Bhi04G000871 (gene) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi04G000871
Type	gene
Organism	Benincasa hispida (Wax gourd)
Description	E3 ubiquitin-protein ligase MBR2-like
Location	chr4 : 26814664 .. 26814841 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GCATTTCGACTTGTTCTTTTCGCTGCGGAGGAGAGTACTCACATGGAGATGAAGTCGGGACGCTGCAGTGCGAGCATACTTACCATGAAGGGTGCATAAACAATGGCTGCGGCTGAAGAACTGGTGCCCCATATGCAAAGCATCTGTGGAGGAACCTGCTTCGGCTTTGCCTTCATAA

mRNA sequence

GCATTTCGACTTGTTCTTTTCGCTGCGGAGGAGAGTACTCACATGGAGATGAAGTCGGGACGCTGCAGGTGCATAAACAATGGCTGCGGCTGAAGAACTGGTGCCCCATATGCAAAGCATCTGTGGAGGAACCTGCTTCGGCTTTGCCTTCATAA

Coding sequence (CDS)

GCATTTCGACTTGTTCTTTTCGCTGCGGAGGAGAGTACTCACATGGAGATGAAGTCGGGACGCTGCAGGTGCATAAACAATGGCTGCGGCTGAAGAACTGGTGCCCCATATGCAAAGCATCTGTGGAGGAACCTGCTTCGGCTTTGCCTTCATAA

Protein sequence

ISTCSFRCGGEYSHGDEVGTLQVHKQWLRLKNWCPICKASVEEPASALPS

Homology

[Close]

BLAST of Bhi04G000871 vs. Swiss-Prot
Match: sp|O49500|MBR2_ARATH (E3 ubiquitin-protein ligase MBR2 OS=Arabidopsis thaliana OX=3702 GN=MBR2 PE=1 SV=1)

HSP 1 Score: 44.3 bits (103), Expect = 4.7e-04
Identity = 21/39 (53.85%), Postives = 25/39 (64.10%), Query Frame = 0


Query: 8   CGGEYSHGDEVGTL----QVH----KQWLRLKNWCPICK 39
           C  EY+ GD++GTL    + H    KQWL LKN CPICK
Sbjct: 622 CQEEYAEGDDLGTLGCGHEFHTACVKQWLMLKNLCPICK 660

[Close]

BLAST of Bhi04G000871 vs. TAIR10
Match: AT5G10650.1 (RING/U-box superfamily protein)

HSP 1 Score: 55.1 bits (131), Expect = 1.5e-08
Identity = 26/51 (50.98%), Postives = 30/51 (58.82%), Query Frame = 0


Query: 4   CSFRCGGEYSHGDEVGTLQVH--------KQWLRLKNWCPICKASVEEPAS 47
           CS  C  EY  GDE+GT+           +QWLR+KNWCPICK S EE  S
Sbjct: 475 CSI-CQEEYVDGDELGTIPCQHMYHVSCVQQWLRMKNWCPICKTSAEEEKS 524

[Close]

BLAST of Bhi04G000871 vs. TAIR10
Match: AT5G24870.1 (RING/U-box superfamily protein)

HSP 1 Score: 54.3 bits (129), Expect = 2.5e-08
Identity = 28/47 (59.57%), Postives = 29/47 (61.70%), Query Frame = 0


Query: 4   CSFRCGGEYSHGDEVGTLQV-HK-------QWLRLKNWCPICKASVE 43
           CS  C  EY  GDEVGTL   HK       QWLR+KNWCPICK S E
Sbjct: 468 CSI-CQEEYVDGDEVGTLPCQHKYHVSCAQQWLRMKNWCPICKTSAE 513

[Close]

BLAST of Bhi04G000871 vs. TAIR10
Match: AT4G31450.1 (RING/U-box superfamily protein)

HSP 1 Score: 49.7 bits (117), Expect = 6.2e-07
Identity = 23/47 (48.94%), Postives = 29/47 (61.70%), Query Frame = 0


Query: 4   CSFRCGGEYSHGDEVGTLQVH--------KQWLRLKNWCPICKASVE 43
           CS  C  EY+ GDEVG L           ++WLR+K+WCPICKA+ E
Sbjct: 448 CSI-CQEEYTIGDEVGRLHCEHTYHVKCVQEWLRIKSWCPICKATAE 493

[Close]

BLAST of Bhi04G000871 vs. TAIR10
Match: AT4G34040.1 (RING/U-box superfamily protein)

HSP 1 Score: 44.3 bits (103), Expect = 2.6e-05
Identity = 21/39 (53.85%), Postives = 25/39 (64.10%), Query Frame = 0


