Bhi06M001528 (mRNA) Wax gourd

Overview
NameBhi06M001528
TypemRNA
OrganismBenincasa hispida (Wax gourd)
DescriptionGag/pol polyprotein-maize retrotransposon Hopscotch
Locationchr6 : 50126649 .. 50126885 (-)
Sequence length237
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGAATACACCTGCTGTCAACTTCTTCTCTCCTGTTTTTCCTAGAGTTGCCAACAATGATAACATCACAGGACTTCCCTTAAATCAGCTACTTAATCAAGTGACATCCATCAAGATGGATTGGTCAAATTTCTTACTTTGGCAAAATCTCGCTTGGCCGATTCTTAGGAGCTATCGATTGGAAGGCTACCTAATTGGGGAAAATCCCTGCCCAAATCGCTTCGTTCCAATGTAA

mRNA sequence

ATGGTGAATACACCTGCTGTCAACTTCTTCTCTCCTGTTTTTCCTAGAGTTGCCAACAATGATAACATCACAGGACTTCCCTTAAATCAGCTACTTAATCAAGTGACATCCATCAAGATGGATTGGTCAAATTTCTTACTTTGGCAAAATCTCGCTTGGCCGATTCTTAGGAGCTATCGATTGGAAGGCTACCTAATTGGGGAAAATCCCTGCCCAAATCGCTTCGTTCCAATGTAA

Coding sequence (CDS)

ATGGTGAATACACCTGCTGTCAACTTCTTCTCTCCTGTTTTTCCTAGAGTTGCCAACAATGATAACATCACAGGACTTCCCTTAAATCAGCTACTTAATCAAGTGACATCCATCAAGATGGATTGGTCAAATTTCTTACTTTGGCAAAATCTCGCTTGGCCGATTCTTAGGAGCTATCGATTGGAAGGCTACCTAATTGGGGAAAATCCCTGCCCAAATCGCTTCGTTCCAATGTAA

Protein sequence

MVNTPAVNFFSPVFPRVANNDNITGLPLNQLLNQVTSIKMDWSNFLLWQNLAWPILRSYRLEGYLIGENPCPNRFVPM
Homology
[Close]
BLAST of Bhi06M001528 vs. TrEMBL
Match: tr|A0A1S4DZ26|A0A1S4DZ26_CUCME (uncharacterized protein LOC107991202 OS=Cucumis melo OX=3656 GN=LOC107991202 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 6.4e-13
Identity = 33/59 (55.93%), Postives = 47/59 (79.66%), Query Frame = 0 

Query: 18 ANNDNITGLPLNQLLNQVTSIKMDWSNFLLWQNLAWPILRSYRLEGYLIGENPCPNRFV 77
          ++  N +  PLNQLLNQ++S+K+D  N+LLW+ LA PI++SY+ EGYL GENPCP +F+
Sbjct: 10 SSTTNFSNPPLNQLLNQLSSVKLDRENYLLWKTLALPIMKSYKFEGYLTGENPCPPKFI 68

[Close]
BLAST of Bhi06M001528 vs. TrEMBL
Match: tr|A0A1S4E1U9|A0A1S4E1U9_CUCME (uncharacterized protein LOC107991581 isoform X4 OS=Cucumis melo OX=3656 GN=LOC107991581 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 7.8e-11
Identity = 30/50 (60.00%), Postives = 41/50 (82.00%), Query Frame = 0 

Query: 27 PLNQLLNQVTSIKMDWSNFLLWQNLAWPILRSYRLEGYLIGENPCPNRFV 77
          PLNQ+LNQ+T++K+D  N+LLW+ LA PIL+ Y+LEG+L  E PCP+ FV
Sbjct: 22 PLNQILNQLTTVKLDRKNYLLWKTLALPILKDYKLEGHLTAETPCPSHFV 71

[Close]
BLAST of Bhi06M001528 vs. TrEMBL
Match: tr|A0A1S4E1V2|A0A1S4E1V2_CUCME (uncharacterized protein LOC107991581 isoform X3 OS=Cucumis melo OX=3656 GN=LOC107991581 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 7.8e-11
Identity = 30/50 (60.00%), Postives = 41/50 (82.00%), Query Frame = 0 

