Bhi06G000979 (gene) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi06G000979
Type	gene
Organism	Benincasa hispida (Wax gourd)
Description	ATP-dependent RNA helicase
Location	chr6 : 31172098 .. 31172382 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGCCGGAGCTATGAGATGTTGGATAAGTTTGATGCCAAATTGAAAGAGAATGGTGCCGAAATGCTTGATTATTTTGTTCCGTTCCTTCTAAGGATCATACACTTGATTCTTCCTCCACAGAAGAGTGACAATGAGAAGGAGTTGAAGAGGAGAAGGAATCAAATGGGAAAAAGGGGAAATTTTTTAGCCTTGGCCATCAGTGATGATAGGGAAAGTGCTAAGGAGTTCAATAAGGAGATTGAGTTGGAGGCTCTCACCAGAAGCGTGGGGACAGGGGTGTAG

mRNA sequence

ATGGGCCGGAGCTATGAGATGTTGGATAAGTTTGATGCCAAATTGAAAGAGAATGGTGCCGAAATGCTTGATTATTTTGTTCCGTTCCTTCTAAGGATCATACACTTGATTCTTCCTCCACAGAAGAGTGACAATGAGAAGGAGTTGAAGAGGAGAAGGAATCAAATGGGAAAAAGGGGAAATTTTTTAGCCTTGGCCATCAGTGATGATAGGGAAAGTGCTAAGGAGTTCAATAAGGAGATTGAGTTGGAGGCTCTCACCAGAAGCGTGGGGACAGGGGTGTAG

Coding sequence (CDS)

ATGGGCCGGAGCTATGAGATGTTGGATAAGTTTGATGCCAAATTGAAAGAGAATGGTGCCGAAATGCTTGATTATTTTGTTCCGTTCCTTCTAAGGATCATACACTTGATTCTTCCTCCACAGAAGAGTGACAATGAGAAGGAGTTGAAGAGGAGAAGGAATCAAATGGGAAAAAGGGGAAATTTTTTAGCCTTGGCCATCAGTGATGATAGGGAAAGTGCTAAGGAGTTCAATAAGGAGATTGAGTTGGAGGCTCTCACCAGAAGCGTGGGGACAGGGGTGTAG

Protein sequence

MGRSYEMLDKFDAKLKENGAEMLDYFVPFLLRIIHLILPPQKSDNEKELKRRRNQMGKRGNFLALAISDDRESAKEFNKEIELEALTRSVGTGV

Homology

[Close]

BLAST of Bhi06G000979 vs. Swiss-Prot
Match: sp|Q38953|DEAH5_ARATH (Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5 OS=Arabidopsis thaliana OX=3702 GN=At3g26560 PE=1 SV=2)

HSP 1 Score: 55.1 bits (131), Expect = 5.0e-07
Identity = 34/73 (46.58%), Postives = 42/73 (57.53%), Query Frame = 0


Query: 1   MGRSYEMLDKFDAKLKENGAEMLDYFVPFLLRIIHLILPPQ-KSDNEKELKRRRNQMGKR 60
           +GR  E +D+FD  LKE GAEM DYFV  LL  IH I PP+ KS+ +KE        G  
Sbjct: 40  LGRHSETVDEFDKNLKEAGAEMPDYFVRSLLTTIHGIYPPKPKSEKKKE-------EGDD 99

Query: 61  GNFLALAISDDRE 73
             F  LAI D ++
Sbjct: 100 QKFKGLAIKDTKD 105

[Close]

BLAST of Bhi06G000979 vs. TAIR10
Match: AT3G26560.1 (ATP-dependent RNA helicase, putative)

HSP 1 Score: 55.1 bits (131), Expect = 2.8e-08
Identity = 34/73 (46.58%), Postives = 42/73 (57.53%), Query Frame = 0


Query: 1   MGRSYEMLDKFDAKLKENGAEMLDYFVPFLLRIIHLILPPQ-KSDNEKELKRRRNQMGKR 60
           +GR  E +D+FD  LKE GAEM DYFV  LL  IH I PP+ KS+ +KE        G  
Sbjct: 40  LGRHSETVDEFDKNLKEAGAEMPDYFVRSLLTTIHGIYPPKPKSEKKKE-------EGDD 99

Query: 61  GNFLALAISDDRE 73
             F  LAI D ++
Sbjct: 100 QKFKGLAIKDTKD 105

[Close]

