Bhi04M001786 (mRNA) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi04M001786
Type	mRNA
Organism	Benincasa hispida (Wax gourd)
Description	U4/U6 small nuclear ribonucleoprotein Prp3
Location	chr4 : 60585137 .. 60585467 (-)
Sequence length	189

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGGTGTGCTCATGGTGGTCGACCGCGGGTTAGTAAACTTTTTTTCTAAGAATTTTGCCCTAATCCTTCCTGATTTCTTAGGGTTCGTTGTTTATATATCTGTCTCTTATACACATCTAGATGTGTATAAGAGACGATTAGAAAGATGAGGAAGCAAACTTGGGTTGTAGGGGAAGAAGGGAGAGGAAGCGGTTTGAGGATTGGGTAAAGGAAGAAGATAATGGTGGAAATGTTGATGAGAAGCATGTTGAAGTGAATGAATACAAGTCCAAGGGAGACGTCGGGGATGGGAAAGTTCAGTTTGGAGGCACCATTGATGAAAAATAA

mRNA sequence

ATGGATGGTGTGCTCATGGTGGTCGACCGCGGGGGAAGAAGGGAGAGGAAGCGGTTTGAGGATTGGGTAAAGGAAGAAGATAATGGTGGAAATGTTGATGAGAAGCATGTTGAAGTGAATGAATACAAGTCCAAGGGAGACGTCGGGGATGGGAAAGTTCAGTTTGGAGGCACCATTGATGAAAAATAA

Coding sequence (CDS)

ATGGATGGTGTGCTCATGGTGGTCGACCGCGGGGGAAGAAGGGAGAGGAAGCGGTTTGAGGATTGGGTAAAGGAAGAAGATAATGGTGGAAATGTTGATGAGAAGCATGTTGAAGTGAATGAATACAAGTCCAAGGGAGACGTCGGGGATGGGAAAGTTCAGTTTGGAGGCACCATTGATGAAAAATAA

Protein sequence

MDGVLMVVDRGGRRERKRFEDWVKEEDNGGNVDEKHVEVNEYKSKGDVGDGKVQFGGTIDEK

Homology

[Close]

BLAST of Bhi04M001786 vs. TrEMBL
Match: tr|A0A0A0KLQ4|A0A0A0KLQ4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G177130 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 2.4e-15
Identity = 45/51 (88.24%), Postives = 47/51 (92.16%), Query Frame = 0


Query: 12  GRRERKRFEDWVKEEDNGGNVDEKHVEVNEYKSKGDVGDGKVQFGGTIDEK 63
           GRR+RKRFED  KEEDNGGNVDEKH +VNEYKSKGDVGDGKVQFGGT DEK
Sbjct: 215 GRRDRKRFEDRGKEEDNGGNVDEKHGKVNEYKSKGDVGDGKVQFGGTTDEK 265

[Close]

BLAST of Bhi04M001786 vs. TrEMBL
Match: tr|A0A1S3CF39|A0A1S3CF39_CUCME (U4/U6 small nuclear ribonucleoprotein Prp3 OS=Cucumis melo OX=3656 GN=LOC103500170 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 7.1e-15
Identity = 44/50 (88.00%), Postives = 46/50 (92.00%), Query Frame = 0


Query: 13  RRERKRFEDWVKEEDNGGNVDEKHVEVNEYKSKGDVGDGKVQFGGTIDEK 63
           RR+RKRFED VKEEDNGGNVDEKH +V EYKSKGDVGDGKVQFGGT DEK
Sbjct: 216 RRDRKRFEDRVKEEDNGGNVDEKHAKVIEYKSKGDVGDGKVQFGGTTDEK 265

[Close]

BLAST of Bhi04M001786 vs. NCBI nr
Match: XP_004143591.1 (PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp3 [Cucumis sativus] >KGN50493.1 hypothetical protein Csa_5G177130 [Cucumis sativus])

HSP 1 Score: 89.7 bits (221), Expect = 3.7e-15
Identity = 45/51 (88.24%), Postives = 47/51 (92.16%), Query Frame = 0


