Bhi06M000979 (mRNA) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi06M000979
Type	mRNA
Organism	Benincasa hispida (Wax gourd)
Description	ATP-dependent RNA helicase
Location	chr6 : 31172098 .. 31172382 (-)
Sequence length	285

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGCCGGAGCTATGAGATGTTGGATAAGTTTGATGCCAAATTGAAAGAGAATGGTGCCGAAATGCTTGATTATTTTGTTCCGTTCCTTCTAAGGATCATACACTTGATTCTTCCTCCACAGAAGAGTGACAATGAGAAGGAGTTGAAGAGGAGAAGGAATCAAATGGGAAAAAGGGGAAATTTTTTAGCCTTGGCCATCAGTGATGATAGGGAAAGTGCTAAGGAGTTCAATAAGGAGATTGAGTTGGAGGCTCTCACCAGAAGCGTGGGGACAGGGGTGTAG

mRNA sequence

ATGGGCCGGAGCTATGAGATGTTGGATAAGTTTGATGCCAAATTGAAAGAGAATGGTGCCGAAATGCTTGATTATTTTGTTCCGTTCCTTCTAAGGATCATACACTTGATTCTTCCTCCACAGAAGAGTGACAATGAGAAGGAGTTGAAGAGGAGAAGGAATCAAATGGGAAAAAGGGGAAATTTTTTAGCCTTGGCCATCAGTGATGATAGGGAAAGTGCTAAGGAGTTCAATAAGGAGATTGAGTTGGAGGCTCTCACCAGAAGCGTGGGGACAGGGGTGTAG

Coding sequence (CDS)

ATGGGCCGGAGCTATGAGATGTTGGATAAGTTTGATGCCAAATTGAAAGAGAATGGTGCCGAAATGCTTGATTATTTTGTTCCGTTCCTTCTAAGGATCATACACTTGATTCTTCCTCCACAGAAGAGTGACAATGAGAAGGAGTTGAAGAGGAGAAGGAATCAAATGGGAAAAAGGGGAAATTTTTTAGCCTTGGCCATCAGTGATGATAGGGAAAGTGCTAAGGAGTTCAATAAGGAGATTGAGTTGGAGGCTCTCACCAGAAGCGTGGGGACAGGGGTGTAG

Protein sequence

MGRSYEMLDKFDAKLKENGAEMLDYFVPFLLRIIHLILPPQKSDNEKELKRRRNQMGKRGNFLALAISDDRESAKEFNKEIELEALTRSVGTGV

Homology

[Close]

BLAST of Bhi06M000979 vs. Swiss-Prot
Match: sp|Q38953|DEAH5_ARATH (Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5 OS=Arabidopsis thaliana OX=3702 GN=At3g26560 PE=1 SV=2)

HSP 1 Score: 55.1 bits (131), Expect = 5.0e-07
Identity = 34/73 (46.58%), Postives = 42/73 (57.53%), Query Frame = 0


Query: 1   MGRSYEMLDKFDAKLKENGAEMLDYFVPFLLRIIHLILPPQ-KSDNEKELKRRRNQMGKR 60
           +GR  E +D+FD  LKE GAEM DYFV  LL  IH I PP+ KS+ +KE        G  
Sbjct: 40  LGRHSETVDEFDKNLKEAGAEMPDYFVRSLLTTIHGIYPPKPKSEKKKE-------EGDD 99

Query: 61  GNFLALAISDDRE 73
             F  LAI D ++
Sbjct: 100 QKFKGLAIKDTKD 105

[Close]

BLAST of Bhi06M000979 vs. TAIR10
Match: AT3G26560.1 (ATP-dependent RNA helicase, putative)

HSP 1 Score: 55.1 bits (131), Expect = 2.8e-08
Identity = 34/73 (46.58%), Postives = 42/73 (57.53%), Query Frame = 0


Query: 1   MGRSYEMLDKFDAKLKENGAEMLDYFVPFLLRIIHLILPPQ-KSDNEKELKRRRNQMGKR 60
           +GR  E +D+FD  LKE GAEM DYFV  LL  IH I PP+ KS+ +KE        G  
Sbjct: 40  LGRHSETVDEFDKNLKEAGAEMPDYFVRSLLTTIHGIYPPKPKSEKKKE-------EGDD 99