BLAST of Bhi06G000979 vs. TrEMBL
Match: tr|A0A1S3C2I4|A0A1S3C2I4_CUCME (probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5 OS=Cucumis melo OX=3656 GN=LOC103495726 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 1.3e-20
Identity = 54/74 (72.97%), Postives = 60/74 (81.08%), Query Frame = 0


Query: 1   MGRSYEMLDKFDAKLKENGAEMLDYFVPFLLRIIHLILPPQKSDNEKELKRRRNQMGKRG 60
           MGRS E +D+FDAKLKENGAEM DYFV  LLRIIHLILPPQK D+EKELK+ +   GK+G
Sbjct: 46  MGRSCETVDEFDAKLKENGAEMPDYFVRSLLRIIHLILPPQKGDSEKELKKEKESDGKKG 105

Query: 61  NFLALAISDDRESA 75
            F ALAI DDRE A
Sbjct: 106 KFRALAIGDDRERA 119

[Close]

BLAST of Bhi06G000979 vs. TrEMBL
Match: tr|E5GBQ6|E5GBQ6_CUCME (ATP-dependent RNA helicase (Fragment) OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 1.3e-20
Identity = 54/74 (72.97%), Postives = 60/74 (81.08%), Query Frame = 0


Query: 1   MGRSYEMLDKFDAKLKENGAEMLDYFVPFLLRIIHLILPPQKSDNEKELKRRRNQMGKRG 60
           MGRS E +D+FDAKLKENGAEM DYFV  LLRIIHLILPPQK D+EKELK+ +   GK+G
Sbjct: 46  MGRSCETVDEFDAKLKENGAEMPDYFVRSLLRIIHLILPPQKGDSEKELKKEKESDGKKG 105

Query: 61  NFLALAISDDRESA 75
            F ALAI DDRE A
Sbjct: 106 KFRALAIGDDRERA 119

[Close]

BLAST of Bhi06G000979 vs. TrEMBL
Match: tr|A0A2P6SGE4|A0A2P6SGE4_ROSCH (Putative RNA helicase OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr1g0351781 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 6.3e-15
Identity = 46/85 (54.12%), Postives = 61/85 (71.76%), Query Frame = 0


Query: 1   MGRSYEMLDKFDAKLKENGAEMLDYFVPFLLRIIHLILPPQKSDNEKELKRRRNQMGKRG 60
           MGR+ E +D+FDAKLKE+GAEM DYFV  LL IIH ILPP K+ +E + K+     G + 
Sbjct: 42  MGRNCESVDEFDAKLKEHGAEMPDYFVRTLLTIIHAILPP-KAKSENDSKKESTAEGSKS 101

Query: 61  NFLALAISDDRESAKEFNKEIELEA 86
            F AL+I+D+R+  K+  +EIELEA
Sbjct: 102 KFKALSIADNRDRVKDIQREIELEA 125

[Close]

BLAST of Bhi06G000979 vs. TrEMBL
Match: tr|A0A166C2V6|A0A166C2V6_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_011968 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 1.2e-13
Identity = 46/85 (54.12%), Postives = 55/85 (64.71%), Query Frame = 0


Query: 1   MGRSYEMLDKFDAKLKENGAEMLDYFVPFLLRIIHLILPPQKSDNEKELKRRRNQMGKRG 60
           +GR  E +D FDAKLKENGAEM DYFV  LL IIH ILPP    ++K  + ++ + G   
Sbjct: 44  LGRDCESVDVFDAKLKENGAEMPDYFVRTLLTIIHAILPPSVGKSKKGGEGKKGEEGGDS 103

Query: 61  NFLALAISDDRESAKEFNKEIELEA 86
            F AL ISD RE  KE  +EI LEA
Sbjct: 104 KFPALNISDSRERVKELEREIALEA 128

[Close]

BLAST of Bhi06G000979 vs. TrEMBL
Match: tr|K7M8L9|K7M8L9_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=100790809 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 1.6e-13
Identity = 45/79 (56.96%), Postives = 57/79 (72.15%), Query Frame = 0


Query: 1   MGRSYEMLDKFDAKLKENGAEMLDYFVPFLLRIIHLILPPQKSDNEKELKRRRNQMGKRG 60
           +GRS E +++FDAKLKENGAEM DYFV  LL IIH ILPP+  D++KE   + +  GK  
Sbjct: 44  LGRSSENVEEFDAKLKENGAEMPDYFVRTLLTIIHAILPPKSKDSKKE---KDSVSGKTT 103

