Bhi05M001281 (mRNA) Wax gourd

NameBhi05M001281
TypemRNA
OrganismBenincasa hispida (Wax gourd)
DescriptionUBN2_3 domain-containing protein
Locationchr5 : 50672413 .. 50672743 (+)
Sequence length331
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTGACTACAGATCAAGCAGGTGGTTATTTGGATCAATGACGCCAACCATTGCCTCTGAAGTTGTTGGATTCTCAACATTGGGAGGAGTTTGGCAAGCTCTAGATAGTCTATTTGGTGCAACAAGTAGGGTACCCATCAACCAACTAAGAGAAATTCTTCAAACTACAAGAAAGGGAACTATGGGTATGGCAGAATACTTGTCTTTGATGAAACAGACAAGTGAGAGCATGAAATTGGCTGGTTCACCAGTATCTTTTGACGATTTAATCTCTTATGTTGTAGCAGGTCTTGATGCTAAGTATCTTCCTATTACTTGTACTATTGAAG

mRNA sequence

ATGGGTGACTACAGATCAAGCAGGTGGTTATTTGGATCAATGACGCCAACCATTGCCTCTGAAGTTGTTGGATTCTCAACATTGGGAGGAGTTTGGCAAGCTCTAGATAGTCTATTTGGTGCAACAAGTAGGGTACCCATCAACCAACTAAGAGAAATTCTTCAAACTACAAGAAAGGGAACTATGGGTATGGCAGAATACTTGTCTTTGATGAAACAGACAAGTGAGAGCATGAAATTGGCTGGTTCACCAGTATCTTTTGACGATTTAATCTCTTATGTTGTAGCAGGTCTTGATGCTAAGTATCTTCCTATTACTTGTACTATTGAAG

Coding sequence (CDS)

ATGGGTGACTACAGATCAAGCAGGTGGTTATTTGGATCAATGACGCCAACCATTGCCTCTGAAGTTGTTGGATTCTCAACATTGGGAGGAGTTTGGCAAGCTCTAGATAGTCTATTTGGTGCAACAAGTAGGGTACCCATCAACCAACTAAGAGAAATTCTTCAAACTACAAGAAAGGGAACTATGGGTATGGCAGAATACTTGTCTTTGATGAAACAGACAAGTGAGAGCATGAAATTGGCTGGTTCACCAGTATCTTTTGACGATTTAATCTCTTATGTTGTAGCAGGTCTTGATGCTAAGTATCTTCCTATTACTTGTACTATTGAAG

Protein sequence

MGDYRSSRWLFGSMTPTIASEVVGFSTLGGVWQALDSLFGATSRVPINQLREILQTTRKGTMGMAEYLSLMKQTSESMKLAGSPVSFDDLISYVVAGLDAKYLPITCTIE
BLAST of Bhi05M001281 vs. TAIR10
Match: AT1G34070.1 (Retrotransposon gag protein (InterPro:IPR005162))

HSP 1 Score: 43.1 bits (100), Expect = 1.3e-04
Identity = 27/94 (28.72%), Postives = 48/94 (51.06%), Query Frame = 0

Query: 10  LFGSMTP-TIASEVVGFSTLGGVWQALDSLFGATSRVPINQLREILQTTRKGTMGMAEYL 69
           L+G++TP       V  ST   +W  + + F         +L   L+T   G M +A+Y 
Sbjct: 76  LYGTLTPKQFQGSFVTSSTSRDIWLRIKNQFRNNKDARALRLDSELRTKDIGDMRVADYY 135

Query: 70  SLMKQTSESMKLAGSPVSFDDLISYVVAGLDAKY 103
             MK+ ++S++    PV+  +L+ YV+ GL+ K+
Sbjct: 136 RKMKKLADSLRNVDVPVTDRNLVMYVLNGLNPKF 169

BLAST of Bhi05M001281 vs. TrEMBL
Match: tr|A0A0A0LUB0|A0A0A0LUB0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G064810 PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 4.8e-22
Identity = 55/95 (57.89%), Postives = 69/95 (72.63%), Query Frame = 0