Query: 8   CGGEYSHGDEVGTL----QVH----KQWLRLKNWCPICK 39
           C  EY+ GD++GTL    + H    KQWL LKN CPICK
Sbjct: 622 CQEEYAEGDDLGTLGCGHEFHTACVKQWLMLKNLCPICK 660

[Close]

BLAST of Bhi04G000871 vs. TAIR10
Match: AT5G42940.1 (RING/U-box superfamily protein)

HSP 1 Score: 42.0 bits (97), Expect = 1.3e-04
Identity = 18/41 (43.90%), Postives = 25/41 (60.98%), Query Frame = 0


Query: 8   CGGEYSHGDEVGTL--------QVHKQWLRLKNWCPICKAS 41
           C  EY+ G+++GTL        Q  K+WL+ KN CPICK +
Sbjct: 640 CQEEYTEGEDMGTLECGHEFHSQCIKEWLKQKNLCPICKTT 680

[Close]

BLAST of Bhi04G000871 vs. TrEMBL
Match: tr|A0A1S3BCL3|A0A1S3BCL3_CUCME (dentin sialophosphoprotein-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103488230 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 6.5e-11
Identity = 36/51 (70.59%), Postives = 37/51 (72.55%), Query Frame = 0


Query: 8   CGGEYSHGDEVGTLQVH--------KQWLRLKNWCPICKASVEEPASALPS 51
           C  EY +GDEVGTLQ           QWLRLKNWCPICKASVEEPASALPS
Sbjct: 474 CQEEYLNGDEVGTLQCEHTYHEGCIHQWLRLKNWCPICKASVEEPASALPS 524

[Close]

BLAST of Bhi04G000871 vs. TrEMBL
Match: tr|A0A1S3BBV2|A0A1S3BBV2_CUCME (dentin sialophosphoprotein-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103488230 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 6.5e-11
Identity = 36/51 (70.59%), Postives = 37/51 (72.55%), Query Frame = 0


Query: 8   CGGEYSHGDEVGTLQVH--------KQWLRLKNWCPICKASVEEPASALPS 51
           C  EY +GDEVGTLQ           QWLRLKNWCPICKASVEEPASALPS
Sbjct: 498 CQEEYLNGDEVGTLQCEHTYHEGCIHQWLRLKNWCPICKASVEEPASALPS 548

[Close]

BLAST of Bhi04G000871 vs. TrEMBL
Match: tr|A0A0A0LPX3|A0A0A0LPX3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G378010 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 6.5e-11
Identity = 36/51 (70.59%), Postives = 37/51 (72.55%), Query Frame = 0


Query: 8   CGGEYSHGDEVGTLQVH--------KQWLRLKNWCPICKASVEEPASALPS 51
           C  EY +GDEVGTLQ           QWLRLKNWCPICKASVEEPASALPS
Sbjct: 528 CQEEYLNGDEVGTLQCEHTYHEGCIHQWLRLKNWCPICKASVEEPASALPS 578

[Close]

BLAST of Bhi04G000871 vs. TrEMBL
Match: tr|A0A1U8J033|A0A1U8J033_GOSHI (E3 ubiquitin-protein ligase MBR2-like isoform X1 OS=Gossypium hirsutum OX=3635 GN=LOC107902017 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.3e-06
Identity = 30/55 (54.55%), Postives = 35/55 (63.64%), Query Frame = 0


Query: 4   CSFRCGGEYSHGDEVGTLQVH--------KQWLRLKNWCPICKASVEEPASALPS 51
           CS  C  EY +GDEVG LQ          +QWLR+KNWCPICKAS E+P + L S
Sbjct: 496 CSI-CQEEYVNGDEVGRLQCEHRYHVACVQQWLRVKNWCPICKASAEKPHNLLHS 549

[Close]

BLAST of Bhi04G000871 vs. TrEMBL
Match: tr|A0A1U8PU27|A0A1U8PU27_GOSHI (E3 ubiquitin-protein ligase MBR1-like isoform X1 OS=Gossypium hirsutum OX=3635 GN=LOC107962701 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.3e-06
Identity = 30/55 (54.55%), Postives = 35/55 (63.64%), Query Frame = 0


Query: 4   CSFRCGGEYSHGDEVGTLQVH--------KQWLRLKNWCPICKASVEEPASALPS 51
           CS  C  EY +GDEVG LQ          +QWLR+KNWCPICKAS E+P + L S
Sbjct: 346 CSI-CQEEYVNGDEVGRLQCEHRYHVACVQQWLRVKNWCPICKASAEKPHNLLHS 399

[Close]

BLAST of Bhi04G000871 vs. NCBI nr
Match: XP_022131773.1 (dentin sialophosphoprotein-like isoform X2 [Momordica charantia])

HSP 1 Score: 77.8 bits (190), Expect = 1.2e-11
Identity = 37/51 (72.55%), Postives = 39/51 (76.47%), Query Frame = 0


