Bhi04M000871 (mRNA) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi04M000871
Type	mRNA
Organism	Benincasa hispida (Wax gourd)
Description	E3 ubiquitin-protein ligase MBR2-like
Location	chr4 : 26814664 .. 26814841 (-)
Sequence length	155

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GCATTTCGACTTGTTCTTTTCGCTGCGGAGGAGAGTACTCACATGGAGATGAAGTCGGGACGCTGCAGTGCGAGCATACTTACCATGAAGGGTGCATAAACAATGGCTGCGGCTGAAGAACTGGTGCCCCATATGCAAAGCATCTGTGGAGGAACCTGCTTCGGCTTTGCCTTCATAA

mRNA sequence

GCATTTCGACTTGTTCTTTTCGCTGCGGAGGAGAGTACTCACATGGAGATGAAGTCGGGACGCTGCAGGTGCATAAACAATGGCTGCGGCTGAAGAACTGGTGCCCCATATGCAAAGCATCTGTGGAGGAACCTGCTTCGGCTTTGCCTTCATAA

Coding sequence (CDS)

GCATTTCGACTTGTTCTTTTCGCTGCGGAGGAGAGTACTCACATGGAGATGAAGTCGGGACGCTGCAGGTGCATAAACAATGGCTGCGGCTGAAGAACTGGTGCCCCATATGCAAAGCATCTGTGGAGGAACCTGCTTCGGCTTTGCCTTCATAA

Protein sequence

ISTCSFRCGGEYSHGDEVGTLQVHKQWLRLKNWCPICKASVEEPASALPS

Homology

[Close]

BLAST of Bhi04M000871 vs. Swiss-Prot
Match: sp|O49500|MBR2_ARATH (E3 ubiquitin-protein ligase MBR2 OS=Arabidopsis thaliana OX=3702 GN=MBR2 PE=1 SV=1)

HSP 1 Score: 44.3 bits (103), Expect = 4.7e-04
Identity = 21/39 (53.85%), Postives = 25/39 (64.10%), Query Frame = 0


Query: 8   CGGEYSHGDEVGTL----QVH----KQWLRLKNWCPICK 39
           C  EY+ GD++GTL    + H    KQWL LKN CPICK
Sbjct: 622 CQEEYAEGDDLGTLGCGHEFHTACVKQWLMLKNLCPICK 660

[Close]

BLAST of Bhi04M000871 vs. TAIR10
Match: AT5G10650.1 (RING/U-box superfamily protein)

HSP 1 Score: 55.1 bits (131), Expect = 1.5e-08
Identity = 26/51 (50.98%), Postives = 30/51 (58.82%), Query Frame = 0


Query: 4   CSFRCGGEYSHGDEVGTLQVH--------KQWLRLKNWCPICKASVEEPAS 47
           CS  C  EY  GDE+GT+           +QWLR+KNWCPICK S EE  S
Sbjct: 475 CSI-CQEEYVDGDELGTIPCQHMYHVSCVQQWLRMKNWCPICKTSAEEEKS 524

[Close]

BLAST of Bhi04M000871 vs. TAIR10
Match: AT5G24870.1 (RING/U-box superfamily protein)

HSP 1 Score: 54.3 bits (129), Expect = 2.5e-08
Identity = 28/47 (59.57%), Postives = 29/47 (61.70%), Query Frame = 0


Query: 4   CSFRCGGEYSHGDEVGTLQV-HK-------QWLRLKNWCPICKASVE 43
           CS  C  EY  GDEVGTL   HK       QWLR+KNWCPICK S E
Sbjct: 468 CSI-CQEEYVDGDEVGTLPCQHKYHVSCAQQWLRMKNWCPICKTSAE 513

[Close]

BLAST of Bhi04M000871 vs. TAIR10
Match: AT4G31450.1 (RING/U-box superfamily protein)

HSP 1 Score: 49.7 bits (117), Expect = 6.2e-07
Identity = 23/47 (48.94%), Postives = 29/47 (61.70%), Query Frame = 0


