACAAGCGGCTTCGGCCCAAAGTTGTTGAGGTTTTGAACATGAAAAATCTTCTTAAGAAAAACAAAAAGATTGCTTGGGTGCTTATACAAGGGGAGAGAAGTTTTGTGGAGAATTATGTTCTTAAGCATTTGGATGAAATCCCAGATCTTATGGACATATACCGGGGCAATGTCGCAGCCGAAACCAGATCTGTTCTATAGGATTTGAAGGTTGTAAGTTAAAAATCTTCTTATAGTCTAAATTTCAGCATCATGATCTTCAAATGGGAGAGCATTTTTGTTGGTATTGAGCCTACTGTTTCAAATGCTTCATGAGCTTTTCAAGATCTCTCTCTTCAAGTGGGAGAGTCCTGTTGTTTTC

Coding sequence (CDS)

ATGAATGATTCAACTTGGAAGAAGAAAATAAACGTTTTGAAGAGTTTGGGATGGTCTGAGAAGGAGTTTTTTACAGCATTTAAGAAAGACCCATTTTGTTTAGCTTGTTCAGAGGAGAAAATGAGGGATGTTGCAGATTTCTGTTTCAACACTGCAAAGTTGGATCCAGGAACTGTAATTTCTTGCCCTAAGTTCTTCACGTATGGACTCGACAAGCGGCTTCGGCCCAAAGTTGTTGAGGTTTTGAACATGAAAAATCTTCTTAAGAAAAACAAAAAGATTGCTTGGGTGCTTATACAAGGGGAGAGAAGTTTTGTGGAGAATTATGTTCTTAAGCATTTGGATGAAATCCCAGATCTTATGGACATATACCGGGGCAATGTCGCAGCCGAAACCAGATCTGTTCTATAG

Protein sequence

MNDSTWKKKINVLKSLGWSEKEFFTAFKKDPFCLACSEEKMRDVADFCFNTAKLDPGTVISCPKFFTYGLDKRLRPKVVEVLNMKNLLKKNKKIAWVLIQGERSFVENYVLKHLDEIPDLMDIYRGNVAAETRSVL
Homology
[Close]
BLAST of Bhi07M000955 vs. TAIR10
Match: AT5G07900.1 (Mitochondrial transcription termination factor family protein)

HSP 1 Score: 89.4 bits (220), Expect = 1.9e-18
Identity = 43/127 (33.86%), Postives = 72/127 (56.69%), Query Frame = 0 

Query: 2   NDSTWKKKINVLKSLGWSEKEFFTAFKKDPFCLACSEEKMRDVADFCFNTAKLDPGTVIS 61
           N S W K   V +  GWSE +   AFKK P C+  SE K+    ++  N   + P ++  
Sbjct: 275 NKSIWDKCFEVYQRWGWSEDDIMCAFKKHPHCMMLSERKINRTMEYFVNEMNMAPRSIAQ 334

Query: 62  CPKFFTYGLDKRLRPK--VVEVLNMKNLLKKNKKIAWVLIQGERSFVENYVLKHLDEIPD 121
           CP    + L+KR+ P+  V +VL    L+K++  +  +L+  E+ F+E  V+K+ +E+P+
Sbjct: 335 CPVVLFFSLEKRIIPRCSVTKVLVSNGLVKEDWSLTSLLVPVEKVFLEKLVIKYEEELPE 394

Query: 122 LMDIYRG 127
           LM++Y G
Sbjct: 395 LMNLYLG 401

[Close]
BLAST of Bhi07M000955 vs. TAIR10
Match: AT1G61990.1 (Mitochondrial transcription termination factor family protein)

HSP 1 Score: 63.2 bits (152), Expect = 1.5e-10
Identity = 38/128 (29.69%), Postives = 67/128 (52.34%), Query Frame = 0 

Query: 8   KKINVLKSLGWSEKEFFTAFKKDPFCLACSEEKMRDVADFCFNTAKLDPGTVISCPKFFT 67
           K       LG+S  EF    K+ P C+  S E ++   +F     K     ++  P+ F 
Sbjct: 287 KSAETFLDLGYSRAEFLMMVKRYPPCIEYSVESVKKKNEFLVKKMKWPRNALVLHPQVFG 346

Query: 68  YGLDKRLRPK--VVEVLNMKNLLKKNKK---IAWVLIQGERSFVENYVLKHLDEIPDLMD 127
           Y ++KR+ P+  ++E L  K LL+K  +   ++ VL   +  F++ YV+KH + +P LM 
Sbjct: 347 YSMEKRIIPRCNILEALLSKGLLRKGSELPAVSSVLSCTDEGFLDRYVMKHNELVPTLMA 406