Query: 8   CGGEYSHGDEVGTLQVH--------KQWLRLKNWCPICKASVEEPASALPS 51
           C  EYS+GDEVGTLQ          +QWLRLKNWCPICKASVEEPASALPS
Sbjct: 483 CQEEYSNGDEVGTLQCEHTYHEGCIQQWLRLKNWCPICKASVEEPASALPS 533

[Close]

BLAST of Bhi04G000871 vs. NCBI nr
Match: XP_022131776.1 (uncharacterized RING finger protein ECU07_0330-like isoform X5 [Momordica charantia])

HSP 1 Score: 77.8 bits (190), Expect = 1.2e-11
Identity = 37/51 (72.55%), Postives = 39/51 (76.47%), Query Frame = 0


Query: 8   CGGEYSHGDEVGTLQVH--------KQWLRLKNWCPICKASVEEPASALPS 51
           C  EYS+GDEVGTLQ          +QWLRLKNWCPICKASVEEPASALPS
Sbjct: 467 CQEEYSNGDEVGTLQCEHTYHEGCIQQWLRLKNWCPICKASVEEPASALPS 517

[Close]

BLAST of Bhi04G000871 vs. NCBI nr
Match: XP_022131775.1 (probable E3 ubiquitin-protein ligase RHG1A isoform X4 [Momordica charantia])

HSP 1 Score: 77.8 bits (190), Expect = 1.2e-11
Identity = 37/51 (72.55%), Postives = 39/51 (76.47%), Query Frame = 0


Query: 8   CGGEYSHGDEVGTLQVH--------KQWLRLKNWCPICKASVEEPASALPS 51
           C  EYS+GDEVGTLQ          +QWLRLKNWCPICKASVEEPASALPS
Sbjct: 476 CQEEYSNGDEVGTLQCEHTYHEGCIQQWLRLKNWCPICKASVEEPASALPS 526

[Close]

BLAST of Bhi04G000871 vs. NCBI nr
Match: XP_022131770.1 (dentin sialophosphoprotein-like isoform X1 [Momordica charantia] >XP_022131771.1 dentin sialophosphoprotein-like isoform X1 [Momordica charantia] >XP_022131772.1 dentin sialophosphoprotein-like isoform X1 [Momordica charantia])

HSP 1 Score: 77.8 bits (190), Expect = 1.2e-11
Identity = 37/51 (72.55%), Postives = 39/51 (76.47%), Query Frame = 0


Query: 8   CGGEYSHGDEVGTLQVH--------KQWLRLKNWCPICKASVEEPASALPS 51
           C  EYS+GDEVGTLQ          +QWLRLKNWCPICKASVEEPASALPS
Sbjct: 500 CQEEYSNGDEVGTLQCEHTYHEGCIQQWLRLKNWCPICKASVEEPASALPS 550

[Close]

BLAST of Bhi04G000871 vs. NCBI nr
Match: XP_022131774.1 (probable E3 ubiquitin-protein ligase RHG1A isoform X3 [Momordica charantia])

HSP 1 Score: 77.8 bits (190), Expect = 1.2e-11
Identity = 37/51 (72.55%), Postives = 39/51 (76.47%), Query Frame = 0


Query: 8   CGGEYSHGDEVGTLQVH--------KQWLRLKNWCPICKASVEEPASALPS 51
           C  EYS+GDEVGTLQ          +QWLRLKNWCPICKASVEEPASALPS
Sbjct: 481 CQEEYSNGDEVGTLQCEHTYHEGCIQQWLRLKNWCPICKASVEEPASALPS 531

The following BLAST results are available for this feature:

BLAST of Bhi04G000871 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|O49500\|MBR2_ARATH	4.7e-04	53.85	E3 ubiquitin-protein ligase MBR2 OS=Arabidopsis thaliana OX=3702 GN=MBR2 PE=1 SV...	[more]

BLAST of Bhi04G000871 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G10650.1	1.5e-08	50.98	RING/U-box superfamily protein	[more]
AT5G24870.1	2.5e-08	59.57	RING/U-box superfamily protein	[more]
AT4G31450.1	6.2e-07	48.94	RING/U-box superfamily protein	[more]
AT4G34040.1	2.6e-05	53.85	RING/U-box superfamily protein	[more]
AT5G42940.1	1.3e-04	43.90	RING/U-box superfamily protein	[more]

