Bhi05G001281 (gene) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi05G001281
Type	gene
Organism	Benincasa hispida (Wax gourd)
Description	UBN2_3 domain-containing protein
Location	chr5 : 50672413 .. 50672743 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTGACTACAGATCAAGCAGGTGGTTATTTGGATCAATGACGCCAACCATTGCCTCTGAAGTTGTTGGATTCTCAACATTGGGAGGAGTTTGGCAAGCTCTAGATAGTCTATTTGGTGCAACAAGTAGGGTACCCATCAACCAACTAAGAGAAATTCTTCAAACTACAAGAAAGGGAACTATGGGTATGGCAGAATACTTGTCTTTGATGAAACAGACAAGTGAGAGCATGAAATTGGCTGGTTCACCAGTATCTTTTGACGATTTAATCTCTTATGTTGTAGCAGGTCTTGATGCTAAGTATCTTCCTATTACTTGTACTATTGAAG

mRNA sequence

ATGGGTGACTACAGATCAAGCAGGTGGTTATTTGGATCAATGACGCCAACCATTGCCTCTGAAGTTGTTGGATTCTCAACATTGGGAGGAGTTTGGCAAGCTCTAGATAGTCTATTTGGTGCAACAAGTAGGGTACCCATCAACCAACTAAGAGAAATTCTTCAAACTACAAGAAAGGGAACTATGGGTATGGCAGAATACTTGTCTTTGATGAAACAGACAAGTGAGAGCATGAAATTGGCTGGTTCACCAGTATCTTTTGACGATTTAATCTCTTATGTTGTAGCAGGTCTTGATGCTAAGTATCTTCCTATTACTTGTACTATTGAAG

Coding sequence (CDS)

ATGGGTGACTACAGATCAAGCAGGTGGTTATTTGGATCAATGACGCCAACCATTGCCTCTGAAGTTGTTGGATTCTCAACATTGGGAGGAGTTTGGCAAGCTCTAGATAGTCTATTTGGTGCAACAAGTAGGGTACCCATCAACCAACTAAGAGAAATTCTTCAAACTACAAGAAAGGGAACTATGGGTATGGCAGAATACTTGTCTTTGATGAAACAGACAAGTGAGAGCATGAAATTGGCTGGTTCACCAGTATCTTTTGACGATTTAATCTCTTATGTTGTAGCAGGTCTTGATGCTAAGTATCTTCCTATTACTTGTACTATTGAAG

Protein sequence

MGDYRSSRWLFGSMTPTIASEVVGFSTLGGVWQALDSLFGATSRVPINQLREILQTTRKGTMGMAEYLSLMKQTSESMKLAGSPVSFDDLISYVVAGLDAKYLPITCTIE

Homology

[Close]

BLAST of Bhi05G001281 vs. TAIR10
Match: AT1G34070.1 (Retrotransposon gag protein (InterPro:IPR005162))

HSP 1 Score: 43.1 bits (100), Expect = 1.3e-04
Identity = 27/94 (28.72%), Postives = 48/94 (51.06%), Query Frame = 0


Query: 10  LFGSMTP-TIASEVVGFSTLGGVWQALDSLFGATSRVPINQLREILQTTRKGTMGMAEYL 69
           L+G++TP       V  ST   +W  + + F         +L   L+T   G M +A+Y 
Sbjct: 76  LYGTLTPKQFQGSFVTSSTSRDIWLRIKNQFRNNKDARALRLDSELRTKDIGDMRVADYY 135

Query: 70  SLMKQTSESMKLAGSPVSFDDLISYVVAGLDAKY 103
             MK+ ++S++    PV+  +L+ YV+ GL+ K+
Sbjct: 136 RKMKKLADSLRNVDVPVTDRNLVMYVLNGLNPKF 169

[Close]

BLAST of Bhi05G001281 vs. TrEMBL
Match: tr|A0A0A0LUB0|A0A0A0LUB0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G064810 PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 4.8e-22
Identity = 55/95 (57.89%), Postives = 69/95 (72.63%), Query Frame = 0


