Bhi04G001786 (gene) Wax gourd

Overview
NameBhi04G001786
Typegene
OrganismBenincasa hispida (Wax gourd)
DescriptionU4/U6 small nuclear ribonucleoprotein Prp3
Locationchr4 : 60585137 .. 60585467 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATGGTGTGCTCATGGTGGTCGACCGCGGGTTAGTAAACTTTTTTTCTAAGAATTTTGCCCTAATCCTTCCTGATTTCTTAGGGTTCGTTGTTTATATATCTGTCTCTTATACACATCTAGATGTGTATAAGAGACGATTAGAAAGATGAGGAAGCAAACTTGGGTTGTAGGGGAAGAAGGGAGAGGAAGCGGTTTGAGGATTGGGTAAAGGAAGAAGATAATGGTGGAAATGTTGATGAGAAGCATGTTGAAGTGAATGAATACAAGTCCAAGGGAGACGTCGGGGATGGGAAAGTTCAGTTTGGAGGCACCATTGATGAAAAATAA

mRNA sequence

ATGGATGGTGTGCTCATGGTGGTCGACCGCGGGGGAAGAAGGGAGAGGAAGCGGTTTGAGGATTGGGTAAAGGAAGAAGATAATGGTGGAAATGTTGATGAGAAGCATGTTGAAGTGAATGAATACAAGTCCAAGGGAGACGTCGGGGATGGGAAAGTTCAGTTTGGAGGCACCATTGATGAAAAATAA

Coding sequence (CDS)

ATGGATGGTGTGCTCATGGTGGTCGACCGCGGGGGAAGAAGGGAGAGGAAGCGGTTTGAGGATTGGGTAAAGGAAGAAGATAATGGTGGAAATGTTGATGAGAAGCATGTTGAAGTGAATGAATACAAGTCCAAGGGAGACGTCGGGGATGGGAAAGTTCAGTTTGGAGGCACCATTGATGAAAAATAA

Protein sequence

MDGVLMVVDRGGRRERKRFEDWVKEEDNGGNVDEKHVEVNEYKSKGDVGDGKVQFGGTIDEK
Homology
[Close]
BLAST of Bhi04G001786 vs. TrEMBL
Match: tr|A0A0A0KLQ4|A0A0A0KLQ4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G177130 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 2.4e-15
Identity = 45/51 (88.24%), Postives = 47/51 (92.16%), Query Frame = 0 

Query: 12  GRRERKRFEDWVKEEDNGGNVDEKHVEVNEYKSKGDVGDGKVQFGGTIDEK 63
           GRR+RKRFED  KEEDNGGNVDEKH +VNEYKSKGDVGDGKVQFGGT DEK
Sbjct: 215 GRRDRKRFEDRGKEEDNGGNVDEKHGKVNEYKSKGDVGDGKVQFGGTTDEK 265

[Close]
BLAST of Bhi04G001786 vs. TrEMBL
Match: tr|A0A1S3CF39|A0A1S3CF39_CUCME (U4/U6 small nuclear ribonucleoprotein Prp3 OS=Cucumis melo OX=3656 GN=LOC103500170 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 7.1e-15
Identity = 44/50 (88.00%), Postives = 46/50 (92.00%), Query Frame = 0 

Query: 13  RRERKRFEDWVKEEDNGGNVDEKHVEVNEYKSKGDVGDGKVQFGGTIDEK 63
           RR+RKRFED VKEEDNGGNVDEKH +V EYKSKGDVGDGKVQFGGT DEK
Sbjct: 216 RRDRKRFEDRVKEEDNGGNVDEKHAKVIEYKSKGDVGDGKVQFGGTTDEK 265

[Close]
BLAST of Bhi04G001786 vs. NCBI nr
Match: XP_004143591.1 (PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp3 [Cucumis sativus] >KGN50493.1 hypothetical protein Csa_5G177130 [Cucumis sativus])

HSP 1 Score: 89.7 bits (221), Expect = 3.7e-15
Identity = 45/51 (88.24%), Postives = 47/51 (92.16%), Query Frame = 0 

Query: 12  GRRERKRFEDWVKEEDNGGNVDEKHVEVNEYKSKGDVGDGKVQFGGTIDEK 63
           GRR+RKRFED  KEEDNGGNVDEKH +VNEYKSKGDVGDGKVQFGGT DEK
Sbjct: 215 GRRDRKRFEDRGKEEDNGGNVDEKHGKVNEYKSKGDVGDGKVQFGGTTDEK 265