Query: 61  GNFLALAISDDRE 73
             F  LAI D ++
Sbjct: 100 QKFKGLAIKDTKD 105

[Close]

BLAST of Bhi06M000979 vs. TrEMBL
Match: tr|A0A1S3C2I4|A0A1S3C2I4_CUCME (probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5 OS=Cucumis melo OX=3656 GN=LOC103495726 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 1.3e-20
Identity = 54/74 (72.97%), Postives = 60/74 (81.08%), Query Frame = 0


Query: 1   MGRSYEMLDKFDAKLKENGAEMLDYFVPFLLRIIHLILPPQKSDNEKELKRRRNQMGKRG 60
           MGRS E +D+FDAKLKENGAEM DYFV  LLRIIHLILPPQK D+EKELK+ +   GK+G
Sbjct: 46  MGRSCETVDEFDAKLKENGAEMPDYFVRSLLRIIHLILPPQKGDSEKELKKEKESDGKKG 105

Query: 61  NFLALAISDDRESA 75
            F ALAI DDRE A
Sbjct: 106 KFRALAIGDDRERA 119

[Close]

BLAST of Bhi06M000979 vs. TrEMBL
Match: tr|E5GBQ6|E5GBQ6_CUCME (ATP-dependent RNA helicase (Fragment) OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 1.3e-20
Identity = 54/74 (72.97%), Postives = 60/74 (81.08%), Query Frame = 0


Query: 1   MGRSYEMLDKFDAKLKENGAEMLDYFVPFLLRIIHLILPPQKSDNEKELKRRRNQMGKRG 60
           MGRS E +D+FDAKLKENGAEM DYFV  LLRIIHLILPPQK D+EKELK+ +   GK+G
Sbjct: 46  MGRSCETVDEFDAKLKENGAEMPDYFVRSLLRIIHLILPPQKGDSEKELKKEKESDGKKG 105

Query: 61  NFLALAISDDRESA 75
            F ALAI DDRE A
Sbjct: 106 KFRALAIGDDRERA 119

[Close]

BLAST of Bhi06M000979 vs. TrEMBL
Match: tr|A0A2P6SGE4|A0A2P6SGE4_ROSCH (Putative RNA helicase OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr1g0351781 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 6.3e-15
Identity = 46/85 (54.12%), Postives = 61/85 (71.76%), Query Frame = 0


Query: 1   MGRSYEMLDKFDAKLKENGAEMLDYFVPFLLRIIHLILPPQKSDNEKELKRRRNQMGKRG 60
           MGR+ E +D+FDAKLKE+GAEM DYFV  LL IIH ILPP K+ +E + K+     G + 
Sbjct: 42  MGRNCESVDEFDAKLKEHGAEMPDYFVRTLLTIIHAILPP-KAKSENDSKKESTAEGSKS 101

Query: 61  NFLALAISDDRESAKEFNKEIELEA 86
            F AL+I+D+R+  K+  +EIELEA
Sbjct: 102 KFKALSIADNRDRVKDIQREIELEA 125

[Close]

BLAST of Bhi06M000979 vs. TrEMBL
Match: tr|A0A166C2V6|A0A166C2V6_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_011968 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 1.2e-13
Identity = 46/85 (54.12%), Postives = 55/85 (64.71%), Query Frame = 0


Query: 1   MGRSYEMLDKFDAKLKENGAEMLDYFVPFLLRIIHLILPPQKSDNEKELKRRRNQMGKRG 60
           +GR  E +D FDAKLKENGAEM DYFV  LL IIH ILPP    ++K  + ++ + G   
Sbjct: 44  LGRDCESVDVFDAKLKENGAEMPDYFVRTLLTIIHAILPPSVGKSKKGGEGKKGEEGGDS 103

Query: 61  NFLALAISDDRESAKEFNKEIELEA 86
            F AL ISD RE  KE  +EI LEA
Sbjct: 104 KFPALNISDSRERVKELEREIALEA 128

[Close]

