Bhi06G001528 (gene) Wax gourd

Overview
NameBhi06G001528
Typegene
OrganismBenincasa hispida (Wax gourd)
DescriptionGag/pol polyprotein-maize retrotransposon Hopscotch
Locationchr6 : 50126649 .. 50126885 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGAATACACCTGCTGTCAACTTCTTCTCTCCTGTTTTTCCTAGAGTTGCCAACAATGATAACATCACAGGACTTCCCTTAAATCAGCTACTTAATCAAGTGACATCCATCAAGATGGATTGGTCAAATTTCTTACTTTGGCAAAATCTCGCTTGGCCGATTCTTAGGAGCTATCGATTGGAAGGCTACCTAATTGGGGAAAATCCCTGCCCAAATCGCTTCGTTCCAATGTAA

mRNA sequence

ATGGTGAATACACCTGCTGTCAACTTCTTCTCTCCTGTTTTTCCTAGAGTTGCCAACAATGATAACATCACAGGACTTCCCTTAAATCAGCTACTTAATCAAGTGACATCCATCAAGATGGATTGGTCAAATTTCTTACTTTGGCAAAATCTCGCTTGGCCGATTCTTAGGAGCTATCGATTGGAAGGCTACCTAATTGGGGAAAATCCCTGCCCAAATCGCTTCGTTCCAATGTAA

Coding sequence (CDS)

ATGGTGAATACACCTGCTGTCAACTTCTTCTCTCCTGTTTTTCCTAGAGTTGCCAACAATGATAACATCACAGGACTTCCCTTAAATCAGCTACTTAATCAAGTGACATCCATCAAGATGGATTGGTCAAATTTCTTACTTTGGCAAAATCTCGCTTGGCCGATTCTTAGGAGCTATCGATTGGAAGGCTACCTAATTGGGGAAAATCCCTGCCCAAATCGCTTCGTTCCAATGTAA

Protein sequence

MVNTPAVNFFSPVFPRVANNDNITGLPLNQLLNQVTSIKMDWSNFLLWQNLAWPILRSYRLEGYLIGENPCPNRFVPM
Homology
[Close]
BLAST of Bhi06G001528 vs. TrEMBL
Match: tr|A0A1S4DZ26|A0A1S4DZ26_CUCME (uncharacterized protein LOC107991202 OS=Cucumis melo OX=3656 GN=LOC107991202 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 6.4e-13
Identity = 33/59 (55.93%), Postives = 47/59 (79.66%), Query Frame = 0 

Query: 18 ANNDNITGLPLNQLLNQVTSIKMDWSNFLLWQNLAWPILRSYRLEGYLIGENPCPNRFV 77
          ++  N +  PLNQLLNQ++S+K+D  N+LLW+ LA PI++SY+ EGYL GENPCP +F+
Sbjct: 10 SSTTNFSNPPLNQLLNQLSSVKLDRENYLLWKTLALPIMKSYKFEGYLTGENPCPPKFI 68

[Close]
BLAST of Bhi06G001528 vs. TrEMBL
Match: tr|A0A1S4E1U9|A0A1S4E1U9_CUCME (uncharacterized protein LOC107991581 isoform X4 OS=Cucumis melo OX=3656 GN=LOC107991581 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 7.8e-11
Identity = 30/50 (60.00%), Postives = 41/50 (82.00%), Query Frame = 0 

Query: 27 PLNQLLNQVTSIKMDWSNFLLWQNLAWPILRSYRLEGYLIGENPCPNRFV 77
          PLNQ+LNQ+T++K+D  N+LLW+ LA PIL+ Y+LEG+L  E PCP+ FV
Sbjct: 22 PLNQILNQLTTVKLDRKNYLLWKTLALPILKDYKLEGHLTAETPCPSHFV 71

[Close]
BLAST of Bhi06G001528 vs. TrEMBL
Match: tr|A0A1S4E1V2|A0A1S4E1V2_CUCME (uncharacterized protein LOC107991581 isoform X3 OS=Cucumis melo OX=3656 GN=LOC107991581 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 7.8e-11
Identity = 30/50 (60.00%), Postives = 41/50 (82.00%), Query Frame = 0 

Query: 27 PLNQLLNQVTSIKMDWSNFLLWQNLAWPILRSYRLEGYLIGENPCPNRFV 77
          PLNQ+LNQ+T++K+D  N+LLW+ LA PIL+ Y+LEG+L  E PCP+ FV
Sbjct: 22 PLNQILNQLTTVKLDRKNYLLWKTLALPILKDYKLEGHLTAETPCPSHFV 71

[Close]
BLAST of Bhi06G001528 vs. TrEMBL
Match: tr|A0A1S4E1U6|A0A1S4E1U6_CUCME (uncharacterized protein LOC107991581 isoform X1 OS=Cucumis melo OX=3656 GN=LOC107991581 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 7.8e-11
Identity = 30/50 (60.00%), Postives = 41/50 (82.00%), Query Frame = 0 