Query: 128 IY-RGNVA 130
           I+ +G+V+
Sbjct: 407 IFTKGSVS 414

[Close]
BLAST of Bhi07M000955 vs. TAIR10
Match: AT5G64950.1 (Mitochondrial transcription termination factor family protein)

HSP 1 Score: 62.4 bits (150), Expect = 2.5e-10
Identity = 36/125 (28.80%), Postives = 67/125 (53.60%), Query Frame = 0 

Query: 1   MNDSTWKKKINVLKSLGWSEKEFFTAFKKDPFCLACSEEKMRDVADFCFNTAKLDPGTVI 60
           +++ T+ +K+ +  + G+SE E     ++ P  + CSE+K+    +F      L+   + 
Sbjct: 245 LSEKTFDRKVKLFMANGFSEDEITDIIRRSPGLIRCSEDKLTLGFEFYLKRMGLEREALA 304

Query: 61  SCPKFFTYGLDKRLRP--KVVEVLNMKNLL----KKNKKIAWVLIQGERSFVENYVLKHL 120
             P   +Y L+KR+ P  KV+++L  K LL    KK K +  ++   E +F+E YV++  
Sbjct: 305 KRPCVLSYNLEKRVIPRLKVLQILREKGLLLKEEKKKKNMVGIVEMTEEAFLEKYVVRFG 364

[Close]
BLAST of Bhi07M000955 vs. TAIR10
Match: AT1G61970.1 (Mitochondrial transcription termination factor family protein)

HSP 1 Score: 58.5 bits (140), Expect = 3.6e-09
Identity = 38/123 (30.89%), Postives = 61/123 (49.59%), Query Frame = 0 

Query: 10  INVLKSLGWSEKEFFTAFKKDPFCLACSEEKMRDVADFCFNTAKLDPGTVISCPKFFTYG 69
           I     LG+S  EF    K  P C+  S E ++   +F           V+S P  F Y 
Sbjct: 296 IETFLGLGFSRDEFAKMVKHFPPCIGLSTETVKKKTEFLVKKMNWPLKAVVSNPAVFGYS 355

Query: 70  LDKRLRPK--VVEVLNMKNLLKKN-KKIAWVLIQGERSFVENYVLKHLDE--IPDLMDIY 128
           L+KR+ P+  V++ L  K L++     I+ VL+  ++ F+  YV  H+D+  + +LM IY
Sbjct: 356 LEKRIVPRGNVIKALMSKGLMRNELPSISCVLMCTKQVFLNRYVANHVDKQLVTELMAIY 415

[Close]
BLAST of Bhi07M000955 vs. TAIR10
Match: AT3G46950.1 (Mitochondrial transcription termination factor family protein)

HSP 1 Score: 44.3 bits (103), Expect = 7.1e-05
Identity = 27/75 (36.00%), Postives = 45/75 (60.00%), Query Frame = 0 

Query: 59  VISCPKFFTYGLDKRLRPK--VVEVLNMKNLL-KKNKKIAWVLIQGERSFVENYVLKHLD 118
           V+  P    Y L+KR+ P+  V++ L  K L+  +N  I+ VL+  ++ F++ YV+KH  
Sbjct: 376 VVMIPTVLGYSLEKRIVPRSNVIKALMSKGLIGSENPPISSVLVCTDQEFLKRYVMKHDK 435

Query: 119 EIPDLMDIY-RGNVA 130
            +P LM I+ RG V+
Sbjct: 436 LVPKLMAIFNRGRVS 450

[Close]
BLAST of Bhi07M000955 vs. TrEMBL
Match: tr|A0A1S3BEQ3|A0A1S3BEQ3_CUCME (uncharacterized protein LOC103488865 OS=Cucumis melo OX=3656 GN=LOC103488865 PE=4 SV=1)

HSP 1 Score: 210.7 bits (535), Expect = 2.1e-51
Identity = 103/138 (74.64%), Postives = 119/138 (86.23%), Query Frame = 0 

Query: 1   MNDSTWKKKINVLKSLGWSEKEFFTAFKKDPFCLACSEEKMRDVADFCFNTAKLDPGTVI 60
           ++DSTWKKKINV+KSLGWSE E FTAFKKDP  L CSEEKMRDVADFCFNTAKLDPG+VI
Sbjct: 237 VSDSTWKKKINVMKSLGWSETEIFTAFKKDPSFLGCSEEKMRDVADFCFNTAKLDPGSVI 296