Query: 16  PTIASEVVGFSTLGGVWQALDSLFGATSRVPINQLREILQTTRKGTMGMAEYLSLMKQTS 75
           P +ASEVV       +W AL+ L+GATS+ P   +  ILQ TRKGTM M EYLS+MKQT 
Sbjct: 158 PLVASEVVNLIMSRELWLALEELYGATSKSPYKSIGIILQNTRKGTMRMTEYLSMMKQTL 217

Query: 76  ESMKLAGSPVSFDDLISYVVAGLDAKYLPITCTIE 111
           E+M+LAGSP+S +DL SYV+ GLD +Y+PI C IE
Sbjct: 218 ENMQLAGSPISHEDLFSYVLVGLDVEYIPIVCDIE 252

[Close]

BLAST of Bhi05G001281 vs. TrEMBL
Match: tr|A0A2K3MLQ3|A0A2K3MLQ3_TRIPR (Glutamate receptor OS=Trifolium pratense OX=57577 GN=L195_g047885 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 3.1e-13
Identity = 44/100 (44.00%), Postives = 62/100 (62.00%), Query Frame = 0


Query: 3   DYRSSRWLFGSMTPTIASEVVGFSTLGGVWQALDSLFGATSRVPINQLREILQTTRKGTM 62
           D +   WL  SMT  IA++++   T   +W A  SL GA SR  +  L+    +TRKGT+
Sbjct: 75  DQKILGWLLNSMTHDIATQLLHCDTSKELWDAAKSLAGAHSRSRVTLLKSEFHSTRKGTL 134

Query: 63  GMAEYLSLMKQTSESMKLAGSPVSFDDLISYVVAGLDAKY 103
            M EYL  MK  S+++KLAGSP+S  DLI   ++GLD++Y
Sbjct: 135 KMEEYLIKMKNLSDNLKLAGSPISTTDLIIQTLSGLDSEY 174

[Close]

BLAST of Bhi05G001281 vs. TrEMBL
Match: tr|Q0JR31|Q0JR31_ORYSJ (Os01g0123000 protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0123000 PE=2 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 6.9e-13
Identity = 37/97 (38.14%), Postives = 62/97 (63.92%), Query Frame = 0


Query: 9   WLFGSMTPTIASEVVGFSTLGGVWQALDSLFGATSRVPINQLREILQTTRKGTMGMAEYL 68
           +LF S++  I S+V G +T    WQA+  +F + SR  +  +R  L +T+KGTM + EY+
Sbjct: 93  FLFSSLSREILSQVAGATTAAQAWQAISDMFASKSRAGLINMRLALTSTQKGTMSVTEYV 152

Query: 69  SLMKQTSESMKLAGSPVSFDDLISYVVAGLDAKYLPI 106
           + M+  ++ +  AG P+  DDLI+Y++ GLDA + P+
Sbjct: 153 AKMRAIADELAAAGKPIDQDDLIAYIINGLDANFDPV 189

[Close]

BLAST of Bhi05G001281 vs. TrEMBL
Match: tr|A0A0E0BWA9|A0A0E0BWA9_9ORYZ (Uncharacterized protein OS=Oryza meridionalis OX=40149 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 3.4e-12
Identity = 37/97 (38.14%), Postives = 62/97 (63.92%), Query Frame = 0


Query: 9   WLFGSMTPTIASEVVGFSTLGGVWQALDSLFGATSRVPINQLREILQTTRKGTMGMAEYL 68
           +LF S++  I S+V G +T    WQA+  +F + SR  +  +R  L +T+KGTM + EY+
Sbjct: 93  FLFSSLSREILSQVAGATTAALAWQAISDMFASKSRAGLIIMRLALTSTQKGTMSVTEYV 152