Query: 16  PTIASEVVGFSTLGGVWQALDSLFGATSRVPINQLREILQTTRKGTMGMAEYLSLMKQTS 75
           P +ASEVV       +W AL+ L+GATS+ P   +  ILQ TRKGTM M EYLS+MKQT 
Sbjct: 158 PLVASEVVNLIMSRELWLALEELYGATSKSPYKSIGIILQNTRKGTMRMTEYLSMMKQTL 217

Query: 76  ESMKLAGSPVSFDDLISYVVAGLDAKYLPITCTIE 111
           E+M+LAGSP+S +DL SYV+ GLD +Y+PI C IE
Sbjct: 218 ENMQLAGSPISHEDLFSYVLVGLDVEYIPIVCDIE 252

BLAST of Bhi05M001281 vs. TrEMBL
Match: tr|A0A2K3MLQ3|A0A2K3MLQ3_TRIPR (Glutamate receptor OS=Trifolium pratense OX=57577 GN=L195_g047885 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 3.1e-13
Identity = 44/100 (44.00%), Postives = 62/100 (62.00%), Query Frame = 0

Query: 3   DYRSSRWLFGSMTPTIASEVVGFSTLGGVWQALDSLFGATSRVPINQLREILQTTRKGTM 62
           D +   WL  SMT  IA++++   T   +W A  SL GA SR  +  L+    +TRKGT+
Sbjct: 75  DQKILGWLLNSMTHDIATQLLHCDTSKELWDAAKSLAGAHSRSRVTLLKSEFHSTRKGTL 134

Query: 63  GMAEYLSLMKQTSESMKLAGSPVSFDDLISYVVAGLDAKY 103
            M EYL  MK  S+++KLAGSP+S  DLI   ++GLD++Y
Sbjct: 135 KMEEYLIKMKNLSDNLKLAGSPISTTDLIIQTLSGLDSEY 174

BLAST of Bhi05M001281 vs. TrEMBL
Match: tr|Q0JR31|Q0JR31_ORYSJ (Os01g0123000 protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0123000 PE=2 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 6.9e-13
Identity = 37/97 (38.14%), Postives = 62/97 (63.92%), Query Frame = 0

Query: 9   WLFGSMTPTIASEVVGFSTLGGVWQALDSLFGATSRVPINQLREILQTTRKGTMGMAEYL 68
           +LF S++  I S+V G +T    WQA+  +F + SR  +  +R  L +T+KGTM + EY+
Sbjct: 93  FLFSSLSREILSQVAGATTAAQAWQAISDMFASKSRAGLINMRLALTSTQKGTMSVTEYV 152

Query: 69  SLMKQTSESMKLAGSPVSFDDLISYVVAGLDAKYLPI 106
           + M+  ++ +  AG P+  DDLI+Y++ GLDA + P+
Sbjct: 153 AKMRAIADELAAAGKPIDQDDLIAYIINGLDANFDPV 189

BLAST of Bhi05M001281 vs. TrEMBL
Match: tr|A0A0E0BWA9|A0A0E0BWA9_9ORYZ (Uncharacterized protein OS=Oryza meridionalis OX=40149 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 3.4e-12
Identity = 37/97 (38.14%), Postives = 62/97 (63.92%), Query Frame = 0

Query: 9   WLFGSMTPTIASEVVGFSTLGGVWQALDSLFGATSRVPINQLREILQTTRKGTMGMAEYL 68
           +LF S++  I S+V G +T    WQA+  +F + SR  +  +R  L +T+KGTM + EY+
Sbjct: 93  FLFSSLSREILSQVAGATTAALAWQAISDMFASKSRAGLIIMRLALTSTQKGTMSVTEYV 152

Query: 69  SLMKQTSESMKLAGSPVSFDDLISYVVAGLDAKYLPI 106
           + M+  ++ +  AG P+  DDLI+Y++ GLDA + P+
Sbjct: 153 AKMRAIADELAAAGKPIDQDDLIAYIINGLDADFDPV 189

BLAST of Bhi05M001281 vs. TrEMBL
Match: tr|A5BFR8|A5BFR8_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_012106 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 4.5e-12
Identity = 36/101 (35.64%), Postives = 63/101 (62.38%), Query Frame = 0