Query: 61  SCPKFFTYGLDKRLRP--KVVEVLNMKNLLKKNKKIAWVLIQGERSFVENYVLKHLDEIP 120
            CPK F   +DKRL+P  KV+EVL +KNLL KN  IAWVL+Q ER+FV+ +V++HLDEIP
Sbjct: 297 ICPKIFKCSVDKRLQPRYKVLEVLKVKNLL-KNVNIAWVLVQSERAFVKKFVVRHLDEIP 356

Query: 121 DLMDIYRGNVAAETRSVL 137
           +LMDIYRGNV AET+SVL
Sbjct: 357 NLMDIYRGNVTAETKSVL 373

[Close]
BLAST of Bhi07M000955 vs. TrEMBL
Match: tr|A0A1S3CSA2|A0A1S3CSA2_CUCME (uncharacterized protein LOC103504258 OS=Cucumis melo OX=3656 GN=LOC103504258 PE=4 SV=1)

HSP 1 Score: 208.0 bits (528), Expect = 1.3e-50
Identity = 106/139 (76.26%), Postives = 118/139 (84.89%), Query Frame = 0 

Query: 1   MNDSTWKKKINVLKSLGWSEKEFFTAFKKDPFCLACSEEKMRDVADFCFNTAKLDPGTVI 60
           M+DSTWKKK+ V+KSLGWSEKE FTAFKKDP  L CSE+KMRDVADFCFNTAKLDPGTVI
Sbjct: 30  MSDSTWKKKVTVMKSLGWSEKEIFTAFKKDPNYLGCSEKKMRDVADFCFNTAKLDPGTVI 89

Query: 61  SCPKFFTYGLDKRLRP--KVVEVLNMKNLLKKNKKI--AWVLIQGERSFVENYVLKHLDE 120
           S P FF Y +DKRLRP  KV+EVL +KNLL KNKKI  AW   QGER FV+N V+KHLDE
Sbjct: 90  SYPVFFKYSVDKRLRPRYKVLEVLKVKNLL-KNKKIALAWWFTQGEREFVQNNVVKHLDE 149

Query: 121 IPDLMDIYRGNVAAETRSV 136
           IP+LMDIYRGN A+ET+SV
Sbjct: 150 IPNLMDIYRGNDASETKSV 167

[Close]
BLAST of Bhi07M000955 vs. TrEMBL
Match: tr|A0A1S3BDE1|A0A1S3BDE1_CUCME (transcription termination factor MTERF2, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC103488812 PE=4 SV=1)

HSP 1 Score: 208.0 bits (528), Expect = 1.3e-50
Identity = 105/138 (76.09%), Postives = 118/138 (85.51%), Query Frame = 0 

Query: 1   MNDSTWKKKINVLKSLGWSEKEFFTAFKKDPFCLACSEEKMRDVADFCFNTAKLDPGTVI 60
           M+DSTWKKKINV+KSLGWS+KE FTAFK+ P  L CSEEK+RDVADFCFNTAKLDPGT+I
Sbjct: 237 MSDSTWKKKINVMKSLGWSDKEIFTAFKRHPNYLGCSEEKIRDVADFCFNTAKLDPGTLI 296

Query: 61  SCPKFFTYGLDKRLRP--KVVEVLNMKNLLKKNKKIAWVLIQGERSFVENYVLKHLDEIP 120
           S PK F    DKRLRP  KV+EVL +KNLL KNKKIA VL++GER FVE YV+KHLDEIP
Sbjct: 297 SYPKLFKLSFDKRLRPRYKVLEVLKVKNLL-KNKKIASVLVEGERRFVEKYVVKHLDEIP 356

Query: 121 DLMDIYRGNVAAETRSVL 137
           +LMDIY GNV AET+SVL
Sbjct: 357 NLMDIYVGNVEAETKSVL 373

[Close]
BLAST of Bhi07M000955 vs. TrEMBL
Match: tr|A0A1S4DWY9|A0A1S4DWY9_CUCME (uncharacterized protein LOC107990789 OS=Cucumis melo OX=3656 GN=LOC107990789 PE=4 SV=1)

HSP 1 Score: 207.6 bits (527), Expect = 1.8e-50
Identity = 105/137 (76.64%), Postives = 117/137 (85.40%), Query Frame = 0 