Query: 69  SLMKQTSESMKLAGSPVSFDDLISYVVAGLDAKYLPI 106
           + M+  ++ +  AG P+  DDLI+Y++ GLDA + P+
Sbjct: 153 AKMRAIADELAAAGKPIDQDDLIAYIINGLDADFDPV 189

[Close]

BLAST of Bhi05G001281 vs. TrEMBL
Match: tr|A5BFR8|A5BFR8_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_012106 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 4.5e-12
Identity = 36/101 (35.64%), Postives = 63/101 (62.38%), Query Frame = 0


Query: 9   WLFGSMTPTIASEVVGFSTLGGVWQALDSLFGATSRVPINQLREILQTTRKGTMGMAEYL 68
           W++ S+TP I ++++G +T    W AL+S+F ++SR  I QLR  LQ+T+KG+M M +Y+
Sbjct: 98  WIYSSLTPGIMAQIIGHNTSHSAWNALESIFSSSSRARIMQLRLELQSTKKGSMSMIDYI 157

Query: 69  SLMKQTSESMKLAGSPVSFDDLISYVVAGLDAKYLPITCTI 110
             +K  ++++   G PVS  D +  ++ GL + Y  +   I
Sbjct: 158 MKIKGAADNLAAIGEPVSEQDQVMNLLGGLGSDYNAVVTAI 198

[Close]

BLAST of Bhi05G001281 vs. NCBI nr
Match: XP_022157748.1 (uncharacterized protein LOC111024384 isoform X1 [Momordica charantia])

HSP 1 Score: 129.4 bits (324), Expect = 7.4e-27
Identity = 62/102 (60.78%), Postives = 82/102 (80.39%), Query Frame = 0


Query: 9   WLFGSMTPTIASEVVGFSTLGGVWQALDSLFGATSRVPINQLREILQTTRKGTMGMAEYL 68
           WLFGSMTP+IA +VV F +   VW+AL+ L+GATS+  INQLR +LQ T+K ++ M+EYL
Sbjct: 113 WLFGSMTPSIACDVVDFRSSREVWKALEDLYGATSKARINQLRNVLQNTKKNSLKMSEYL 172

Query: 69  SLMKQTSESMKLAGSPVSFDDLISYVVAGLDAKYLPITCTIE 111
            LMKQ SES+KLAG PV+F+ L+S V++GL+A+YLPI C IE
Sbjct: 173 GLMKQASESLKLAGEPVAFNYLMSCVLSGLEAEYLPIVCQIE 214

[Close]

BLAST of Bhi05G001281 vs. NCBI nr
Match: XP_022157750.1 (uncharacterized protein LOC111024384 isoform X2 [Momordica charantia])

HSP 1 Score: 129.4 bits (324), Expect = 7.4e-27
Identity = 62/102 (60.78%), Postives = 82/102 (80.39%), Query Frame = 0


Query: 9   WLFGSMTPTIASEVVGFSTLGGVWQALDSLFGATSRVPINQLREILQTTRKGTMGMAEYL 68
           WLFGSMTP+IA +VV F +   VW+AL+ L+GATS+  INQLR +LQ T+K ++ M+EYL
Sbjct: 113 WLFGSMTPSIACDVVDFRSSREVWKALEDLYGATSKARINQLRNVLQNTKKNSLKMSEYL 172

Query: 69  SLMKQTSESMKLAGSPVSFDDLISYVVAGLDAKYLPITCTIE 111
            LMKQ SES+KLAG PV+F+ L+S V++GL+A+YLPI C IE
Sbjct: 173 GLMKQASESLKLAGEPVAFNYLMSCVLSGLEAEYLPIVCQIE 214

[Close]

BLAST of Bhi05G001281 vs. NCBI nr
Match: XP_022143579.1 (ankyrin repeat-containing protein NPR4-like [Momordica charantia])

HSP 1 Score: 122.9 bits (307), Expect = 7.0e-25
Identity = 60/102 (58.82%), Postives = 74/102 (72.55%), Query Frame = 0