Query: 9   WLFGSMTPTIASEVVGFSTLGGVWQALDSLFGATSRVPINQLREILQTTRKGTMGMAEYL 68
           W++ S+TP I ++++G +T    W AL+S+F ++SR  I QLR  LQ+T+KG+M M +Y+
Sbjct: 98  WIYSSLTPGIMAQIIGHNTSHSAWNALESIFSSSSRARIMQLRLELQSTKKGSMSMIDYI 157

Query: 69  SLMKQTSESMKLAGSPVSFDDLISYVVAGLDAKYLPITCTI 110
             +K  ++++   G PVS  D +  ++ GL + Y  +   I
Sbjct: 158 MKIKGAADNLAAIGEPVSEQDQVMNLLGGLGSDYNAVVTAI 198

BLAST of Bhi05M001281 vs. NCBI nr
Match: XP_022157748.1 (uncharacterized protein LOC111024384 isoform X1 [Momordica charantia])

HSP 1 Score: 129.4 bits (324), Expect = 7.4e-27
Identity = 62/102 (60.78%), Postives = 82/102 (80.39%), Query Frame = 0

Query: 9   WLFGSMTPTIASEVVGFSTLGGVWQALDSLFGATSRVPINQLREILQTTRKGTMGMAEYL 68
           WLFGSMTP+IA +VV F +   VW+AL+ L+GATS+  INQLR +LQ T+K ++ M+EYL
Sbjct: 113 WLFGSMTPSIACDVVDFRSSREVWKALEDLYGATSKARINQLRNVLQNTKKNSLKMSEYL 172

Query: 69  SLMKQTSESMKLAGSPVSFDDLISYVVAGLDAKYLPITCTIE 111
            LMKQ SES+KLAG PV+F+ L+S V++GL+A+YLPI C IE
Sbjct: 173 GLMKQASESLKLAGEPVAFNYLMSCVLSGLEAEYLPIVCQIE 214

BLAST of Bhi05M001281 vs. NCBI nr
Match: XP_022157750.1 (uncharacterized protein LOC111024384 isoform X2 [Momordica charantia])

HSP 1 Score: 129.4 bits (324), Expect = 7.4e-27
Identity = 62/102 (60.78%), Postives = 82/102 (80.39%), Query Frame = 0

Query: 9   WLFGSMTPTIASEVVGFSTLGGVWQALDSLFGATSRVPINQLREILQTTRKGTMGMAEYL 68
           WLFGSMTP+IA +VV F +   VW+AL+ L+GATS+  INQLR +LQ T+K ++ M+EYL
Sbjct: 113 WLFGSMTPSIACDVVDFRSSREVWKALEDLYGATSKARINQLRNVLQNTKKNSLKMSEYL 172

Query: 69  SLMKQTSESMKLAGSPVSFDDLISYVVAGLDAKYLPITCTIE 111
            LMKQ SES+KLAG PV+F+ L+S V++GL+A+YLPI C IE
Sbjct: 173 GLMKQASESLKLAGEPVAFNYLMSCVLSGLEAEYLPIVCQIE 214

BLAST of Bhi05M001281 vs. NCBI nr
Match: XP_022143579.1 (ankyrin repeat-containing protein NPR4-like [Momordica charantia])

HSP 1 Score: 122.9 bits (307), Expect = 7.0e-25
Identity = 60/102 (58.82%), Postives = 74/102 (72.55%), Query Frame = 0

Query: 9   WLFGSMTPTIASEVVGFSTLGGVWQALDSLFGATSRVPINQLREILQTTRKGTMGMAEYL 68
           WLFGSMTP+IA++VV   T   VW AL+ LFG+TS+  INQLR  LQ T+KG M M  YL
Sbjct: 105 WLFGSMTPSIAADVVNLQTSNEVWTALEMLFGSTSKARINQLRNSLQNTKKGAMKMTXYL 164

Query: 69  SLMKQTSESMKLAGSPVSFDDLISYVVAGLDAKYLPITCTIE 111
           + MKQTSE +KLAG PV+   L S ++ G +A+YLPI CTIE
Sbjct: 165 AFMKQTSEDLKLAGEPVTLSYLSSCILTGXEAEYLPILCTIE 206