Query: 1   MNDSTWKKKINVLKSLGWSEKEFFTAFKKDPFCLACSEEKMRDVADFCFNTAKLDPGTVI 60
           ++DS W  KINVLKSLGWSEKE F AFKKDP  L CSE+KMRDVADFCFNTAKLDPGTVI
Sbjct: 53  LSDSNWTNKINVLKSLGWSEKEIFAAFKKDPNYLGCSEKKMRDVADFCFNTAKLDPGTVI 112

Query: 61  SCPKFFTYGLDKRLRP--KVVEVLNMKNLLKKNKKIAWVLIQGERSFVENYVLKHLDEIP 120
           S P FF   +DKRLRP  KV+EVL +KNLL KNKKIA VL+QGE++FVE YV+KHLDEIP
Sbjct: 113 SYPVFFKSSVDKRLRPRYKVLEVLKVKNLL-KNKKIAGVLLQGEKTFVEKYVVKHLDEIP 172

Query: 121 DLMDIYRGNVAAETRSV 136
           +LMDIYRGNV AET+SV
Sbjct: 173 NLMDIYRGNVEAETKSV 188

[Close]
BLAST of Bhi07M000955 vs. TrEMBL
Match: tr|A0A1S3BEK7|A0A1S3BEK7_CUCME (uncharacterized protein LOC103488825 OS=Cucumis melo OX=3656 GN=LOC103488825 PE=4 SV=1)

HSP 1 Score: 204.5 bits (519), Expect = 1.5e-49
Identity = 104/139 (74.82%), Postives = 118/139 (84.89%), Query Frame = 0 

Query: 1   MNDSTWKKKINVLKSLGWSEKEFFTAFKKDPFCLACSEEKMRDVADFCFNTAKLDPGTVI 60
           M+DSTWKKKINV+KSLGWSEKE  TAFK+ P CL CSEEKMRDVADFCFNTAKLDPGT+I
Sbjct: 256 MSDSTWKKKINVMKSLGWSEKEILTAFKRYPLCLTCSEEKMRDVADFCFNTAKLDPGTLI 315

Query: 61  SCPKFFTYGLDKRLRP--KVVEVLNMKNLLKKNKKI--AWVLIQGERSFVENYVLKHLDE 120
           S P FF   ++KRLRP  KV+EVL +KNLL +NKKI  AW  +QGER FVEN V+KHLDE
Sbjct: 316 SNPVFFKLSVNKRLRPRYKVLEVLKVKNLL-RNKKIALAWWFMQGEREFVENNVVKHLDE 375

Query: 121 IPDLMDIYRGNVAAETRSV 136
           IP+LMDIYRGN A+ET+SV
Sbjct: 376 IPNLMDIYRGNDASETQSV 393

[Close]
BLAST of Bhi07M000955 vs. NCBI nr
Match: XP_022957148.1 (transcription termination factor MTERF5, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 218.4 bits (555), Expect = 1.5e-53
Identity = 109/138 (78.99%), Postives = 119/138 (86.23%), Query Frame = 0 

Query: 1   MNDSTWKKKINVLKSLGWSEKEFFTAFKKDPFCLACSEEKMRDVADFCFNTAKLDPGTVI 60
           MND+TWKKKINVLKSLGWSEKE  TAFKKDP+CLACSEEKMR VADFC NTAKLDP TVI
Sbjct: 237 MNDTTWKKKINVLKSLGWSEKEILTAFKKDPYCLACSEEKMRAVADFCLNTAKLDPETVI 296

Query: 61  SCPKFFTYGLDKRLRP--KVVEVLNMKNLLKKNKKIAWVLIQGERSFVENYVLKHLDEIP 120
           S PKFF YGLDK LRP  KVVEVL +K L+ KN KIAW+L+  ER FV+NYVLKHLDE+P
Sbjct: 297 SNPKFFMYGLDKWLRPRFKVVEVLKVKKLI-KNTKIAWLLLLDERIFVKNYVLKHLDEVP 356

Query: 121 DLMDIYRGNVAAETRSVL 137
           DLMDI+RGN AAE+R VL
Sbjct: 357 DLMDIFRGNAAAESRPVL 373

[Close]
BLAST of Bhi07M000955 vs. NCBI nr
Match: XP_022983900.1 (transcription termination factor MTERF9, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 216.1 bits (549), Expect = 7.5e-53
Identity = 107/138 (77.54%), Postives = 117/138 (84.78%), Query Frame = 0 

