Bhi04M000979 (mRNA) Wax gourd

Overview
NameBhi04M000979
TypemRNA
OrganismBenincasa hispida (Wax gourd)
DescriptionUnknown protein
Locationchr4 : 30085433 .. 30085629 (-)
Sequence length197
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTAATTTGTTGTCTCCCACAAAGGTTGCTCAAGTAGAGATGTTGAAAGCCAGATTTGGTGGTACAATTTTGAAAGCTCAACAAGTACTTTTTCCCAATTCTAATATCGATCATCATAATGTTATTGTGGCTCCAAAGATATGCTCCATACAAGAACGAAAACAAGCTGCAAGAGAAACTCTTGACAAGATTAA

mRNA sequence

ATGACTAATTTGTTGTCTCCCACAAAGGTTGCTCAAGTAGAGATGTTGAAAGCCAGATTTGGTGGTACAATTTTGAAAGCTCAACAAGTACTTTTTCCCAATTCTAATATCGATCATCATAATGTTATTGTGGCTCCAAAGATATGCTCCATACAAGAACGAAAACAAGCTGCAAGAGAAACTCTTGACAAGATTAA

Coding sequence (CDS)

ATGACTAATTTGTTGTCTCCCACAAAGGTTGCTCAAGTAGAGATGTTGAAAGCCAGATTTGGTGGTACAATTTTGAAAGCTCAACAAGTACTTTTTCCCAATTCTAATATCGATCATCATAATGTTATTGTGGCTCCAAAGATATGCTCCATACAAGAACGAAAACAAGCTGCAAGAGAAACTCTTGACAAGATTAA

Protein sequence

MTNLLSPTKVAQVEMLKARFGGTILKAQQVLFPNSNIDHHNVIVAPKICSIQERKQAARETLDKI
Homology
[Close]
BLAST of Bhi04M000979 vs. TrEMBL
Match: tr|A0A0A0KRB6|A0A0A0KRB6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G162640 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 8.0e-09
Identity = 38/65 (58.46%), Postives = 48/65 (73.85%), Query Frame = 0 

Query: 4   LLSPTKVAQVEMLKARFGGTILKAQQVLF-PNSNIDHHNVIV--APKICSIQERKQAARE 63
           +LSP + A+VE+LKA+FG TILKAQQ L   N++ + H  IV   P ICSIQE++QA RE
Sbjct: 42  VLSPRRAARVEVLKAKFGSTILKAQQKLHNSNNDSNKHEYIVGATPNICSIQEQRQALRE 101

Query: 64  TLDKI 66
            LDKI
Sbjct: 102 ALDKI 106

[Close]
BLAST of Bhi04M000979 vs. TrEMBL
Match: tr|A0A0A0KMZ1|A0A0A0KMZ1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G164650 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 1.8e-05
Identity = 33/67 (49.25%), Postives = 47/67 (70.15%), Query Frame = 0 

Query: 4   LLSPTKVAQVEMLKARFGGTILKAQQVLFPNSN----IDHHNVIVAPKICSI-QERKQAA 63
           +LSP + A+VE+LKA+FG TI KAQQ L  ++N     ++  +   PK CSI QE+K+A+
Sbjct: 72  VLSPRRAARVEVLKAKFGSTIWKAQQKLQKSNNDSNKYEYVVIGATPKTCSILQEQKRAS 131

Query: 64  RETLDKI 66
           RE LDK+
Sbjct: 132 REALDKM 138

[Close]
BLAST of Bhi04M000979 vs. NCBI nr
Match: KGN50266.1 (hypothetical protein Csa_5G162640 [Cucumis sativus])

HSP 1 Score: 68.2 bits (165), Expect = 1.2e-08
Identity = 38/65 (58.46%), Postives = 48/65 (73.85%), Query Frame = 0 

Query: 4   LLSPTKVAQVEMLKARFGGTILKAQQVLF-PNSNIDHHNVIV--APKICSIQERKQAARE 63
           +LSP + A+VE+LKA+FG TILKAQQ L   N++ + H  IV   P ICSIQE++QA RE
Sbjct: 42  VLSPRRAARVEVLKAKFGSTILKAQQKLHNSNNDSNKHEYIVGATPNICSIQEQRQALRE 101

Query: 64  TLDKI 66
            LDKI
Sbjct: 102 ALDKI 106

[Close]
BLAST of Bhi04M000979 vs. NCBI nr
Match: KGN50269.1 (hypothetical protein Csa_5G164650 [Cucumis sativus])

HSP 1 Score: 57.0 bits (136), Expect = 2.8e-05
Identity = 33/67 (49.25%), Postives = 47/67 (70.15%), Query Frame = 0 

Query: 4   LLSPTKVAQVEMLKARFGGTILKAQQVLFPNSN----IDHHNVIVAPKICSI-QERKQAA 63
           +LSP + A+VE+LKA+FG TI KAQQ L  ++N     ++  +   PK CSI QE+K+A+
Sbjct: 72  VLSPRRAARVEVLKAKFGSTIWKAQQKLQKSNNDSNKYEYVVIGATPKTCSILQEQKRAS 131

Query: 64  RETLDKI 66
           RE LDK+
Sbjct: 132 REALDKM 138

The following BLAST results are available for this feature:
BLAST of Bhi04M000979 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Bhi04M000979 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Bhi04M000979 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KRB6|A0A0A0KRB6_CUCSA8.0e-0958.46Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G162640 PE=4 SV=1[more]
tr|A0A0A0KMZ1|A0A0A0KMZ1_CUCSA1.8e-0549.25Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G164650 PE=4 SV=1[more]
BLAST of Bhi04M000979 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN50266.11.2e-0858.46hypothetical protein Csa_5G162640 [Cucumis sativus][more]
KGN50269.12.8e-0549.25hypothetical protein Csa_5G164650 [Cucumis sativus][more]
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Bhi04G000979Bhi04G000979gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
cds.Bhi04M000979cds.Bhi04M000979CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Bhi04M000979.exon1Bhi04M000979.exon1exon


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Bhi04M000979Bhi04M000979-proteinpolypeptide