Query: 61  NFLALAISDDRESAKEFNK 80
            F ALAI+D+R+ AKE  K
Sbjct: 104 KFKALAIADNRDRAKELQK 119

[Close]

BLAST of Bhi06G000979 vs. NCBI nr
Match: XP_022946177.1 (probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5 [Cucurbita moschata])

HSP 1 Score: 118.6 bits (296), Expect = 1.1e-23
Identity = 60/85 (70.59%), Postives = 67/85 (78.82%), Query Frame = 0


Query: 1   MGRSYEMLDKFDAKLKENGAEMLDYFVPFLLRIIHLILPPQKSDNEKELKRRRNQMGKRG 60
           MGR  E +D+FD+KLKENGAEM DYFV  LLRIIHLILPPQK DNEKE K+ +   GK+G
Sbjct: 46  MGRRCETVDEFDSKLKENGAEMPDYFVRSLLRIIHLILPPQKDDNEKEFKKEKESDGKKG 105

Query: 61  NFLALAISDDRESAKEFNKEIELEA 86
            F ALAI DD+E AKE  KEIELEA
Sbjct: 106 KFRALAIGDDKERAKELVKEIELEA 130

[Close]

BLAST of Bhi06G000979 vs. NCBI nr
Match: XP_022999145.1 (probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5 [Cucurbita maxima])

HSP 1 Score: 118.6 bits (296), Expect = 1.1e-23
Identity = 60/85 (70.59%), Postives = 67/85 (78.82%), Query Frame = 0


Query: 1   MGRSYEMLDKFDAKLKENGAEMLDYFVPFLLRIIHLILPPQKSDNEKELKRRRNQMGKRG 60
           MGR  E +D+FD+KLKENGAEM DYFV  LLRIIHLILPPQK DNEKE K+ +   GK+G
Sbjct: 46  MGRRCETVDEFDSKLKENGAEMPDYFVRSLLRIIHLILPPQKDDNEKEFKKEKESDGKKG 105

Query: 61  NFLALAISDDRESAKEFNKEIELEA 86
            F ALAI DD+E AKE  KEIELEA
Sbjct: 106 KFRALAIGDDKERAKELVKEIELEA 130

[Close]

BLAST of Bhi06G000979 vs. NCBI nr
Match: XP_023521965.1 (probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5 [Cucurbita pepo subsp. pepo] >XP_023546823.1 probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 108.6 bits (270), Expect = 1.2e-20
Identity = 54/79 (68.35%), Postives = 61/79 (77.22%), Query Frame = 0


Query: 1   MGRSYEMLDKFDAKLKENGAEMLDYFVPFLLRIIHLILPPQKSDNEKELKRRRNQMGKRG 60
           MGR  E +D+FD+KLKENGAEM DYFV  LLRIIHLILPPQK DNEKE K+ +   GK+G
Sbjct: 46  MGRRCETVDEFDSKLKENGAEMPDYFVRSLLRIIHLILPPQKDDNEKEFKKEKESDGKKG 105

Query: 61  NFLALAISDDRESAKEFNK 80
            F ALAI DD+E AKE  K
Sbjct: 106 KFRALAIGDDKERAKELVK 124

[Close]

BLAST of Bhi06G000979 vs. NCBI nr
Match: ADN33898.1 (ATP-dependent RNA helicase, partial [Cucumis melo subsp. melo])

HSP 1 Score: 107.8 bits (268), Expect = 2.0e-20
Identity = 54/74 (72.97%), Postives = 60/74 (81.08%), Query Frame = 0


Query: 1   MGRSYEMLDKFDAKLKENGAEMLDYFVPFLLRIIHLILPPQKSDNEKELKRRRNQMGKRG 60
           MGRS E +D+FDAKLKENGAEM DYFV  LLRIIHLILPPQK D+EKELK+ +   GK+G
Sbjct: 46  MGRSCETVDEFDAKLKENGAEMPDYFVRSLLRIIHLILPPQKGDSEKELKKEKESDGKKG 105

Query: 61  NFLALAISDDRESA 75
            F ALAI DDRE A
Sbjct: 106 KFRALAIGDDRERA 119

[Close]

