Bhi06M000932 (mRNA) Wax gourd

Overview
NameBhi06M000932
TypemRNA
OrganismBenincasa hispida (Wax gourd)
Descriptionchromatin-remodeling complex subunit ies6
Locationchr6 : 29435688 .. 29436396 (-)
Sequence length170
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCATCCATGCAAGAGAATTTGTGATATAACAGGATATGAGGTTTGAAACTTTTGGTAGTTTATAACTCAGCTTTGCTTTCTAAACTAGAATAGCAATGAATTACGGATTCCCTTCTTTATAGCTCATGATTTTTGTAATGGTTCTAGAGTATAATGAATCTGAACTACTGATGTATAGAGTGAATTGCATGCATTAGCTTTGCTTTCAGCCCTAACCATATTAATTTCTCTGTCTATTTTCGTAGTATTTTAAGAAATACCACTCTTGTTTTTCTATATTTTCACCTAAATATTTTCAAGTAATTAATTAATTATGTACATTTGTCCAAACCTCTTTGATTTTTTTTTTTTGCTTGTCTGCAATCAAAATTTCTTGCGGATATCACGTCATTCTAAACTTGTTGAGAGGCATCGTGACTTAAACATTAACAAATTTTTTTATTAGGTATAATACAAATAAGAAGTAAAAAACAGTTATTACCCTTAGCTCTGGTCGTGTCTTTACAAGACCTTTCTTTGTTTTCACCCAAATAACCGTTTGATTTCACTTCAGTAAGTCTCGACGTTGTTATTATTCAGGCACCATACTATGATCCTAGGACTACTCTTCGATATGCAAACGCTGATATCTTCAAGGTCATAAGATCACTTCCTAATGAGTACGTTCAGAGGTATTTGGCCATGAGAAATGCAGCGGTAGTTTTAAG

mRNA sequence

ATGCATCCATGCAAGAGAATTTGTGATATAACAGGATATGAGGCACCATACTATGATCCTAGGACTACTCTTCGATATGCAAACGCTGATATCTTCAAGGTCATAAGATCACTTCCTAATGAGTACGTTCAGAGGTATTTGGCCATGAGAAATGCAGCGGTAGTTTTAAG

Coding sequence (CDS)

ATGCATCCATGCAAGAGAATTTGTGATATAACAGGATATGAGGCACCATACTATGATCCTAGGACTACTCTTCGATATGCAAACGCTGATATCTTCAAGGTCATAAGATCACTTCCTAATGAGTACGTTCAGAGGTATTTGGCCATGAGAAATGCAGCGGTAGTTTTAAG

Protein sequence

MHPCKRICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNAAVVL
Homology
[Close]
BLAST of Bhi06M000932 vs. Swiss-Prot
Match: sp|Q9UTE8|IES6_SCHPO (Chromatin-remodeling complex subunit ies6 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=ies6 PE=3 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 3.0e-07
Identity = 26/54 (48.15%), Postives = 36/54 (66.67%), Query Frame = 0 

Query: 3   PCKRICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNAAVVL 57
           P  + CD+TG  A Y DP+T LRY N +I+ +IR LP+   Q YL +R++ VVL
Sbjct: 63  PQPKYCDVTGLLAIYTDPKTRLRYHNKEIYGLIRELPSGADQEYLKLRSSDVVL 116

[Close]
BLAST of Bhi06M000932 vs. TAIR10
Match: AT4G38495.1 (YL1 nuclear, C-terminal (InterPro:IPR013272))

HSP 1 Score: 88.2 bits (217), Expect = 1.8e-18
Identity = 38/54 (70.37%), Postives = 47/54 (87.04%), Query Frame = 0 

Query: 3   PCKRICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNAAVVL 57
           PCKR+CDITGYEAPY DPRT LRYANA +F+ +RSL ++ V +YL++RNAAVVL
Sbjct: 70  PCKRLCDITGYEAPYVDPRTNLRYANAHVFQTVRSLSSDQVHQYLSIRNAAVVL 123

[Close]
BLAST of Bhi06M000932 vs. TAIR10
Match: AT2G36740.1 (sequence-specific DNA binding transcription factors;DNA binding;DNA binding)

HSP 1 Score: 42.0 bits (97), Expect = 1.4e-04
Identity = 19/35 (54.29%), Postives = 22/35 (62.86%), Query Frame = 0 

Query: 2   HPCKRICDITGYEAPYYDPRTTLRYANADIFKVIR 37
           +P K +C ITG  A Y DP+T L YA  D FK IR
Sbjct: 265 YPEKAVCVITGLPAKYRDPKTGLPYATRDAFKAIR 299