Query: 27 PLNQLLNQVTSIKMDWSNFLLWQNLAWPILRSYRLEGYLIGENPCPNRFV 77
          PLNQ+LNQ+T++K+D  N+LLW+ LA PIL+ Y+LEG+L  E PCP+ FV
Sbjct: 22 PLNQILNQLTTVKLDRKNYLLWKTLALPILKDYKLEGHLTAETPCPSHFV 71

[Close]
BLAST of Bhi06G001528 vs. TrEMBL
Match: tr|A0A1S4E2K3|A0A1S4E2K3_CUCME (uncharacterized protein LOC107991581 isoform X5 OS=Cucumis melo OX=3656 GN=LOC107991581 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 7.8e-11
Identity = 30/50 (60.00%), Postives = 41/50 (82.00%), Query Frame = 0 

Query: 27 PLNQLLNQVTSIKMDWSNFLLWQNLAWPILRSYRLEGYLIGENPCPNRFV 77
          PLNQ+LNQ+T++K+D  N+LLW+ LA PIL+ Y+LEG+L  E PCP+ FV
Sbjct: 22 PLNQILNQLTTVKLDRKNYLLWKTLALPILKDYKLEGHLTAETPCPSHFV 71

[Close]
BLAST of Bhi06G001528 vs. NCBI nr
Match: XP_022151683.1 (uncharacterized protein LOC111019598 [Momordica charantia])

HSP 1 Score: 82.4 bits (202), Expect = 7.4e-13
Identity = 39/58 (67.24%), Postives = 43/58 (74.14%), Query Frame = 0 

Query: 15 PRVANNDNITGLPLNQLLNQVTSIKMDWSNFLLWQNLAWPILRSYRLEGYLIGENPCP 73
          P V +    T  PLNQLLNQ+TSIKMD  NFLLWQNLA PILRSY+L  YL G+ PCP
Sbjct: 14 PAVVSGAVFTSPPLNQLLNQITSIKMDRGNFLLWQNLALPILRSYKLFDYLTGDKPCP 71

[Close]
BLAST of Bhi06G001528 vs. NCBI nr
Match: XP_016901223.1 (PREDICTED: uncharacterized protein LOC107991202 [Cucumis melo])

HSP 1 Score: 82.0 bits (201), Expect = 9.7e-13
Identity = 33/59 (55.93%), Postives = 47/59 (79.66%), Query Frame = 0 

Query: 18 ANNDNITGLPLNQLLNQVTSIKMDWSNFLLWQNLAWPILRSYRLEGYLIGENPCPNRFV 77
          ++  N +  PLNQLLNQ++S+K+D  N+LLW+ LA PI++SY+ EGYL GENPCP +F+
Sbjct: 10 SSTTNFSNPPLNQLLNQLSSVKLDRENYLLWKTLALPIMKSYKFEGYLTGENPCPPKFI 68

[Close]
BLAST of Bhi06G001528 vs. NCBI nr
Match: XP_016902197.1 (PREDICTED: uncharacterized protein LOC107991581 isoform X1 [Cucumis melo])

HSP 1 Score: 75.1 bits (183), Expect = 1.2e-10
Identity = 30/50 (60.00%), Postives = 41/50 (82.00%), Query Frame = 0 

Query: 27 PLNQLLNQVTSIKMDWSNFLLWQNLAWPILRSYRLEGYLIGENPCPNRFV 77
          PLNQ+LNQ+T++K+D  N+LLW+ LA PIL+ Y+LEG+L  E PCP+ FV
Sbjct: 22 PLNQILNQLTTVKLDRKNYLLWKTLALPILKDYKLEGHLTAETPCPSHFV 71

[Close]
BLAST of Bhi06G001528 vs. NCBI nr
Match: XP_016902203.1 (PREDICTED: uncharacterized protein LOC107991581 isoform X3 [Cucumis melo])

HSP 1 Score: 75.1 bits (183), Expect = 1.2e-10
Identity = 30/50 (60.00%), Postives = 41/50 (82.00%), Query Frame = 0 

Query: 27 PLNQLLNQVTSIKMDWSNFLLWQNLAWPILRSYRLEGYLIGENPCPNRFV 77
          PLNQ+LNQ+T++K+D  N+LLW+ LA PIL+ Y+LEG+L  E PCP+ FV
Sbjct: 22 PLNQILNQLTTVKLDRKNYLLWKTLALPILKDYKLEGHLTAETPCPSHFV 71

[Close]
BLAST of Bhi06G001528 vs. NCBI nr
Match: XP_016902204.1 (PREDICTED: uncharacterized protein LOC107991581 isoform X4 [Cucumis melo])

HSP 1 Score: 75.1 bits (183), Expect = 1.2e-10
Identity = 30/50 (60.00%), Postives = 41/50 (82.00%), Query Frame = 0 

Query: 27 PLNQLLNQVTSIKMDWSNFLLWQNLAWPILRSYRLEGYLIGENPCPNRFV 77
          PLNQ+LNQ+T++K+D  N+LLW+ LA PIL+ Y+LEG+L  E PCP+ FV
Sbjct: 22 PLNQILNQLTTVKLDRKNYLLWKTLALPILKDYKLEGHLTAETPCPSHFV 71