BLAST of Bhi06M000979 vs. TrEMBL
Match: tr|K7M8L9|K7M8L9_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=100790809 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 1.6e-13
Identity = 45/79 (56.96%), Postives = 57/79 (72.15%), Query Frame = 0


Query: 1   MGRSYEMLDKFDAKLKENGAEMLDYFVPFLLRIIHLILPPQKSDNEKELKRRRNQMGKRG 60
           +GRS E +++FDAKLKENGAEM DYFV  LL IIH ILPP+  D++KE   + +  GK  
Sbjct: 44  LGRSSENVEEFDAKLKENGAEMPDYFVRTLLTIIHAILPPKSKDSKKE---KDSVSGKTT 103

Query: 61  NFLALAISDDRESAKEFNK 80
            F ALAI+D+R+ AKE  K
Sbjct: 104 KFKALAIADNRDRAKELQK 119

[Close]

BLAST of Bhi06M000979 vs. NCBI nr
Match: XP_022946177.1 (probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5 [Cucurbita moschata])

HSP 1 Score: 118.6 bits (296), Expect = 1.1e-23
Identity = 60/85 (70.59%), Postives = 67/85 (78.82%), Query Frame = 0


Query: 1   MGRSYEMLDKFDAKLKENGAEMLDYFVPFLLRIIHLILPPQKSDNEKELKRRRNQMGKRG 60
           MGR  E +D+FD+KLKENGAEM DYFV  LLRIIHLILPPQK DNEKE K+ +   GK+G
Sbjct: 46  MGRRCETVDEFDSKLKENGAEMPDYFVRSLLRIIHLILPPQKDDNEKEFKKEKESDGKKG 105

Query: 61  NFLALAISDDRESAKEFNKEIELEA 86
            F ALAI DD+E AKE  KEIELEA
Sbjct: 106 KFRALAIGDDKERAKELVKEIELEA 130

[Close]

BLAST of Bhi06M000979 vs. NCBI nr
Match: XP_022999145.1 (probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5 [Cucurbita maxima])

HSP 1 Score: 118.6 bits (296), Expect = 1.1e-23
Identity = 60/85 (70.59%), Postives = 67/85 (78.82%), Query Frame = 0


Query: 1   MGRSYEMLDKFDAKLKENGAEMLDYFVPFLLRIIHLILPPQKSDNEKELKRRRNQMGKRG 60
           MGR  E +D+FD+KLKENGAEM DYFV  LLRIIHLILPPQK DNEKE K+ +   GK+G
Sbjct: 46  MGRRCETVDEFDSKLKENGAEMPDYFVRSLLRIIHLILPPQKDDNEKEFKKEKESDGKKG 105

Query: 61  NFLALAISDDRESAKEFNKEIELEA 86
            F ALAI DD+E AKE  KEIELEA
Sbjct: 106 KFRALAIGDDKERAKELVKEIELEA 130

[Close]

BLAST of Bhi06M000979 vs. NCBI nr
Match: XP_023521965.1 (probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5 [Cucurbita pepo subsp. pepo] >XP_023546823.1 probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 108.6 bits (270), Expect = 1.2e-20
Identity = 54/79 (68.35%), Postives = 61/79 (77.22%), Query Frame = 0


Query: 1   MGRSYEMLDKFDAKLKENGAEMLDYFVPFLLRIIHLILPPQKSDNEKELKRRRNQMGKRG 60
           MGR  E +D+FD+KLKENGAEM DYFV  LLRIIHLILPPQK DNEKE K+ +   GK+G
Sbjct: 46  MGRRCETVDEFDSKLKENGAEMPDYFVRSLLRIIHLILPPQKDDNEKEFKKEKESDGKKG 105

Query: 61  NFLALAISDDRESAKEFNK 80
            F ALAI DD+E AKE  K
Sbjct: 106 KFRALAIGDDKERAKELVK 124

[Close]