Query: 9   WLFGSMTPTIASEVVGFSTLGGVWQALDSLFGATSRVPINQLREILQTTRKGTMGMAEYL 68
           WLFGSMTP+IA++VV   T   VW AL+ LFG+TS+  INQLR  LQ T+KG M M  YL
Sbjct: 105 WLFGSMTPSIAADVVNLQTSNEVWTALEMLFGSTSKARINQLRNSLQNTKKGAMKMTXYL 164

Query: 69  SLMKQTSESMKLAGSPVSFDDLISYVVAGLDAKYLPITCTIE 111
           + MKQTSE +KLAG PV+   L S ++ G +A+YLPI CTIE
Sbjct: 165 AFMKQTSEDLKLAGEPVTLSYLSSCILTGXEAEYLPILCTIE 206

[Close]

BLAST of Bhi05G001281 vs. NCBI nr
Match: KGN64559.1 (hypothetical protein Csa_1G064810 [Cucumis sativus])

HSP 1 Score: 112.8 bits (281), Expect = 7.2e-22
Identity = 55/95 (57.89%), Postives = 69/95 (72.63%), Query Frame = 0


Query: 16  PTIASEVVGFSTLGGVWQALDSLFGATSRVPINQLREILQTTRKGTMGMAEYLSLMKQTS 75
           P +ASEVV       +W AL+ L+GATS+ P   +  ILQ TRKGTM M EYLS+MKQT 
Sbjct: 158 PLVASEVVNLIMSRELWLALEELYGATSKSPYKSIGIILQNTRKGTMRMTEYLSMMKQTL 217

Query: 76  ESMKLAGSPVSFDDLISYVVAGLDAKYLPITCTIE 111
           E+M+LAGSP+S +DL SYV+ GLD +Y+PI C IE
Sbjct: 218 ENMQLAGSPISHEDLFSYVLVGLDVEYIPIVCDIE 252

[Close]

BLAST of Bhi05G001281 vs. NCBI nr
Match: XP_022151683.1 (uncharacterized protein LOC111019598 [Momordica charantia])

HSP 1 Score: 95.9 bits (237), Expect = 9.1e-17
Identity = 45/102 (44.12%), Postives = 67/102 (65.69%), Query Frame = 0


Query: 9   WLFGSMTPTIASEVVGFSTLGGVWQALDSLFGATSRVPINQLREILQTTRKGTMGMAEYL 68
           WL+ SM   +A +V+GFST   +W A+  LFG  SR  ++ L+++ Q T KG++ M EYL
Sbjct: 113 WLYNSMAADVAMQVMGFSTSRELWTAVQELFGVQSRAEVDYLKQVFQQTCKGSLQMIEYL 172

Query: 69  SLMKQTSESMKLAGSPVSFDDLISYVVAGLDAKYLPITCTIE 111
            LMK  ++++ LAGS VS  DL+S V+ GLD +Y PI   ++
Sbjct: 173 KLMKSHADNLALAGSSVSVRDLVSQVLTGLDEEYNPIVVAVQ 214

The following BLAST results are available for this feature:

BLAST of Bhi05G001281 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Bhi05G001281 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G34070.1	1.3e-04	28.72	Retrotransposon gag protein (InterPro:IPR005162)	[more]

BLAST of Bhi05G001281 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LUB0\|A0A0A0LUB0_CUCSA	4.8e-22	57.89	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G064810 PE=4 SV=1	[more]
tr\|A0A2K3MLQ3\|A0A2K3MLQ3_TRIPR	3.1e-13	44.00	Glutamate receptor OS=Trifolium pratense OX=57577 GN=L195_g047885 PE=4 SV=1	[more]
tr\|Q0JR31\|Q0JR31_ORYSJ	6.9e-13	38.14	Os01g0123000 protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0123000 PE...	[more]
tr\|A0A0E0BWA9\|A0A0E0BWA9_9ORYZ	3.4e-12	38.14	Uncharacterized protein OS=Oryza meridionalis OX=40149 PE=4 SV=1	[more]
tr\|A5BFR8\|A5BFR8_VITVI	4.5e-12	35.64	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_012106 PE=4 SV=1	[more]