Query: 1   MNDSTWKKKINVLKSLGWSEKEFFTAFKKDPFCLACSEEKMRDVADFCFNTAKLDPGTVI 60
           MND+TWKKKINVLKSLGWSEKE  TAFK+DP CLACSEEKMR  ADFC NTAKLDP TVI
Sbjct: 237 MNDTTWKKKINVLKSLGWSEKEILTAFKRDPLCLACSEEKMRAAADFCLNTAKLDPETVI 296

Query: 61  SCPKFFTYGLDKRLRP--KVVEVLNMKNLLKKNKKIAWVLIQGERSFVENYVLKHLDEIP 120
           S PKFF YGLDK LRP  KV+EVL +K L+ KN+KIAW+L  GER FV NYVLK+LDE+P
Sbjct: 297 SYPKFFMYGLDKWLRPRFKVLEVLKVKKLI-KNRKIAWLLFLGEREFVTNYVLKYLDEVP 356

Query: 121 DLMDIYRGNVAAETRSVL 137
           DLMDIYRGN AAE+R VL
Sbjct: 357 DLMDIYRGNAAAESRPVL 373

[Close]
BLAST of Bhi07M000955 vs. NCBI nr
Match: XP_022957147.1 (transcription termination factor MTERF5, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 214.5 bits (545), Expect = 2.2e-52
Identity = 107/138 (77.54%), Postives = 118/138 (85.51%), Query Frame = 0 

Query: 1   MNDSTWKKKINVLKSLGWSEKEFFTAFKKDPFCLACSEEKMRDVADFCFNTAKLDPGTVI 60
           ++D+TWKKKINVLKSLGWSEKE  TAFK+DP+CLACSEEKMR VADFC NTAKLDP TVI
Sbjct: 237 ISDTTWKKKINVLKSLGWSEKEILTAFKRDPYCLACSEEKMRAVADFCLNTAKLDPETVI 296

Query: 61  SCPKFFTYGLDKRLRP--KVVEVLNMKNLLKKNKKIAWVLIQGERSFVENYVLKHLDEIP 120
           S PKFF  GLDK LRP  KVVEVL +K L+ KN KIAW+L  GER+FV NYVLKHLDE+P
Sbjct: 297 SYPKFFMSGLDKCLRPRFKVVEVLKVKKLI-KNTKIAWLLFLGERNFVTNYVLKHLDEVP 356

Query: 121 DLMDIYRGNVAAETRSVL 137
           DLMDIYRGN AAE+R VL
Sbjct: 357 DLMDIYRGNAAAESRPVL 373

[Close]
BLAST of Bhi07M000955 vs. NCBI nr
Match: XP_022983916.1 (transcription termination factor MTERF9, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 214.5 bits (545), Expect = 2.2e-52
Identity = 106/138 (76.81%), Postives = 119/138 (86.23%), Query Frame = 0 

Query: 1   MNDSTWKKKINVLKSLGWSEKEFFTAFKKDPFCLACSEEKMRDVADFCFNTAKLDPGTVI 60
           ++D+TWKKKINVLKSLGWSEKE  TAFK+DP+CLACSEEKMR VADFC NTAKLDP TVI
Sbjct: 237 ISDTTWKKKINVLKSLGWSEKEILTAFKRDPYCLACSEEKMRAVADFCLNTAKLDPETVI 296

Query: 61  SCPKFFTYGLDKRLRP--KVVEVLNMKNLLKKNKKIAWVLIQGERSFVENYVLKHLDEIP 120
           S PKFF  GLDK LRP  KV+EVL +K L+ KN+KIAW+L  GER+FV NYVLKHLDE+P
Sbjct: 297 SYPKFFMSGLDKCLRPRFKVLEVLKVKKLI-KNRKIAWLLFLGERNFVTNYVLKHLDEVP 356

Query: 121 DLMDIYRGNVAAETRSVL 137
           DLMDIYRGN AAE+R VL
Sbjct: 357 DLMDIYRGNAAAESRPVL 373

[Close]
BLAST of Bhi07M000955 vs. NCBI nr
Match: XP_023529167.1 (transcription termination factor MTERF5, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 212.6 bits (540), Expect = 8.3e-52
Identity = 106/138 (76.81%), Postives = 118/138 (85.51%), Query Frame = 0 