Query: 4   CSFRCGGEYSHGDEVGTLQVH--------KQWLRLKNWCPICKASVE 43
           CS  C  EY+ GDEVG L           ++WLR+K+WCPICKA+ E
Sbjct: 448 CSI-CQEEYTIGDEVGRLHCEHTYHVKCVQEWLRIKSWCPICKATAE 493

[Close]

BLAST of Bhi04M000871 vs. TAIR10
Match: AT4G34040.1 (RING/U-box superfamily protein)

HSP 1 Score: 44.3 bits (103), Expect = 2.6e-05
Identity = 21/39 (53.85%), Postives = 25/39 (64.10%), Query Frame = 0


Query: 8   CGGEYSHGDEVGTL----QVH----KQWLRLKNWCPICK 39
           C  EY+ GD++GTL    + H    KQWL LKN CPICK
Sbjct: 622 CQEEYAEGDDLGTLGCGHEFHTACVKQWLMLKNLCPICK 660

[Close]

BLAST of Bhi04M000871 vs. TAIR10
Match: AT5G42940.1 (RING/U-box superfamily protein)

HSP 1 Score: 42.0 bits (97), Expect = 1.3e-04
Identity = 18/41 (43.90%), Postives = 25/41 (60.98%), Query Frame = 0


Query: 8   CGGEYSHGDEVGTL--------QVHKQWLRLKNWCPICKAS 41
           C  EY+ G+++GTL        Q  K+WL+ KN CPICK +
Sbjct: 640 CQEEYTEGEDMGTLECGHEFHSQCIKEWLKQKNLCPICKTT 680

[Close]

BLAST of Bhi04M000871 vs. TrEMBL
Match: tr|A0A1S3BCL3|A0A1S3BCL3_CUCME (dentin sialophosphoprotein-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103488230 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 6.5e-11
Identity = 36/51 (70.59%), Postives = 37/51 (72.55%), Query Frame = 0


Query: 8   CGGEYSHGDEVGTLQVH--------KQWLRLKNWCPICKASVEEPASALPS 51
           C  EY +GDEVGTLQ           QWLRLKNWCPICKASVEEPASALPS
Sbjct: 474 CQEEYLNGDEVGTLQCEHTYHEGCIHQWLRLKNWCPICKASVEEPASALPS 524

[Close]

BLAST of Bhi04M000871 vs. TrEMBL
Match: tr|A0A1S3BBV2|A0A1S3BBV2_CUCME (dentin sialophosphoprotein-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103488230 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 6.5e-11
Identity = 36/51 (70.59%), Postives = 37/51 (72.55%), Query Frame = 0


Query: 8   CGGEYSHGDEVGTLQVH--------KQWLRLKNWCPICKASVEEPASALPS 51
           C  EY +GDEVGTLQ           QWLRLKNWCPICKASVEEPASALPS
Sbjct: 498 CQEEYLNGDEVGTLQCEHTYHEGCIHQWLRLKNWCPICKASVEEPASALPS 548

[Close]

BLAST of Bhi04M000871 vs. TrEMBL
Match: tr|A0A0A0LPX3|A0A0A0LPX3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G378010 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 6.5e-11
Identity = 36/51 (70.59%), Postives = 37/51 (72.55%), Query Frame = 0


Query: 8   CGGEYSHGDEVGTLQVH--------KQWLRLKNWCPICKASVEEPASALPS 51
           C  EY +GDEVGTLQ           QWLRLKNWCPICKASVEEPASALPS
Sbjct: 528 CQEEYLNGDEVGTLQCEHTYHEGCIHQWLRLKNWCPICKASVEEPASALPS 578

[Close]

BLAST of Bhi04M000871 vs. TrEMBL
Match: tr|A0A1U8J033|A0A1U8J033_GOSHI (E3 ubiquitin-protein ligase MBR2-like isoform X1 OS=Gossypium hirsutum OX=3635 GN=LOC107902017 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.3e-06
Identity = 30/55 (54.55%), Postives = 35/55 (63.64%), Query Frame = 0