BLAST of Bhi06G000979 vs. NCBI nr
Match: XP_008455589.1 (PREDICTED: probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5 [Cucumis melo])

HSP 1 Score: 107.8 bits (268), Expect = 2.0e-20
Identity = 54/74 (72.97%), Postives = 60/74 (81.08%), Query Frame = 0


Query: 1   MGRSYEMLDKFDAKLKENGAEMLDYFVPFLLRIIHLILPPQKSDNEKELKRRRNQMGKRG 60
           MGRS E +D+FDAKLKENGAEM DYFV  LLRIIHLILPPQK D+EKELK+ +   GK+G
Sbjct: 46  MGRSCETVDEFDAKLKENGAEMPDYFVRSLLRIIHLILPPQKGDSEKELKKEKESDGKKG 105

Query: 61  NFLALAISDDRESA 75
            F ALAI DDRE A
Sbjct: 106 KFRALAIGDDRERA 119

The following BLAST results are available for this feature:

BLAST of Bhi06G000979 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q38953\|DEAH5_ARATH	5.0e-07	46.58	Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5 OS=Arabidopsi...	[more]

BLAST of Bhi06G000979 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G26560.1	2.8e-08	46.58	ATP-dependent RNA helicase, putative	[more]

BLAST of Bhi06G000979 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3C2I4\|A0A1S3C2I4_CUCME	1.3e-20	72.97	probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5 OS=Cucumis me...	[more]
tr\|E5GBQ6\|E5GBQ6_CUCME	1.3e-20	72.97	ATP-dependent RNA helicase (Fragment) OS=Cucumis melo subsp. melo OX=412675 PE=4...	[more]
tr\|A0A2P6SGE4\|A0A2P6SGE4_ROSCH	6.3e-15	54.12	Putative RNA helicase OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr1g0351781 PE=4 S...	[more]
tr\|A0A166C2V6\|A0A166C2V6_DAUCA	1.2e-13	54.12	Uncharacterized protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_011968 ...	[more]
tr\|K7M8L9\|K7M8L9_SOYBN	1.6e-13	56.96	Uncharacterized protein OS=Glycine max OX=3847 GN=100790809 PE=4 SV=1	[more]

BLAST of Bhi06G000979 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022946177.1	1.1e-23	70.59	probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5 [Cucurbita mo...	[more]
XP_022999145.1	1.1e-23	70.59	probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5 [Cucurbita ma...	[more]
XP_023521965.1	1.2e-20	68.35	probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5 [Cucurbita pe...	[more]
ADN33898.1	2.0e-20	72.97	ATP-dependent RNA helicase, partial [Cucumis melo subsp. melo]	[more]
XP_008455589.1	2.0e-20	72.97	PREDICTED: probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5 [C...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000390	spliceosomal complex disassembly
cellular_component	GO:0071013	catalytic step 2 spliceosome
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0004386	helicase activity
molecular_function	GO:0003723	RNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi06M000979	Bhi06M000979	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Bhi06G000979	Cucumber (Gy14) v1	cgywgoB366
Bhi06G000979	Cucumber (Gy14) v2	cgybwgoB132
Bhi06G000979	Cucurbita maxima (Rimu)	cmawgoB0183
Bhi06G000979	Cucurbita maxima (Rimu)	cmawgoB0930
Bhi06G000979	Cucurbita moschata (Rifu)	cmowgoB0180
Bhi06G000979	Cucurbita moschata (Rifu)	cmowgoB0933
Bhi06G000979	Cucurbita pepo (Zucchini)	cpewgoB0127
Bhi06G000979	Cucurbita pepo (Zucchini)	cpewgoB1016
Bhi06G000979	Wild cucumber (PI 183967)	cpiwgoB139
Bhi06G000979	Cucumber (Chinese Long) v3	cucwgoB146
Bhi06G000979	Cucumber (Chinese Long) v2	cuwgoB139
Bhi06G000979	Bottle gourd (USVL1VR-Ls)	lsiwgoB110
Bhi06G000979	Melon (DHL92) v3.6.1	medwgoB456
Bhi06G000979	Melon (DHL92) v3.5.1	mewgoB456
Bhi06G000979	Watermelon (Charleston Gray)	wcgwgoB142
Bhi06G000979	Watermelon (97103) v2	wgowmbB115
Bhi06G000979	Watermelon (97103) v1	wgowmB148
Bhi06G000979	Silver-seed gourd	carwgoB0215