Query: 12  GRRERKRFEDWVKEEDNGGNVDEKHVEVNEYKSKGDVGDGKVQFGGTIDEK 63
           GRR+RKRFED  KEEDNGGNVDEKH +VNEYKSKGDVGDGKVQFGGT DEK
Sbjct: 215 GRRDRKRFEDRGKEEDNGGNVDEKHGKVNEYKSKGDVGDGKVQFGGTTDEK 265

[Close]

BLAST of Bhi04M001786 vs. NCBI nr
Match: XP_008461606.1 (PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp3 [Cucumis melo])

HSP 1 Score: 88.2 bits (217), Expect = 1.1e-14
Identity = 44/50 (88.00%), Postives = 46/50 (92.00%), Query Frame = 0


Query: 13  RRERKRFEDWVKEEDNGGNVDEKHVEVNEYKSKGDVGDGKVQFGGTIDEK 63
           RR+RKRFED VKEEDNGGNVDEKH +V EYKSKGDVGDGKVQFGGT DEK
Sbjct: 216 RRDRKRFEDRVKEEDNGGNVDEKHAKVIEYKSKGDVGDGKVQFGGTTDEK 265

[Close]

BLAST of Bhi04M001786 vs. NCBI nr
Match: XP_022139030.1 (protein RDM16 isoform X1 [Momordica charantia])

HSP 1 Score: 81.6 bits (200), Expect = 1.0e-12
Identity = 38/49 (77.55%), Postives = 42/49 (85.71%), Query Frame = 0


Query: 12  GRRERKRFEDWVKEEDNGGNVDEKHVEVNEYKSKGDVGDGKVQFGGTID 61
           G  ERKRFEDWV EEDNGGNVDEKH  VN++KSKG+VGDGK+Q GGT D
Sbjct: 224 GXXERKRFEDWVNEEDNGGNVDEKHANVNKHKSKGNVGDGKIQIGGTTD 272

[Close]

BLAST of Bhi04M001786 vs. NCBI nr
Match: XP_022139031.1 (protein RDM16 isoform X2 [Momordica charantia])

HSP 1 Score: 81.6 bits (200), Expect = 1.0e-12
Identity = 38/49 (77.55%), Postives = 42/49 (85.71%), Query Frame = 0


Query: 12  GRRERKRFEDWVKEEDNGGNVDEKHVEVNEYKSKGDVGDGKVQFGGTID 61
           G  ERKRFEDWV EEDNGGNVDEKH  VN++KSKG+VGDGK+Q GGT D
Sbjct: 224 GXXERKRFEDWVNEEDNGGNVDEKHANVNKHKSKGNVGDGKIQIGGTTD 272

The following BLAST results are available for this feature:

BLAST of Bhi04M001786 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Bhi04M001786 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Bhi04M001786 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KLQ4\|A0A0A0KLQ4_CUCSA	2.4e-15	88.24	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G177130 PE=4 SV=1	[more]
tr\|A0A1S3CF39\|A0A1S3CF39_CUCME	7.1e-15	88.00	U4/U6 small nuclear ribonucleoprotein Prp3 OS=Cucumis melo OX=3656 GN=LOC1035001...	[more]

BLAST of Bhi04M001786 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004143591.1	3.7e-15	88.24	PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp3 [Cucumis sativus] >KGN5049...	[more]
XP_008461606.1	1.1e-14	88.00	PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp3 [Cucumis melo]	[more]
XP_022139030.1	1.0e-12	77.55	protein RDM16 isoform X1 [Momordica charantia]	[more]
XP_022139031.1	1.0e-12	77.55	protein RDM16 isoform X2 [Momordica charantia]	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
cellular_component	GO:0046540	U4/U6 x U5 tri-snRNP complex

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Bhi04G001786	Bhi04G001786	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Bhi04M001786.exon2	Bhi04M001786.exon2	exon
Bhi04M001786.exon1	Bhi04M001786.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.Bhi04M001786	cds.Bhi04M001786	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Bhi04M001786	Bhi04M001786-protein	polypeptide