Query: 4   CSFRCGGEYSHGDEVGTLQVH--------KQWLRLKNWCPICKASVEEPASALPS 51
           CS  C  EY +GDEVG LQ          +QWLR+KNWCPICKAS E+P + L S
Sbjct: 496 CSI-CQEEYVNGDEVGRLQCEHRYHVACVQQWLRVKNWCPICKASAEKPHNLLHS 549

[Close]

BLAST of Bhi04M000871 vs. TrEMBL
Match: tr|A0A1U8PU27|A0A1U8PU27_GOSHI (E3 ubiquitin-protein ligase MBR1-like isoform X1 OS=Gossypium hirsutum OX=3635 GN=LOC107962701 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.3e-06
Identity = 30/55 (54.55%), Postives = 35/55 (63.64%), Query Frame = 0


Query: 4   CSFRCGGEYSHGDEVGTLQVH--------KQWLRLKNWCPICKASVEEPASALPS 51
           CS  C  EY +GDEVG LQ          +QWLR+KNWCPICKAS E+P + L S
Sbjct: 346 CSI-CQEEYVNGDEVGRLQCEHRYHVACVQQWLRVKNWCPICKASAEKPHNLLHS 399

[Close]

BLAST of Bhi04M000871 vs. NCBI nr
Match: XP_022131773.1 (dentin sialophosphoprotein-like isoform X2 [Momordica charantia])

HSP 1 Score: 77.8 bits (190), Expect = 1.2e-11
Identity = 37/51 (72.55%), Postives = 39/51 (76.47%), Query Frame = 0


Query: 8   CGGEYSHGDEVGTLQVH--------KQWLRLKNWCPICKASVEEPASALPS 51
           C  EYS+GDEVGTLQ          +QWLRLKNWCPICKASVEEPASALPS
Sbjct: 483 CQEEYSNGDEVGTLQCEHTYHEGCIQQWLRLKNWCPICKASVEEPASALPS 533

[Close]

BLAST of Bhi04M000871 vs. NCBI nr
Match: XP_022131776.1 (uncharacterized RING finger protein ECU07_0330-like isoform X5 [Momordica charantia])

HSP 1 Score: 77.8 bits (190), Expect = 1.2e-11
Identity = 37/51 (72.55%), Postives = 39/51 (76.47%), Query Frame = 0


Query: 8   CGGEYSHGDEVGTLQVH--------KQWLRLKNWCPICKASVEEPASALPS 51
           C  EYS+GDEVGTLQ          +QWLRLKNWCPICKASVEEPASALPS
Sbjct: 467 CQEEYSNGDEVGTLQCEHTYHEGCIQQWLRLKNWCPICKASVEEPASALPS 517

[Close]

BLAST of Bhi04M000871 vs. NCBI nr
Match: XP_022131775.1 (probable E3 ubiquitin-protein ligase RHG1A isoform X4 [Momordica charantia])

HSP 1 Score: 77.8 bits (190), Expect = 1.2e-11
Identity = 37/51 (72.55%), Postives = 39/51 (76.47%), Query Frame = 0


Query: 8   CGGEYSHGDEVGTLQVH--------KQWLRLKNWCPICKASVEEPASALPS 51
           C  EYS+GDEVGTLQ          +QWLRLKNWCPICKASVEEPASALPS
Sbjct: 476 CQEEYSNGDEVGTLQCEHTYHEGCIQQWLRLKNWCPICKASVEEPASALPS 526

[Close]

BLAST of Bhi04M000871 vs. NCBI nr
Match: XP_022131770.1 (dentin sialophosphoprotein-like isoform X1 [Momordica charantia] >XP_022131771.1 dentin sialophosphoprotein-like isoform X1 [Momordica charantia] >XP_022131772.1 dentin sialophosphoprotein-like isoform X1 [Momordica charantia])

HSP 1 Score: 77.8 bits (190), Expect = 1.2e-11
Identity = 37/51 (72.55%), Postives = 39/51 (76.47%), Query Frame = 0


