Bhi04G000979 (gene) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi04G000979
Type	gene
Organism	Benincasa hispida (Wax gourd)
Description	Unknown protein
Location	chr4 : 30085433 .. 30085629 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTAATTTGTTGTCTCCCACAAAGGTTGCTCAAGTAGAGATGTTGAAAGCCAGATTTGGTGGTACAATTTTGAAAGCTCAACAAGTACTTTTTCCCAATTCTAATATCGATCATCATAATGTTATTGTGGCTCCAAAGATATGCTCCATACAAGAACGAAAACAAGCTGCAAGAGAAACTCTTGACAAGATTAA

mRNA sequence

ATGACTAATTTGTTGTCTCCCACAAAGGTTGCTCAAGTAGAGATGTTGAAAGCCAGATTTGGTGGTACAATTTTGAAAGCTCAACAAGTACTTTTTCCCAATTCTAATATCGATCATCATAATGTTATTGTGGCTCCAAAGATATGCTCCATACAAGAACGAAAACAAGCTGCAAGAGAAACTCTTGACAAGATTAA

Coding sequence (CDS)

ATGACTAATTTGTTGTCTCCCACAAAGGTTGCTCAAGTAGAGATGTTGAAAGCCAGATTTGGTGGTACAATTTTGAAAGCTCAACAAGTACTTTTTCCCAATTCTAATATCGATCATCATAATGTTATTGTGGCTCCAAAGATATGCTCCATACAAGAACGAAAACAAGCTGCAAGAGAAACTCTTGACAAGATTAA

Protein sequence

MTNLLSPTKVAQVEMLKARFGGTILKAQQVLFPNSNIDHHNVIVAPKICSIQERKQAARETLDKI

Homology

[Close]

BLAST of Bhi04G000979 vs. TrEMBL
Match: tr|A0A0A0KRB6|A0A0A0KRB6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G162640 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 8.0e-09
Identity = 38/65 (58.46%), Postives = 48/65 (73.85%), Query Frame = 0


Query: 4   LLSPTKVAQVEMLKARFGGTILKAQQVLF-PNSNIDHHNVIV--APKICSIQERKQAARE 63
           +LSP + A+VE+LKA+FG TILKAQQ L   N++ + H  IV   P ICSIQE++QA RE
Sbjct: 42  VLSPRRAARVEVLKAKFGSTILKAQQKLHNSNNDSNKHEYIVGATPNICSIQEQRQALRE 101

Query: 64  TLDKI 66
            LDKI
Sbjct: 102 ALDKI 106

[Close]

BLAST of Bhi04G000979 vs. TrEMBL
Match: tr|A0A0A0KMZ1|A0A0A0KMZ1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G164650 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 1.8e-05
Identity = 33/67 (49.25%), Postives = 47/67 (70.15%), Query Frame = 0


Query: 4   LLSPTKVAQVEMLKARFGGTILKAQQVLFPNSN----IDHHNVIVAPKICSI-QERKQAA 63
           +LSP + A+VE+LKA+FG TI KAQQ L  ++N     ++  +   PK CSI QE+K+A+
Sbjct: 72  VLSPRRAARVEVLKAKFGSTIWKAQQKLQKSNNDSNKYEYVVIGATPKTCSILQEQKRAS 131

Query: 64  RETLDKI 66
           RE LDK+
Sbjct: 132 REALDKM 138

[Close]

BLAST of Bhi04G000979 vs. NCBI nr
Match: KGN50266.1 (hypothetical protein Csa_5G162640 [Cucumis sativus])

HSP 1 Score: 68.2 bits (165), Expect = 1.2e-08
Identity = 38/65 (58.46%), Postives = 48/65 (73.85%), Query Frame = 0


Query: 4   LLSPTKVAQVEMLKARFGGTILKAQQVLF-PNSNIDHHNVIV--APKICSIQERKQAARE 63
           +LSP + A+VE+LKA+FG TILKAQQ L   N++ + H  IV   P ICSIQE++QA RE
Sbjct: 42  VLSPRRAARVEVLKAKFGSTILKAQQKLHNSNNDSNKHEYIVGATPNICSIQEQRQALRE 101

Query: 64  TLDKI 66
            LDKI
Sbjct: 102 ALDKI 106

[Close]

BLAST of Bhi04G000979 vs. NCBI nr
Match: KGN50269.1 (hypothetical protein Csa_5G164650 [Cucumis sativus])

HSP 1 Score: 57.0 bits (136), Expect = 2.8e-05
Identity = 33/67 (49.25%), Postives = 47/67 (70.15%), Query Frame = 0


Query: 4   LLSPTKVAQVEMLKARFGGTILKAQQVLFPNSN----IDHHNVIVAPKICSI-QERKQAA 63
           +LSP + A+VE+LKA+FG TI KAQQ L  ++N     ++  +   PK CSI QE+K+A+
Sbjct: 72  VLSPRRAARVEVLKAKFGSTIWKAQQKLQKSNNDSNKYEYVVIGATPKTCSILQEQKRAS 131

Query: 64  RETLDKI 66
           RE LDK+
Sbjct: 132 REALDKM 138

The following BLAST results are available for this feature:

BLAST of Bhi04G000979 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Bhi04G000979 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Bhi04G000979 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KRB6\|A0A0A0KRB6_CUCSA	8.0e-09	58.46	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G162640 PE=4 SV=1	[more]
tr\|A0A0A0KMZ1\|A0A0A0KMZ1_CUCSA	1.8e-05	49.25	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G164650 PE=4 SV=1	[more]

BLAST of Bhi04G000979 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN50266.1	1.2e-08	58.46	hypothetical protein Csa_5G162640 [Cucumis sativus]	[more]
KGN50269.1	2.8e-05	49.25	hypothetical protein Csa_5G164650 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi04M000979	Bhi04M000979	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Bhi04G000979	ClCG08G008960	Watermelon (Charleston Gray)	wcgwgoB619

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Bhi04G000979	Cucumber (Gy14) v1	cgywgoB057
Bhi04G000979	Cucumber (Gy14) v2	cgybwgoB554
Bhi04G000979	Cucurbita maxima (Rimu)	cmawgoB0202
Bhi04G000979	Cucurbita moschata (Rifu)	cmowgoB0198
Bhi04G000979	Cucurbita moschata (Rifu)	cmowgoB0952
Bhi04G000979	Cucurbita pepo (Zucchini)	cpewgoB1036
Bhi04G000979	Wild cucumber (PI 183967)	cpiwgoB587
Bhi04G000979	Cucumber (Chinese Long) v3	cucwgoB601
Bhi04G000979	Cucumber (Chinese Long) v2	cuwgoB582
Bhi04G000979	Silver-seed gourd	carwgoB0168
Bhi04G000979	Silver-seed gourd	carwgoB0262