Query: 1   MNDSTWKKKINVLKSLGWSEKEFFTAFKKDPFCLACSEEKMRDVADFCFNTAKLDPGTVI 60
           MND+TWKKKINV KSLGWSEKE  TAFK+DP+CLACSEEKMR VADFCFN AKLDP TVI
Sbjct: 237 MNDTTWKKKINVFKSLGWSEKEILTAFKRDPYCLACSEEKMRAVADFCFNAAKLDPETVI 296

Query: 61  SCPKFFTYGLDKRLRP--KVVEVLNMKNLLKKNKKIAWVLIQGERSFVENYVLKHLDEIP 120
           S P FF  GLDKRLRP  KVVEVL +K L+ +N+KIA +L+ GER FV+NYVLKHLDE+P
Sbjct: 297 SYPTFFMSGLDKRLRPRFKVVEVLKVKKLI-ENRKIARLLVLGERIFVKNYVLKHLDEVP 356

Query: 121 DLMDIYRGNVAAETRSVL 137
           DLMDIYRGN AAE+R VL
Sbjct: 357 DLMDIYRGNAAAESRPVL 373

The following BLAST results are available for this feature:
BLAST of Bhi07M000955 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Bhi07M000955 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G07900.11.9e-1833.86Mitochondrial transcription termination factor family protein[more]
AT1G61990.11.5e-1029.69Mitochondrial transcription termination factor family protein[more]
AT5G64950.12.5e-1028.80Mitochondrial transcription termination factor family protein[more]
AT1G61970.13.6e-0930.89Mitochondrial transcription termination factor family protein[more]
AT3G46950.17.1e-0536.00Mitochondrial transcription termination factor family protein[more]
BLAST of Bhi07M000955 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3BEQ3|A0A1S3BEQ3_CUCME2.1e-5174.64uncharacterized protein LOC103488865 OS=Cucumis melo OX=3656 GN=LOC103488865 PE=... [more]
tr|A0A1S3CSA2|A0A1S3CSA2_CUCME1.3e-5076.26uncharacterized protein LOC103504258 OS=Cucumis melo OX=3656 GN=LOC103504258 PE=... [more]
tr|A0A1S3BDE1|A0A1S3BDE1_CUCME1.3e-5076.09transcription termination factor MTERF2, chloroplastic-like OS=Cucumis melo OX=3... [more]
tr|A0A1S4DWY9|A0A1S4DWY9_CUCME1.8e-5076.64uncharacterized protein LOC107990789 OS=Cucumis melo OX=3656 GN=LOC107990789 PE=... [more]
tr|A0A1S3BEK7|A0A1S3BEK7_CUCME1.5e-4974.82uncharacterized protein LOC103488825 OS=Cucumis melo OX=3656 GN=LOC103488825 PE=... [more]
BLAST of Bhi07M000955 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022957148.11.5e-5378.99transcription termination factor MTERF5, chloroplastic-like [Cucurbita moschata][more]
XP_022983900.17.5e-5377.54transcription termination factor MTERF9, chloroplastic-like [Cucurbita maxima][more]
XP_022957147.12.2e-5277.54transcription termination factor MTERF5, chloroplastic-like [Cucurbita moschata][more]
XP_022983916.12.2e-5276.81transcription termination factor MTERF9, chloroplastic-like [Cucurbita maxima][more]
XP_023529167.18.3e-5276.81transcription termination factor MTERF5, chloroplastic-like [Cucurbita pepo subs... [more]
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
TermDefinition
GO:0003690double-stranded DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
Vocabulary: INTERPRO
TermDefinition
IPR038538MTERF_sf
IPR003690MTERF
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
molecular_function GO:0003690 double-stranded DNA binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Bhi07G000955Bhi07G000955gene


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Bhi07M000955.utr5p1Bhi07M000955.utr5p1five_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Bhi07M000955.exon1Bhi07M000955.exon1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
cds.Bhi07M000955cds.Bhi07M000955CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Bhi07M000955.utr3p1Bhi07M000955.utr3p1three_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Bhi07M000955Bhi07M000955-proteinpolypeptide


InterPro
Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003690Transcription termination factor, mitochondrial/chloroplasticPFAMPF02536mTERFcoord: 3..105
e-value: 2.0E-15
score: 56.5
IPR038538MTERF superfamily, mitochondrial/chloroplasticGENE3DG3DSA:1.25.70.10coord: 1..117
e-value: 2.4E-11
score: 45.3
NoneNo IPR availablePANTHERPTHR13068CGI-12 PROTEIN-RELATEDcoord: 1..129
NoneNo IPR availablePANTHERPTHR13068:SF20SUBFAMILY NOT NAMEDcoord: 1..129