Query: 8   CGGEYSHGDEVGTLQVH--------KQWLRLKNWCPICKASVEEPASALPS 51
           C  EYS+GDEVGTLQ          +QWLRLKNWCPICKASVEEPASALPS
Sbjct: 500 CQEEYSNGDEVGTLQCEHTYHEGCIQQWLRLKNWCPICKASVEEPASALPS 550

[Close]

BLAST of Bhi04M000871 vs. NCBI nr
Match: XP_022131774.1 (probable E3 ubiquitin-protein ligase RHG1A isoform X3 [Momordica charantia])

HSP 1 Score: 77.8 bits (190), Expect = 1.2e-11
Identity = 37/51 (72.55%), Postives = 39/51 (76.47%), Query Frame = 0


Query: 8   CGGEYSHGDEVGTLQVH--------KQWLRLKNWCPICKASVEEPASALPS 51
           C  EYS+GDEVGTLQ          +QWLRLKNWCPICKASVEEPASALPS
Sbjct: 481 CQEEYSNGDEVGTLQCEHTYHEGCIQQWLRLKNWCPICKASVEEPASALPS 531

The following BLAST results are available for this feature:

BLAST of Bhi04M000871 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|O49500\|MBR2_ARATH	4.7e-04	53.85	E3 ubiquitin-protein ligase MBR2 OS=Arabidopsis thaliana OX=3702 GN=MBR2 PE=1 SV...	[more]

BLAST of Bhi04M000871 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G10650.1	1.5e-08	50.98	RING/U-box superfamily protein	[more]
AT5G24870.1	2.5e-08	59.57	RING/U-box superfamily protein	[more]
AT4G31450.1	6.2e-07	48.94	RING/U-box superfamily protein	[more]
AT4G34040.1	2.6e-05	53.85	RING/U-box superfamily protein	[more]
AT5G42940.1	1.3e-04	43.90	RING/U-box superfamily protein	[more]

BLAST of Bhi04M000871 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BCL3\|A0A1S3BCL3_CUCME	6.5e-11	70.59	dentin sialophosphoprotein-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC1034882...	[more]
tr\|A0A1S3BBV2\|A0A1S3BBV2_CUCME	6.5e-11	70.59	dentin sialophosphoprotein-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC1034882...	[more]
tr\|A0A0A0LPX3\|A0A0A0LPX3_CUCSA	6.5e-11	70.59	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G378010 PE=4 SV=1	[more]
tr\|A0A1U8J033\|A0A1U8J033_GOSHI	1.3e-06	54.55	E3 ubiquitin-protein ligase MBR2-like isoform X1 OS=Gossypium hirsutum OX=3635 G...	[more]
tr\|A0A1U8PU27\|A0A1U8PU27_GOSHI	1.3e-06	54.55	E3 ubiquitin-protein ligase MBR1-like isoform X1 OS=Gossypium hirsutum OX=3635 G...	[more]

BLAST of Bhi04M000871 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022131773.1	1.2e-11	72.55	dentin sialophosphoprotein-like isoform X2 [Momordica charantia]	[more]
XP_022131776.1	1.2e-11	72.55	uncharacterized RING finger protein ECU07_0330-like isoform X5 [Momordica charan...	[more]
XP_022131775.1	1.2e-11	72.55	probable E3 ubiquitin-protein ligase RHG1A isoform X4 [Momordica charantia]	[more]
XP_022131770.1	1.2e-11	72.55	dentin sialophosphoprotein-like isoform X1 [Momordica charantia] >XP_022131771.1...	[more]
XP_022131774.1	1.2e-11	72.55	probable E3 ubiquitin-protein ligase RHG1A isoform X3 [Momordica charantia]	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane
molecular_function	GO:0061630	ubiquitin protein ligase activity

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Bhi04G000871	Bhi04G000871	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Bhi04M000871.exon2	Bhi04M000871.exon2	exon
Bhi04M000871.exon1	Bhi04M000871.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.Bhi04M000871	cds.Bhi04M000871	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Bhi04M000871	Bhi04M000871-protein	polypeptide