[Close]
BLAST of Bhi04G001786 vs. NCBI nr
Match: XP_008461606.1 (PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp3 [Cucumis melo])

HSP 1 Score: 88.2 bits (217), Expect = 1.1e-14
Identity = 44/50 (88.00%), Postives = 46/50 (92.00%), Query Frame = 0 

Query: 13  RRERKRFEDWVKEEDNGGNVDEKHVEVNEYKSKGDVGDGKVQFGGTIDEK 63
           RR+RKRFED VKEEDNGGNVDEKH +V EYKSKGDVGDGKVQFGGT DEK
Sbjct: 216 RRDRKRFEDRVKEEDNGGNVDEKHAKVIEYKSKGDVGDGKVQFGGTTDEK 265

[Close]
BLAST of Bhi04G001786 vs. NCBI nr
Match: XP_022139030.1 (protein RDM16 isoform X1 [Momordica charantia])

HSP 1 Score: 81.6 bits (200), Expect = 1.0e-12
Identity = 38/49 (77.55%), Postives = 42/49 (85.71%), Query Frame = 0 

Query: 12  GRRERKRFEDWVKEEDNGGNVDEKHVEVNEYKSKGDVGDGKVQFGGTID 61
           G  ERKRFEDWV EEDNGGNVDEKH  VN++KSKG+VGDGK+Q GGT D
Sbjct: 224 GXXERKRFEDWVNEEDNGGNVDEKHANVNKHKSKGNVGDGKIQIGGTTD 272

[Close]
BLAST of Bhi04G001786 vs. NCBI nr
Match: XP_022139031.1 (protein RDM16 isoform X2 [Momordica charantia])

HSP 1 Score: 81.6 bits (200), Expect = 1.0e-12
Identity = 38/49 (77.55%), Postives = 42/49 (85.71%), Query Frame = 0 

Query: 12  GRRERKRFEDWVKEEDNGGNVDEKHVEVNEYKSKGDVGDGKVQFGGTID 61
           G  ERKRFEDWV EEDNGGNVDEKH  VN++KSKG+VGDGK+Q GGT D
Sbjct: 224 GXXERKRFEDWVNEEDNGGNVDEKHANVNKHKSKGNVGDGKIQIGGTTD 272

The following BLAST results are available for this feature:
BLAST of Bhi04G001786 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Bhi04G001786 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Bhi04G001786 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KLQ4|A0A0A0KLQ4_CUCSA2.4e-1588.24Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G177130 PE=4 SV=1[more]
tr|A0A1S3CF39|A0A1S3CF39_CUCME7.1e-1588.00U4/U6 small nuclear ribonucleoprotein Prp3 OS=Cucumis melo OX=3656 GN=LOC1035001... [more]
BLAST of Bhi04G001786 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004143591.13.7e-1588.24PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp3 [Cucumis sativus] >KGN5049... [more]
XP_008461606.11.1e-1488.00PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp3 [Cucumis melo][more]
XP_022139030.11.0e-1277.55protein RDM16 isoform X1 [Momordica charantia][more]
XP_022139031.11.0e-1277.55protein RDM16 isoform X2 [Momordica charantia][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000398 mRNA splicing, via spliceosome
cellular_component GO:0046540 U4/U6 x U5 tri-snRNP complex
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Bhi04M001786Bhi04M001786mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Bhi04G001786Cucumber (Gy14) v1cgywgoB659
Bhi04G001786Cucumber (Gy14) v2cgybwgoB561
Bhi04G001786Cucurbita moschata (Rifu)cmowgoB0571
Bhi04G001786Cucurbita pepo (Zucchini)cpewgoB0685
Bhi04G001786Wild cucumber (PI 183967)cpiwgoB594
Bhi04G001786Cucumber (Chinese Long) v3cucwgoB609
Bhi04G001786Cucumber (Chinese Long) v2cuwgoB589
Bhi04G001786Bottle gourd (USVL1VR-Ls)lsiwgoB604
Bhi04G001786Melon (DHL92) v3.6.1medwgoB328
Bhi04G001786Melon (DHL92) v3.5.1mewgoB347
Bhi04G001786Watermelon (Charleston Gray)wcgwgoB633
Bhi04G001786Watermelon (97103) v2wgowmbB334