Bhi04M000327 (mRNA) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi04M000327
Type	mRNA
Organism	Benincasa hispida (Wax gourd)
Description	Glutamate receptor
Location	chr4 : 8575398 .. 8575661 (-)
Sequence length	264

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGACAATGTCAAGGTCCCAACCATCGTTTTTAGACATTGAAACCTTGAAGCTCCAAAATGCGACAGTGGGATGCAACAACGGCTCTGCCATGAAGAGAGCTCTATCAGACGTCATGTCGTTCCACCCACAGAATGTCAAAGAGATATCATCCGTGGATCAGTTCCCAAACGCCTTTGAAAGTAGAGACATTCAGGCGGCTTTCATGTCGGCTCCCCATGCAAAAGTCTTCCTCGCTAAACACTGTAAAGACTACACCAAA

mRNA sequence

ATGATGACAATGTCAAGGTCCCAACCATCGTTTTTAGACATTGAAACCTTGAAGCTCCAAAATGCGACAGTGGGATGCAACAACGGCTCTGCCATGAAGAGAGCTCTATCAGACGTCATGTCGTTCCACCCACAGAATGTCAAAGAGATATCATCCGTGGATCAGTTCCCAAACGCCTTTGAAAGTAGAGACATTCAGGCGGCTTTCATGTCGGCTCCCCATGCAAAAGTCTTCCTCGCTAAACACTGTAAAGACTACACCAAA

Coding sequence (CDS)

ATGATGACAATGTCAAGGTCCCAACCATCGTTTTTAGACATTGAAACCTTGAAGCTCCAAAATGCGACAGTGGGATGCAACAACGGCTCTGCCATGAAGAGAGCTCTATCAGACGTCATGTCGTTCCACCCACAGAATGTCAAAGAGATATCATCCGTGGATCAGTTCCCAAACGCCTTTGAAAGTAGAGACATTCAGGCGGCTTTCATGTCGGCTCCCCATGCAAAAGTCTTCCTCGCTAAACACTGTAAAGACTACACCAAA

Protein sequence

MMTMSRSQPSFLDIETLKLQNATVGCNNGSAMKRALSDVMSFHPQNVKEISSVDQFPNAFESRDIQAAFMSAPHAKVFLAKHCKDYTK

Homology

[Close]

BLAST of Bhi04M000327 vs. TrEMBL
Match: tr|A0A0A0LL89|A0A0A0LL89_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G357260 PE=3 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 2.0e-23
Identity = 58/88 (65.91%), Postives = 67/88 (76.14%), Query Frame = 0


Query: 1    MMTMSRSQPSFLDIETLKLQNATVGCNNGSAMKRALSDVMSFHPQNVKEISSVDQFPNAF 60
            MMT+SRSQP FLDIETLKL+NATVGCN  S M R L+ V+    + +K+I SVD FP+A 
Sbjct: 1297 MMTISRSQPWFLDIETLKLKNATVGCNKNSVMVRFLTQVLLIPQEKIKQIPSVDMFPDAL 1356

Query: 61   ESRDIQAAFMSAPHAKVFLAKHCKDYTK 89
            E  +IQAAF S  HAKVFLAKHCK YTK
Sbjct: 1357 EKGEIQAAFFSGAHAKVFLAKHCKQYTK 1384

[Close]

BLAST of Bhi04M000327 vs. TrEMBL
Match: tr|A0A1S3BBH6|A0A1S3BBH6_CUCME (Glutamate receptor OS=Cucumis melo OX=3656 GN=LOC103487888 PE=3 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 5.9e-23
Identity = 58/88 (65.91%), Postives = 67/88 (76.14%), Query Frame = 0


Query: 1   MMTMSRSQPSFLDIETLKLQNATVGCNNGSAMKRALSDVMSFHPQNVKEISSVDQFPNAF 60
           MMT+SRSQP FLDIETLKL+NATVGCN  S M R L+ V+    + +K+I SVD FP+A 
Sbjct: 654 MMTISRSQPWFLDIETLKLKNATVGCNKNSVMVRFLTQVLLIPQEKIKQIPSVDMFPDAL 713

Query: 61  ESRDIQAAFMSAPHAKVFLAKHCKDYTK 89
           E  +IQAAF S  HAKVFLAKHCK YTK
Sbjct: 714 EKGEIQAAFFSGAHAKVFLAKHCKLYTK 741

[Close]

BLAST of Bhi04M000327 vs. TrEMBL
Match: tr|A0A251RC34|A0A251RC34_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica OX=3760 GN=PRUPE_1G434800 PE=3 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 3.2e-21
Identity = 52/86 (60.47%), Postives = 65/86 (75.58%), Query Frame = 0


Query: 1    MMTMSRSQPSFLDIETLKLQNATVGCNNGSAMKRALSDVMSFHPQNVKEISSVDQFPNAF 60
            MMT++R QPS LD+ETLK  NATVGCN  S + R + +V+ F P+N K I+S+  +PNAF
Sbjct: 1239 MMTVTRVQPSALDVETLKRTNATVGCNGNSFIVRYVINVLEFKPENTKRIASISDYPNAF 1298