[Close]
BLAST of Bhi06M000932 vs. TrEMBL
Match: tr|A0A1S3B479|A0A1S3B479_CUCME (INO80 complex subunit C isoform X1 OS=Cucumis melo OX=3656 GN=LOC103485837 PE=4 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 6.8e-25
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 0 

Query: 1   MHPCKRICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNAAVVL 57
           MHPCKRICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNAAVVL
Sbjct: 68  MHPCKRICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNAAVVL 123

[Close]
BLAST of Bhi06M000932 vs. TrEMBL
Match: tr|A0A0A0LJN6|A0A0A0LJN6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G077540 PE=4 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 6.8e-25
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 0 

Query: 1   MHPCKRICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNAAVVL 57
           MHPCKRICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNAAVVL
Sbjct: 68  MHPCKRICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNAAVVL 123

[Close]
BLAST of Bhi06M000932 vs. TrEMBL
Match: tr|A0A251N6I8|A0A251N6I8_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_7G004000 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 2.2e-23
Identity = 53/56 (94.64%), Postives = 55/56 (98.21%), Query Frame = 0 

Query: 1   MHPCKRICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNAAVVL 57
           MHPCKRICDITGYEAPYYDPRT LRYANADIFK+IRSLPNEYVQRYLA+RNAAVVL
Sbjct: 68  MHPCKRICDITGYEAPYYDPRTGLRYANADIFKLIRSLPNEYVQRYLALRNAAVVL 123

[Close]
BLAST of Bhi06M000932 vs. TrEMBL
Match: tr|M5VTH2|M5VTH2_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica OX=3760 GN=PRUPE_ppa024988mg PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 2.2e-23
Identity = 53/56 (94.64%), Postives = 55/56 (98.21%), Query Frame = 0 

Query: 1   MHPCKRICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNAAVVL 57
           MHPCKRICDITGYEAPYYDPRT LRYANADIFK+IRSLPNEYVQRYLA+RNAAVVL
Sbjct: 188 MHPCKRICDITGYEAPYYDPRTGLRYANADIFKLIRSLPNEYVQRYLALRNAAVVL 243

[Close]
BLAST of Bhi06M000932 vs. TrEMBL
Match: tr|I3SJK2|I3SJK2_LOTJA (Uncharacterized protein OS=Lotus japonicus OX=34305 PE=2 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 3.7e-23
Identity = 50/56 (89.29%), Postives = 55/56 (98.21%), Query Frame = 0 

Query: 1   MHPCKRICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNAAVVL 57
           MHPCKRICDITGYEAPYYDPRTTLRYAN D+FK+IR+LPN+YVQRYLA+RNAAVVL
Sbjct: 68  MHPCKRICDITGYEAPYYDPRTTLRYANTDVFKIIRALPNDYVQRYLALRNAAVVL 123

[Close]
BLAST of Bhi06M000932 vs. NCBI nr
Match: XP_004152811.1 (PREDICTED: INO80 complex subunit C isoform X1 [Cucumis sativus] >XP_011649021.1 PREDICTED: INO80 complex subunit C isoform X2 [Cucumis sativus] >KGN61299.1 hypothetical protein Csa_2G077540 [Cucumis sativus])

HSP 1 Score: 121.3 bits (303), Expect = 1.0e-24
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 0 

Query: 1   MHPCKRICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNAAVVL 57
           MHPCKRICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNAAVVL
Sbjct: 68  MHPCKRICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNAAVVL 123

[Close]
BLAST of Bhi06M000932 vs. NCBI nr
Match: XP_008441777.1 (PREDICTED: INO80 complex subunit C isoform X1 [Cucumis melo] >XP_008441778.1 PREDICTED: INO80 complex subunit C isoform X2 [Cucumis melo])

HSP 1 Score: 121.3 bits (303), Expect = 1.0e-24
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 0 

Query: 1   MHPCKRICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNAAVVL 57
           MHPCKRICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNAAVVL
Sbjct: 68  MHPCKRICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNAAVVL 123

[Close]
BLAST of Bhi06M000932 vs. NCBI nr
Match: XP_022937916.1 (INO80 complex subunit C isoform X1 [Cucurbita moschata] >XP_022937917.1 INO80 complex subunit C isoform X1 [Cucurbita moschata] >XP_022937918.1 INO80 complex subunit C isoform X2 [Cucurbita moschata] >XP_022966011.1 INO80 complex subunit C isoform X1 [Cucurbita maxima] >XP_022966012.1 INO80 complex subunit C isoform X1 [Cucurbita maxima] >XP_022966013.1 INO80 complex subunit C isoform X2 [Cucurbita maxima] >XP_023536867.1 INO80 complex subunit C-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 120.2 bits (300), Expect = 2.3e-24
Identity = 55/56 (98.21%), Postives = 56/56 (100.00%), Query Frame = 0 