The following BLAST results are available for this feature:
BLAST of Bhi06G001528 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Bhi06G001528 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Bhi06G001528 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S4DZ26|A0A1S4DZ26_CUCME6.4e-1355.93uncharacterized protein LOC107991202 OS=Cucumis melo OX=3656 GN=LOC107991202 PE=... [more]
tr|A0A1S4E1U9|A0A1S4E1U9_CUCME7.8e-1160.00uncharacterized protein LOC107991581 isoform X4 OS=Cucumis melo OX=3656 GN=LOC10... [more]
tr|A0A1S4E1V2|A0A1S4E1V2_CUCME7.8e-1160.00uncharacterized protein LOC107991581 isoform X3 OS=Cucumis melo OX=3656 GN=LOC10... [more]
tr|A0A1S4E1U6|A0A1S4E1U6_CUCME7.8e-1160.00uncharacterized protein LOC107991581 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10... [more]
tr|A0A1S4E2K3|A0A1S4E2K3_CUCME7.8e-1160.00uncharacterized protein LOC107991581 isoform X5 OS=Cucumis melo OX=3656 GN=LOC10... [more]
BLAST of Bhi06G001528 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022151683.17.4e-1367.24uncharacterized protein LOC111019598 [Momordica charantia][more]
XP_016901223.19.7e-1355.93PREDICTED: uncharacterized protein LOC107991202 [Cucumis melo][more]
XP_016902197.11.2e-1060.00PREDICTED: uncharacterized protein LOC107991581 isoform X1 [Cucumis melo][more]
XP_016902203.11.2e-1060.00PREDICTED: uncharacterized protein LOC107991581 isoform X3 [Cucumis melo][more]
XP_016902204.11.2e-1060.00PREDICTED: uncharacterized protein LOC107991581 isoform X4 [Cucumis melo][more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Bhi06M001528Bhi06M001528mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Bhi06G001528Cucumber (Gy14) v1cgywgoB250
Bhi06G001528Cucumber (Gy14) v1cgywgoB251
Bhi06G001528Cucumber (Gy14) v2cgybwgoB130
Bhi06G001528Cucumber (Gy14) v2cgybwgoB133
Bhi06G001528Cucurbita maxima (Rimu)cmawgoB0106
Bhi06G001528Cucurbita maxima (Rimu)cmawgoB0177
Bhi06G001528Cucurbita maxima (Rimu)cmawgoB0917
Bhi06G001528Cucurbita moschata (Rifu)cmowgoB0100
Bhi06G001528Cucurbita moschata (Rifu)cmowgoB0171
Bhi06G001528Cucurbita moschata (Rifu)cmowgoB0468
Bhi06G001528Cucurbita moschata (Rifu)cmowgoB0919
Bhi06G001528Cucurbita moschata (Rifu)cmowgoB1101
Bhi06G001528Cucurbita pepo (Zucchini)cpewgoB0007
Bhi06G001528Cucurbita pepo (Zucchini)cpewgoB0010
Bhi06G001528Cucurbita pepo (Zucchini)cpewgoB0114
Bhi06G001528Cucurbita pepo (Zucchini)cpewgoB1006
Bhi06G001528Wild cucumber (PI 183967)cpiwgoB135
Bhi06G001528Wild cucumber (PI 183967)cpiwgoB137
Bhi06G001528Cucumber (Chinese Long) v3cucwgoB142
Bhi06G001528Cucumber (Chinese Long) v3cucwgoB144
Bhi06G001528Cucumber (Chinese Long) v2cuwgoB134
Bhi06G001528Cucumber (Chinese Long) v2cuwgoB137
Bhi06G001528Bottle gourd (USVL1VR-Ls)lsiwgoB106
Bhi06G001528Bottle gourd (USVL1VR-Ls)lsiwgoB108
Bhi06G001528Melon (DHL92) v3.6.1medwgoB457
Bhi06G001528Melon (DHL92) v3.5.1mewgoB454
Bhi06G001528Melon (DHL92) v3.5.1mewgoB466
Bhi06G001528Watermelon (Charleston Gray)wcgwgoB021
Bhi06G001528Watermelon (Charleston Gray)wcgwgoB260
Bhi06G001528Watermelon (Charleston Gray)wcgwgoB263
Bhi06G001528Watermelon (97103) v2wgowmbB128
Bhi06G001528Watermelon (97103) v2wgowmbB132
Bhi06G001528Watermelon (97103) v2wgowmbB156
Bhi06G001528Watermelon (97103) v1wgowmB119
Bhi06G001528Watermelon (97103) v1wgowmB133
Bhi06G001528Watermelon (97103) v1wgowmB136
Bhi06G001528Silver-seed gourdcarwgoB0841
Bhi06G001528Silver-seed gourdcarwgoB1056
Bhi06G001528Silver-seed gourdcarwgoB1260