Query: 61   ESRDIQAAFMSAPHAKVFLAKHCKDY 87
            E +DI AAF  APHAKVFLAK+CK Y
Sbjct: 1299 ERKDIAAAFFVAPHAKVFLAKYCKGY 1324

[Close]

BLAST of Bhi04M000327 vs. TrEMBL
Match: tr|M5XHH0|M5XHH0_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica OX=3760 GN=PRUPE_ppa020816mg PE=3 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 3.2e-21
Identity = 52/86 (60.47%), Postives = 65/86 (75.58%), Query Frame = 0


Query: 1   MMTMSRSQPSFLDIETLKLQNATVGCNNGSAMKRALSDVMSFHPQNVKEISSVDQFPNAF 60
           MMT++R QPS LD+ETLK  NATVGCN  S + R + +V+ F P+N K I+S+  +PNAF
Sbjct: 576 MMTVTRVQPSALDVETLKRTNATVGCNGNSFIVRYVINVLEFKPENTKRIASISDYPNAF 635

Query: 61  ESRDIQAAFMSAPHAKVFLAKHCKDY 87
           E +DI AAF  APHAKVFLAK+CK Y
Sbjct: 636 ERKDIAAAFFVAPHAKVFLAKYCKGY 661

[Close]

BLAST of Bhi04M000327 vs. TrEMBL
Match: tr|A0A2P6Q0I9|A0A2P6Q0I9_ROSCH (Glutamate receptor OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr6g0308011 PE=3 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 4.2e-21
Identity = 52/88 (59.09%), Postives = 67/88 (76.14%), Query Frame = 0


Query: 1   MMTMSRSQPSFLDIETLKLQNATVGCNNGSAMKRALSDVMSFHPQNVKEISSVDQFPNAF 60
           MMT+SR QPS L++ETLK +N TVGCN  S + R L +V++F P+N+K ISS+  +P AF
Sbjct: 653 MMTISRVQPSVLNVETLKKENGTVGCNGNSFIIRYLINVLAFRPENIKRISSISDYPKAF 712

Query: 61  ESRDIQAAFMSAPHAKVFLAKHCKDYTK 89
           ++ DIQAAF  APHAKVFLA +CK Y K
Sbjct: 713 QNGDIQAAFFVAPHAKVFLACYCKGYMK 740

[Close]

BLAST of Bhi04M000327 vs. NCBI nr
Match: XP_022997326.1 (LOW QUALITY PROTEIN: glutamate receptor 2.7-like [Cucurbita maxima])

HSP 1 Score: 147.9 bits (372), Expect = 1.6e-32
Identity = 73/88 (82.95%), Postives = 77/88 (87.50%), Query Frame = 0


Query: 1   MMTMSRSQPSFLDIETLKLQNATVGCNNGSAMKRALSDVMSFHPQNVKEISSVDQFPNAF 60
           MMT+SRSQPS  DIETLKLQNATVGCN GS MKRALS+VM FH +N+KEI SVD FPNA 
Sbjct: 645 MMTISRSQPSXFDIETLKLQNATVGCNKGSVMKRALSEVMQFHVENIKEIPSVDLFPNAL 704

Query: 61  ESRDIQAAFMSAPHAKVFLAKHCKDYTK 89
           ES DIQAAFMSAPHAKVFLAKHCK YTK
Sbjct: 705 ESGDIQAAFMSAPHAKVFLAKHCKGYTK 732

[Close]

BLAST of Bhi04M000327 vs. NCBI nr
Match: XP_022144166.1 (glutamate receptor 2.6-like isoform X2 [Momordica charantia])

HSP 1 Score: 127.1 bits (318), Expect = 3.0e-26
Identity = 62/88 (70.45%), Postives = 71/88 (80.68%), Query Frame = 0


Query: 1   MMTMSRSQPSFLDIETLKLQNATVGCNNGSAMKRALSDVMSFHPQNVKEISSVDQFPNAF 60
           MMT+SR QPSFLDIETLKL+NATVGCNNGS M R LS V+SF   N+K+IS VD+FP A 
Sbjct: 664 MMTISRYQPSFLDIETLKLKNATVGCNNGSVMVRFLSQVLSFPVGNIKQISGVDRFPEAL 723

Query: 61  ESRDIQAAFMSAPHAKVFLAKHCKDYTK 89
           E  +IQAAF S PHA+VFL KHCK YT+
Sbjct: 724 EKEEIQAAFFSGPHAEVFLTKHCKYYTR 751

[Close]

BLAST of Bhi04M000327 vs. NCBI nr
Match: XP_022144165.1 (glutamate receptor 2.6-like isoform X1 [Momordica charantia])

HSP 1 Score: 127.1 bits (318), Expect = 3.0e-26
Identity = 62/88 (70.45%), Postives = 71/88 (80.68%), Query Frame = 0


Query: 1   MMTMSRSQPSFLDIETLKLQNATVGCNNGSAMKRALSDVMSFHPQNVKEISSVDQFPNAF 60
           MMT+SR QPSFLDIETLKL+NATVGCNNGS M R LS V+SF   N+K+IS VD+FP A 
Sbjct: 664 MMTISRYQPSFLDIETLKLKNATVGCNNGSVMVRFLSQVLSFPVGNIKQISGVDRFPEAL 723