BLAST of Bhi06M000979 vs. NCBI nr
Match: ADN33898.1 (ATP-dependent RNA helicase, partial [Cucumis melo subsp. melo])

HSP 1 Score: 107.8 bits (268), Expect = 2.0e-20
Identity = 54/74 (72.97%), Postives = 60/74 (81.08%), Query Frame = 0


Query: 1   MGRSYEMLDKFDAKLKENGAEMLDYFVPFLLRIIHLILPPQKSDNEKELKRRRNQMGKRG 60
           MGRS E +D+FDAKLKENGAEM DYFV  LLRIIHLILPPQK D+EKELK+ +   GK+G
Sbjct: 46  MGRSCETVDEFDAKLKENGAEMPDYFVRSLLRIIHLILPPQKGDSEKELKKEKESDGKKG 105

Query: 61  NFLALAISDDRESA 75
            F ALAI DDRE A
Sbjct: 106 KFRALAIGDDRERA 119

[Close]

BLAST of Bhi06M000979 vs. NCBI nr
Match: XP_008455589.1 (PREDICTED: probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5 [Cucumis melo])

HSP 1 Score: 107.8 bits (268), Expect = 2.0e-20
Identity = 54/74 (72.97%), Postives = 60/74 (81.08%), Query Frame = 0


Query: 1   MGRSYEMLDKFDAKLKENGAEMLDYFVPFLLRIIHLILPPQKSDNEKELKRRRNQMGKRG 60
           MGRS E +D+FDAKLKENGAEM DYFV  LLRIIHLILPPQK D+EKELK+ +   GK+G
Sbjct: 46  MGRSCETVDEFDAKLKENGAEMPDYFVRSLLRIIHLILPPQKGDSEKELKKEKESDGKKG 105

Query: 61  NFLALAISDDRESA 75
            F ALAI DDRE A
Sbjct: 106 KFRALAIGDDRERA 119

The following BLAST results are available for this feature:

BLAST of Bhi06M000979 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q38953\|DEAH5_ARATH	5.0e-07	46.58	Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5 OS=Arabidopsi...	[more]

BLAST of Bhi06M000979 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G26560.1	2.8e-08	46.58	ATP-dependent RNA helicase, putative	[more]

BLAST of Bhi06M000979 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3C2I4\|A0A1S3C2I4_CUCME	1.3e-20	72.97	probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5 OS=Cucumis me...	[more]
tr\|E5GBQ6\|E5GBQ6_CUCME	1.3e-20	72.97	ATP-dependent RNA helicase (Fragment) OS=Cucumis melo subsp. melo OX=412675 PE=4...	[more]
tr\|A0A2P6SGE4\|A0A2P6SGE4_ROSCH	6.3e-15	54.12	Putative RNA helicase OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr1g0351781 PE=4 S...	[more]
tr\|A0A166C2V6\|A0A166C2V6_DAUCA	1.2e-13	54.12	Uncharacterized protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_011968 ...	[more]
tr\|K7M8L9\|K7M8L9_SOYBN	1.6e-13	56.96	Uncharacterized protein OS=Glycine max OX=3847 GN=100790809 PE=4 SV=1	[more]

BLAST of Bhi06M000979 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022946177.1	1.1e-23	70.59	probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5 [Cucurbita mo...	[more]
XP_022999145.1	1.1e-23	70.59	probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5 [Cucurbita ma...	[more]
XP_023521965.1	1.2e-20	68.35	probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5 [Cucurbita pe...	[more]
ADN33898.1	2.0e-20	72.97	ATP-dependent RNA helicase, partial [Cucumis melo subsp. melo]	[more]
XP_008455589.1	2.0e-20	72.97	PREDICTED: probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5 [C...	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000390	spliceosomal complex disassembly
cellular_component	GO:0071013	catalytic step 2 spliceosome
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0004386	helicase activity
molecular_function	GO:0003723	RNA binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Bhi06G000979	Bhi06G000979	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.Bhi06M000979	cds.Bhi06M000979	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Bhi06M000979.exon1	Bhi06M000979.exon1	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Bhi06M000979	Bhi06M000979-protein	polypeptide