Query: 27 PLNQLLNQVTSIKMDWSNFLLWQNLAWPILRSYRLEGYLIGENPCPNRFV 77
          PLNQ+LNQ+T++K+D  N+LLW+ LA PIL+ Y+LEG+L  E PCP+ FV
Sbjct: 22 PLNQILNQLTTVKLDRKNYLLWKTLALPILKDYKLEGHLTAETPCPSHFV 71

[Close]
BLAST of Bhi06M001528 vs. TrEMBL
Match: tr|A0A1S4E1U6|A0A1S4E1U6_CUCME (uncharacterized protein LOC107991581 isoform X1 OS=Cucumis melo OX=3656 GN=LOC107991581 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 7.8e-11
Identity = 30/50 (60.00%), Postives = 41/50 (82.00%), Query Frame = 0 

Query: 27 PLNQLLNQVTSIKMDWSNFLLWQNLAWPILRSYRLEGYLIGENPCPNRFV 77
          PLNQ+LNQ+T++K+D  N+LLW+ LA PIL+ Y+LEG+L  E PCP+ FV
Sbjct: 22 PLNQILNQLTTVKLDRKNYLLWKTLALPILKDYKLEGHLTAETPCPSHFV 71

[Close]
BLAST of Bhi06M001528 vs. TrEMBL
Match: tr|A0A1S4E2K3|A0A1S4E2K3_CUCME (uncharacterized protein LOC107991581 isoform X5 OS=Cucumis melo OX=3656 GN=LOC107991581 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 7.8e-11
Identity = 30/50 (60.00%), Postives = 41/50 (82.00%), Query Frame = 0 

Query: 27 PLNQLLNQVTSIKMDWSNFLLWQNLAWPILRSYRLEGYLIGENPCPNRFV 77
          PLNQ+LNQ+T++K+D  N+LLW+ LA PIL+ Y+LEG+L  E PCP+ FV
Sbjct: 22 PLNQILNQLTTVKLDRKNYLLWKTLALPILKDYKLEGHLTAETPCPSHFV 71

[Close]
BLAST of Bhi06M001528 vs. NCBI nr
Match: XP_022151683.1 (uncharacterized protein LOC111019598 [Momordica charantia])

HSP 1 Score: 82.4 bits (202), Expect = 7.4e-13
Identity = 39/58 (67.24%), Postives = 43/58 (74.14%), Query Frame = 0 

Query: 15 PRVANNDNITGLPLNQLLNQVTSIKMDWSNFLLWQNLAWPILRSYRLEGYLIGENPCP 73
          P V +    T  PLNQLLNQ+TSIKMD  NFLLWQNLA PILRSY+L  YL G+ PCP
Sbjct: 14 PAVVSGAVFTSPPLNQLLNQITSIKMDRGNFLLWQNLALPILRSYKLFDYLTGDKPCP 71

[Close]
BLAST of Bhi06M001528 vs. NCBI nr
Match: XP_016901223.1 (PREDICTED: uncharacterized protein LOC107991202 [Cucumis melo])

HSP 1 Score: 82.0 bits (201), Expect = 9.7e-13
Identity = 33/59 (55.93%), Postives = 47/59 (79.66%), Query Frame = 0 

Query: 18 ANNDNITGLPLNQLLNQVTSIKMDWSNFLLWQNLAWPILRSYRLEGYLIGENPCPNRFV 77
          ++  N +  PLNQLLNQ++S+K+D  N+LLW+ LA PI++SY+ EGYL GENPCP +F+
Sbjct: 10 SSTTNFSNPPLNQLLNQLSSVKLDRENYLLWKTLALPIMKSYKFEGYLTGENPCPPKFI 68

[Close]
BLAST of Bhi06M001528 vs. NCBI nr
Match: XP_016902197.1 (PREDICTED: uncharacterized protein LOC107991581 isoform X1 [Cucumis melo])

HSP 1 Score: 75.1 bits (183), Expect = 1.2e-10
Identity = 30/50 (60.00%), Postives = 41/50 (82.00%), Query Frame = 0 