BLAST of Bhi05G001281 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022157748.1	7.4e-27	60.78	uncharacterized protein LOC111024384 isoform X1 [Momordica charantia]	[more]
XP_022157750.1	7.4e-27	60.78	uncharacterized protein LOC111024384 isoform X2 [Momordica charantia]	[more]
XP_022143579.1	7.0e-25	58.82	ankyrin repeat-containing protein NPR4-like [Momordica charantia]	[more]
KGN64559.1	7.2e-22	57.89	hypothetical protein Csa_1G064810 [Cucumis sativus]	[more]
XP_022151683.1	9.1e-17	44.12	uncharacterized protein LOC111019598 [Momordica charantia]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi05M001281	Bhi05M001281	mRNA

InterPro

Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 7..110 e-value: 2.6E-7 score: 30.2
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 9..109
None	No IPR available	PANTHER	PTHR11439:SF232	SUBFAMILY NOT NAMED	coord: 9..109

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Bhi05G001281	Wax gourd	wgowgoB070
Bhi05G001281	Cucumber (Gy14) v1	cgywgoB208
Bhi05G001281	Cucumber (Gy14) v1	cgywgoB145
Bhi05G001281	Cucumber (Gy14) v2	cgybwgoB536
Bhi05G001281	Cucumber (Gy14) v2	cgybwgoB641
Bhi05G001281	Cucurbita maxima (Rimu)	cmawgoB0115
Bhi05G001281	Cucurbita maxima (Rimu)	cmawgoB0652
Bhi05G001281	Cucurbita maxima (Rimu)	cmawgoB0678
Bhi05G001281	Cucurbita moschata (Rifu)	cmowgoB0116
Bhi05G001281	Cucurbita moschata (Rifu)	cmowgoB0653
Bhi05G001281	Cucurbita moschata (Rifu)	cmowgoB0674
Bhi05G001281	Cucurbita pepo (Zucchini)	cpewgoB0326
Bhi05G001281	Cucurbita pepo (Zucchini)	cpewgoB0349
Bhi05G001281	Cucurbita pepo (Zucchini)	cpewgoB0852
Bhi05G001281	Wild cucumber (PI 183967)	cpiwgoB566
Bhi05G001281	Wild cucumber (PI 183967)	cpiwgoB681
Bhi05G001281	Cucumber (Chinese Long) v3	cucwgoB579
Bhi05G001281	Cucumber (Chinese Long) v3	cucwgoB695
Bhi05G001281	Cucumber (Chinese Long) v2	cuwgoB561
Bhi05G001281	Cucumber (Chinese Long) v2	cuwgoB670
Bhi05G001281	Bottle gourd (USVL1VR-Ls)	lsiwgoB064
Bhi05G001281	Bottle gourd (USVL1VR-Ls)	lsiwgoB118
Bhi05G001281	Melon (DHL92) v3.6.1	medwgoB108
Bhi05G001281	Melon (DHL92) v3.6.1	medwgoB212
Bhi05G001281	Melon (DHL92) v3.5.1	mewgoB107
Bhi05G001281	Melon (DHL92) v3.5.1	mewgoB212
Bhi05G001281	Watermelon (Charleston Gray)	wcgwgoB266
Bhi05G001281	Watermelon (97103) v2	wgowmbB241
Bhi05G001281	Watermelon (97103) v2	wgowmbB256
Bhi05G001281	Watermelon (97103) v1	wgowmB272
Bhi05G001281	Silver-seed gourd	carwgoB0251
Bhi05G001281	Silver-seed gourd	carwgoB0429
Bhi05G001281	Silver-seed gourd	carwgoB1253