Query: 61  ESRDIQAAFMSAPHAKVFLAKHCKDYTK 89
           E  +IQAAF S PHA+VFL KHCK YT+
Sbjct: 724 EKEEIQAAFFSGPHAEVFLTKHCKYYTR 751

[Close]

BLAST of Bhi04M000327 vs. NCBI nr
Match: KGN62503.1 (hypothetical protein Csa_2G357260 [Cucumis sativus])

HSP 1 Score: 117.1 bits (292), Expect = 3.1e-23
Identity = 58/88 (65.91%), Postives = 67/88 (76.14%), Query Frame = 0


Query: 1    MMTMSRSQPSFLDIETLKLQNATVGCNNGSAMKRALSDVMSFHPQNVKEISSVDQFPNAF 60
            MMT+SRSQP FLDIETLKL+NATVGCN  S M R L+ V+    + +K+I SVD FP+A 
Sbjct: 1297 MMTISRSQPWFLDIETLKLKNATVGCNKNSVMVRFLTQVLLIPQEKIKQIPSVDMFPDAL 1356

Query: 61   ESRDIQAAFMSAPHAKVFLAKHCKDYTK 89
            E  +IQAAF S  HAKVFLAKHCK YTK
Sbjct: 1357 EKGEIQAAFFSGAHAKVFLAKHCKQYTK 1384

[Close]

BLAST of Bhi04M000327 vs. NCBI nr
Match: XP_011650187.1 (PREDICTED: glutamate receptor 2.6-like [Cucumis sativus])

HSP 1 Score: 117.1 bits (292), Expect = 3.1e-23
Identity = 58/88 (65.91%), Postives = 67/88 (76.14%), Query Frame = 0


Query: 1   MMTMSRSQPSFLDIETLKLQNATVGCNNGSAMKRALSDVMSFHPQNVKEISSVDQFPNAF 60
           MMT+SRSQP FLDIETLKL+NATVGCN  S M R L+ V+    + +K+I SVD FP+A 
Sbjct: 532 MMTISRSQPWFLDIETLKLKNATVGCNKNSVMVRFLTQVLLIPQEKIKQIPSVDMFPDAL 591

Query: 61  ESRDIQAAFMSAPHAKVFLAKHCKDYTK 89
           E  +IQAAF S  HAKVFLAKHCK YTK
Sbjct: 592 EKGEIQAAFFSGAHAKVFLAKHCKQYTK 619

The following BLAST results are available for this feature:

BLAST of Bhi04M000327 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Bhi04M000327 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Bhi04M000327 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LL89\|A0A0A0LL89_CUCSA	2.0e-23	65.91	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G357260 PE=3 SV=1	[more]
tr\|A0A1S3BBH6\|A0A1S3BBH6_CUCME	5.9e-23	65.91	Glutamate receptor OS=Cucumis melo OX=3656 GN=LOC103487888 PE=3 SV=1	[more]
tr\|A0A251RC34\|A0A251RC34_PRUPE	3.2e-21	60.47	Uncharacterized protein (Fragment) OS=Prunus persica OX=3760 GN=PRUPE_1G434800 P...	[more]
tr\|M5XHH0\|M5XHH0_PRUPE	3.2e-21	60.47	Uncharacterized protein (Fragment) OS=Prunus persica OX=3760 GN=PRUPE_ppa020816m...	[more]
tr\|A0A2P6Q0I9\|A0A2P6Q0I9_ROSCH	4.2e-21	59.09	Glutamate receptor OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr6g0308011 PE=3 SV=1	[more]

BLAST of Bhi04M000327 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022997326.1	1.6e-32	82.95	LOW QUALITY PROTEIN: glutamate receptor 2.7-like [Cucurbita maxima]	[more]
XP_022144166.1	3.0e-26	70.45	glutamate receptor 2.6-like isoform X2 [Momordica charantia]	[more]
XP_022144165.1	3.0e-26	70.45	glutamate receptor 2.6-like isoform X1 [Momordica charantia]	[more]
KGN62503.1	3.1e-23	65.91	hypothetical protein Csa_2G357260 [Cucumis sativus]	[more]
XP_011650187.1	3.1e-23	65.91	PREDICTED: glutamate receptor 2.6-like [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006811	ion transport
cellular_component	GO:0005886	plasma membrane

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Bhi04G000327	Bhi04G000327	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.Bhi04M000327	cds.Bhi04M000327	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Bhi04M000327.exon1	Bhi04M000327.exon1	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Bhi04M000327	Bhi04M000327-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	G3DSA:3.40.190.10		coord: 5..88 e-value: 1.4E-6 score: 30.1
None	No IPR available	PANTHER	PTHR43891:SF16	SUBFAMILY NOT NAMED	coord: 1..88
None	No IPR available	PANTHER	PTHR43891	FAMILY NOT NAMED	coord: 1..88
None	No IPR available	SUPERFAMILY	SSF53850	Periplasmic binding protein-like II	coord: 6..86