BLAST of Bhi05M001281 vs. NCBI nr
Match: KGN64559.1 (hypothetical protein Csa_1G064810 [Cucumis sativus])

HSP 1 Score: 112.8 bits (281), Expect = 7.2e-22
Identity = 55/95 (57.89%), Postives = 69/95 (72.63%), Query Frame = 0

Query: 16  PTIASEVVGFSTLGGVWQALDSLFGATSRVPINQLREILQTTRKGTMGMAEYLSLMKQTS 75
           P +ASEVV       +W AL+ L+GATS+ P   +  ILQ TRKGTM M EYLS+MKQT 
Sbjct: 158 PLVASEVVNLIMSRELWLALEELYGATSKSPYKSIGIILQNTRKGTMRMTEYLSMMKQTL 217

Query: 76  ESMKLAGSPVSFDDLISYVVAGLDAKYLPITCTIE 111
           E+M+LAGSP+S +DL SYV+ GLD +Y+PI C IE
Sbjct: 218 ENMQLAGSPISHEDLFSYVLVGLDVEYIPIVCDIE 252

BLAST of Bhi05M001281 vs. NCBI nr
Match: XP_022151683.1 (uncharacterized protein LOC111019598 [Momordica charantia])

HSP 1 Score: 95.9 bits (237), Expect = 9.1e-17
Identity = 45/102 (44.12%), Postives = 67/102 (65.69%), Query Frame = 0

Query: 9   WLFGSMTPTIASEVVGFSTLGGVWQALDSLFGATSRVPINQLREILQTTRKGTMGMAEYL 68
           WL+ SM   +A +V+GFST   +W A+  LFG  SR  ++ L+++ Q T KG++ M EYL
Sbjct: 113 WLYNSMAADVAMQVMGFSTSRELWTAVQELFGVQSRAEVDYLKQVFQQTCKGSLQMIEYL 172

Query: 69  SLMKQTSESMKLAGSPVSFDDLISYVVAGLDAKYLPITCTIE 111
            LMK  ++++ LAGS VS  DL+S V+ GLD +Y PI   ++
Sbjct: 173 KLMKSHADNLALAGSSVSVRDLVSQVLTGLDEEYNPIVVAVQ 214

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
AT1G34070.11.3e-0428.72Retrotransposon gag protein (InterPro:IPR005162)[more]
Match NameE-valueIdentityDescription
tr|A0A0A0LUB0|A0A0A0LUB0_CUCSA4.8e-2257.89Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G064810 PE=4 SV=1[more]
tr|A0A2K3MLQ3|A0A2K3MLQ3_TRIPR3.1e-1344.00Glutamate receptor OS=Trifolium pratense OX=57577 GN=L195_g047885 PE=4 SV=1[more]
tr|Q0JR31|Q0JR31_ORYSJ6.9e-1338.14Os01g0123000 protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0123000 PE... [more]
tr|A0A0E0BWA9|A0A0E0BWA9_9ORYZ3.4e-1238.14Uncharacterized protein OS=Oryza meridionalis OX=40149 PE=4 SV=1[more]
tr|A5BFR8|A5BFR8_VITVI4.5e-1235.64Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_012106 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
XP_022157748.17.4e-2760.78uncharacterized protein LOC111024384 isoform X1 [Momordica charantia][more]
XP_022157750.17.4e-2760.78uncharacterized protein LOC111024384 isoform X2 [Momordica charantia][more]
XP_022143579.17.0e-2558.82ankyrin repeat-containing protein NPR4-like [Momordica charantia][more]
KGN64559.17.2e-2257.89hypothetical protein Csa_1G064810 [Cucumis sativus][more]
XP_022151683.19.1e-1744.12uncharacterized protein LOC111019598 [Momordica charantia][more]
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Bhi05G001281Bhi05G001281gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Bhi05M001281.exon1Bhi05M001281.exon1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
cds.Bhi05M001281cds.Bhi05M001281CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Bhi05M001281Bhi05M001281-proteinpolypeptide


Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePFAMPF14223Retrotran_gag_2coord: 7..110
e-value: 2.6E-7
score: 30.2
NoneNo IPR availablePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 9..109
NoneNo IPR availablePANTHERPTHR11439:SF232SUBFAMILY NOT NAMEDcoord: 9..109