Query: 1   MHPCKRICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNAAVVL 57
           MHPCK+ICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNAAVVL
Sbjct: 68  MHPCKKICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNAAVVL 123

[Close]
BLAST of Bhi06M000932 vs. NCBI nr
Match: XP_023537972.1 (chromatin-remodeling complex subunit ies6-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 120.2 bits (300), Expect = 2.3e-24
Identity = 55/56 (98.21%), Postives = 56/56 (100.00%), Query Frame = 0 

Query: 1  MHPCKRICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNAAVVL 57
          MHPCK+ICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNAAVVL
Sbjct: 12 MHPCKKICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNAAVVL 67

[Close]
BLAST of Bhi06M000932 vs. NCBI nr
Match: XP_022144563.1 (INO80 complex subunit C isoform X1 [Momordica charantia] >XP_022144564.1 INO80 complex subunit C isoform X1 [Momordica charantia] >XP_022144565.1 INO80 complex subunit C isoform X2 [Momordica charantia])

HSP 1 Score: 119.4 bits (298), Expect = 3.9e-24
Identity = 53/56 (94.64%), Postives = 56/56 (100.00%), Query Frame = 0 

Query: 1   MHPCKRICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNAAVVL 57
           MHPCK+ICDITGYEAPYYDPRTTLRYANAD+FKVIRSLPNEYVQRYLAMRNAAV+L
Sbjct: 68  MHPCKKICDITGYEAPYYDPRTTLRYANADVFKVIRSLPNEYVQRYLAMRNAAVIL 123

The following BLAST results are available for this feature:
BLAST of Bhi06M000932 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9UTE8|IES6_SCHPO3.0e-0748.15Chromatin-remodeling complex subunit ies6 OS=Schizosaccharomyces pombe (strain 9... [more]
BLAST of Bhi06M000932 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G38495.11.8e-1870.37YL1 nuclear, C-terminal (InterPro:IPR013272)[more]
AT2G36740.11.4e-0454.29sequence-specific DNA binding transcription factors;DNA binding;DNA binding[more]
BLAST of Bhi06M000932 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3B479|A0A1S3B479_CUCME6.8e-25100.00INO80 complex subunit C isoform X1 OS=Cucumis melo OX=3656 GN=LOC103485837 PE=4 ... [more]
tr|A0A0A0LJN6|A0A0A0LJN6_CUCSA6.8e-25100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G077540 PE=4 SV=1[more]
tr|A0A251N6I8|A0A251N6I8_PRUPE2.2e-2394.64Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_7G004000 PE=4 SV=1[more]
tr|M5VTH2|M5VTH2_PRUPE2.2e-2394.64Uncharacterized protein (Fragment) OS=Prunus persica OX=3760 GN=PRUPE_ppa024988m... [more]
tr|I3SJK2|I3SJK2_LOTJA3.7e-2389.29Uncharacterized protein OS=Lotus japonicus OX=34305 PE=2 SV=1[more]
BLAST of Bhi06M000932 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004152811.11.0e-24100.00PREDICTED: INO80 complex subunit C isoform X1 [Cucumis sativus] >XP_011649021.1 ... [more]
XP_008441777.11.0e-24100.00PREDICTED: INO80 complex subunit C isoform X1 [Cucumis melo] >XP_008441778.1 PRE... [more]
XP_022937916.12.3e-2498.21INO80 complex subunit C isoform X1 [Cucurbita moschata] >XP_022937917.1 INO80 co... [more]
XP_023537972.12.3e-2498.21chromatin-remodeling complex subunit ies6-like [Cucurbita pepo subsp. pepo][more]
XP_022144563.13.9e-2494.64INO80 complex subunit C isoform X1 [Momordica charantia] >XP_022144564.1 INO80 c... [more]
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0031011Ino80 complex
Vocabulary: Biological Process
TermDefinition
GO:0006338chromatin remodeling
Vocabulary: INTERPRO
TermDefinition
IPR029525INO80C/Ies6
IPR013272Vps72/YL1_C
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006338 chromatin remodeling
cellular_component GO:0031011 Ino80 complex
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Bhi06G000932Bhi06G000932gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Bhi06M000932.exon2Bhi06M000932.exon2exon
Bhi06M000932.exon1Bhi06M000932.exon1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
cds.Bhi06M000932cds.Bhi06M000932CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Bhi06M000932Bhi06M000932-proteinpolypeptide


InterPro
Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013272Vps72/YL1, C-terminalSMARTSM00993YL1_C_2coord: 6..35
e-value: 2.1E-12
score: 57.2
IPR013272Vps72/YL1, C-terminalPFAMPF08265YL1_Ccoord: 7..35
e-value: 4.3E-15
score: 55.0
IPR029525INO80 complex, subunit Ies6PANTHERPTHR31200FAMILY NOT NAMEDcoord: 1..55