Query: 27 PLNQLLNQVTSIKMDWSNFLLWQNLAWPILRSYRLEGYLIGENPCPNRFV 77
          PLNQ+LNQ+T++K+D  N+LLW+ LA PIL+ Y+LEG+L  E PCP+ FV
Sbjct: 22 PLNQILNQLTTVKLDRKNYLLWKTLALPILKDYKLEGHLTAETPCPSHFV 71

[Close]
BLAST of Bhi06M001528 vs. NCBI nr
Match: XP_016902203.1 (PREDICTED: uncharacterized protein LOC107991581 isoform X3 [Cucumis melo])

HSP 1 Score: 75.1 bits (183), Expect = 1.2e-10
Identity = 30/50 (60.00%), Postives = 41/50 (82.00%), Query Frame = 0 

Query: 27 PLNQLLNQVTSIKMDWSNFLLWQNLAWPILRSYRLEGYLIGENPCPNRFV 77
          PLNQ+LNQ+T++K+D  N+LLW+ LA PIL+ Y+LEG+L  E PCP+ FV
Sbjct: 22 PLNQILNQLTTVKLDRKNYLLWKTLALPILKDYKLEGHLTAETPCPSHFV 71

[Close]
BLAST of Bhi06M001528 vs. NCBI nr
Match: XP_016902204.1 (PREDICTED: uncharacterized protein LOC107991581 isoform X4 [Cucumis melo])

HSP 1 Score: 75.1 bits (183), Expect = 1.2e-10
Identity = 30/50 (60.00%), Postives = 41/50 (82.00%), Query Frame = 0 

Query: 27 PLNQLLNQVTSIKMDWSNFLLWQNLAWPILRSYRLEGYLIGENPCPNRFV 77
          PLNQ+LNQ+T++K+D  N+LLW+ LA PIL+ Y+LEG+L  E PCP+ FV
Sbjct: 22 PLNQILNQLTTVKLDRKNYLLWKTLALPILKDYKLEGHLTAETPCPSHFV 71

The following BLAST results are available for this feature:
BLAST of Bhi06M001528 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Bhi06M001528 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Bhi06M001528 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S4DZ26|A0A1S4DZ26_CUCME6.4e-1355.93uncharacterized protein LOC107991202 OS=Cucumis melo OX=3656 GN=LOC107991202 PE=... [more]
tr|A0A1S4E1U9|A0A1S4E1U9_CUCME7.8e-1160.00uncharacterized protein LOC107991581 isoform X4 OS=Cucumis melo OX=3656 GN=LOC10... [more]
tr|A0A1S4E1V2|A0A1S4E1V2_CUCME7.8e-1160.00uncharacterized protein LOC107991581 isoform X3 OS=Cucumis melo OX=3656 GN=LOC10... [more]
tr|A0A1S4E1U6|A0A1S4E1U6_CUCME7.8e-1160.00uncharacterized protein LOC107991581 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10... [more]
tr|A0A1S4E2K3|A0A1S4E2K3_CUCME7.8e-1160.00uncharacterized protein LOC107991581 isoform X5 OS=Cucumis melo OX=3656 GN=LOC10... [more]
BLAST of Bhi06M001528 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022151683.17.4e-1367.24uncharacterized protein LOC111019598 [Momordica charantia][more]
XP_016901223.19.7e-1355.93PREDICTED: uncharacterized protein LOC107991202 [Cucumis melo][more]
XP_016902197.11.2e-1060.00PREDICTED: uncharacterized protein LOC107991581 isoform X1 [Cucumis melo][more]
XP_016902203.11.2e-1060.00PREDICTED: uncharacterized protein LOC107991581 isoform X3 [Cucumis melo][more]
XP_016902204.11.2e-1060.00PREDICTED: uncharacterized protein LOC107991581 isoform X4 [Cucumis melo][more]
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Bhi06G001528Bhi06G001528gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
cds.Bhi06M001528cds.Bhi06M001528CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Bhi06M001528.exon1Bhi06M001528.exon1exon


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Bhi06M001528Bhi06M001528-proteinpolypeptide