BLAST of Bhi04G000871 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BCL3\|A0A1S3BCL3_CUCME	6.5e-11	70.59	dentin sialophosphoprotein-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC1034882...	[more]
tr\|A0A1S3BBV2\|A0A1S3BBV2_CUCME	6.5e-11	70.59	dentin sialophosphoprotein-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC1034882...	[more]
tr\|A0A0A0LPX3\|A0A0A0LPX3_CUCSA	6.5e-11	70.59	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G378010 PE=4 SV=1	[more]
tr\|A0A1U8J033\|A0A1U8J033_GOSHI	1.3e-06	54.55	E3 ubiquitin-protein ligase MBR2-like isoform X1 OS=Gossypium hirsutum OX=3635 G...	[more]
tr\|A0A1U8PU27\|A0A1U8PU27_GOSHI	1.3e-06	54.55	E3 ubiquitin-protein ligase MBR1-like isoform X1 OS=Gossypium hirsutum OX=3635 G...	[more]

BLAST of Bhi04G000871 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022131773.1	1.2e-11	72.55	dentin sialophosphoprotein-like isoform X2 [Momordica charantia]	[more]
XP_022131776.1	1.2e-11	72.55	uncharacterized RING finger protein ECU07_0330-like isoform X5 [Momordica charan...	[more]
XP_022131775.1	1.2e-11	72.55	probable E3 ubiquitin-protein ligase RHG1A isoform X4 [Momordica charantia]	[more]
XP_022131770.1	1.2e-11	72.55	dentin sialophosphoprotein-like isoform X1 [Momordica charantia] >XP_022131771.1...	[more]
XP_022131774.1	1.2e-11	72.55	probable E3 ubiquitin-protein ligase RHG1A isoform X3 [Momordica charantia]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016020	membrane
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0061630	ubiquitin protein ligase activity
molecular_function	GO:0005515	protein binding
molecular_function	GO:0008270	zinc ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi04M000871	Bhi04M000871	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Bhi04G000871	Lsi08G011280	Bottle gourd (USVL1VR-Ls)	lsiwgoB603
Bhi04G000871	Cp4.1LG11g05420	Cucurbita pepo (Zucchini)	cpewgoB0144
Bhi04G000871	Cla022258	Watermelon (97103) v1	wgowmB310

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Bhi04G000871	Bottle gourd (USVL1VR-Ls)	lsiwgoB358
Bhi04G000871	Melon (DHL92) v3.6.1	medwgoB322
Bhi04G000871	Melon (DHL92) v3.6.1	medwgoB413
Bhi04G000871	Melon (DHL92) v3.5.1	mewgoB324
Bhi04G000871	Melon (DHL92) v3.5.1	mewgoB411
Bhi04G000871	Watermelon (Charleston Gray)	wcgwgoB625
Bhi04G000871	Watermelon (97103) v2	wgowmbB304
Bhi04G000871	Watermelon (97103) v2	wgowmbB326
Bhi04G000871	Watermelon (97103) v1	wgowmB332
Bhi04G000871	Silver-seed gourd	carwgoB0069
Bhi04G000871	Silver-seed gourd	carwgoB0661
Bhi04G000871	Silver-seed gourd	carwgoB0748
Bhi04G000871	Silver-seed gourd	carwgoB1144
Bhi04G000871	Silver-seed gourd	carwgoB1145
Bhi04G000871	Wax gourd	wgowgoB090
Bhi04G000871	Cucumber (Gy14) v1	cgywgoB316
Bhi04G000871	Cucumber (Gy14) v1	cgywgoB628
Bhi04G000871	Cucumber (Gy14) v2	cgybwgoB158
Bhi04G000871	Cucumber (Gy14) v2	cgybwgoB302
Bhi04G000871	Cucurbita maxima (Rimu)	cmawgoB0015
Bhi04G000871	Cucurbita maxima (Rimu)	cmawgoB0200
Bhi04G000871	Cucurbita maxima (Rimu)	cmawgoB0569
Bhi04G000871	Cucurbita maxima (Rimu)	cmawgoB0946
Bhi04G000871	Cucurbita moschata (Rifu)	cmowgoB0006
Bhi04G000871	Cucurbita moschata (Rifu)	cmowgoB0195
Bhi04G000871	Cucurbita moschata (Rifu)	cmowgoB0565
Bhi04G000871	Cucurbita moschata (Rifu)	cmowgoB0947
Bhi04G000871	Cucurbita pepo (Zucchini)	cpewgoB0688
Bhi04G000871	Cucurbita pepo (Zucchini)	cpewgoB0977
Bhi04G000871	Cucurbita pepo (Zucchini)	cpewgoB1035
Bhi04G000871	Wild cucumber (PI 183967)	cpiwgoB160
Bhi04G000871	Wild cucumber (PI 183967)	cpiwgoB314
Bhi04G000871	Cucumber (Chinese Long) v3	cucwgoB170
Bhi04G000871	Cucumber (Chinese Long) v3	cucwgoB319
Bhi04G000871	Cucumber (Chinese Long) v2	cuwgoB163
Bhi04G000871	Cucumber (Chinese Long) v2	cuwgoB312