Bhi04G000327 (gene) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi04G000327
Type	gene
Organism	Benincasa hispida (Wax gourd)
Description	Glutamate receptor
Location	chr4 : 8575398 .. 8575661 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGACAATGTCAAGGTCCCAACCATCGTTTTTAGACATTGAAACCTTGAAGCTCCAAAATGCGACAGTGGGATGCAACAACGGCTCTGCCATGAAGAGAGCTCTATCAGACGTCATGTCGTTCCACCCACAGAATGTCAAAGAGATATCATCCGTGGATCAGTTCCCAAACGCCTTTGAAAGTAGAGACATTCAGGCGGCTTTCATGTCGGCTCCCCATGCAAAAGTCTTCCTCGCTAAACACTGTAAAGACTACACCAAA

mRNA sequence

ATGATGACAATGTCAAGGTCCCAACCATCGTTTTTAGACATTGAAACCTTGAAGCTCCAAAATGCGACAGTGGGATGCAACAACGGCTCTGCCATGAAGAGAGCTCTATCAGACGTCATGTCGTTCCACCCACAGAATGTCAAAGAGATATCATCCGTGGATCAGTTCCCAAACGCCTTTGAAAGTAGAGACATTCAGGCGGCTTTCATGTCGGCTCCCCATGCAAAAGTCTTCCTCGCTAAACACTGTAAAGACTACACCAAA

Coding sequence (CDS)

ATGATGACAATGTCAAGGTCCCAACCATCGTTTTTAGACATTGAAACCTTGAAGCTCCAAAATGCGACAGTGGGATGCAACAACGGCTCTGCCATGAAGAGAGCTCTATCAGACGTCATGTCGTTCCACCCACAGAATGTCAAAGAGATATCATCCGTGGATCAGTTCCCAAACGCCTTTGAAAGTAGAGACATTCAGGCGGCTTTCATGTCGGCTCCCCATGCAAAAGTCTTCCTCGCTAAACACTGTAAAGACTACACCAAA

Protein sequence

MMTMSRSQPSFLDIETLKLQNATVGCNNGSAMKRALSDVMSFHPQNVKEISSVDQFPNAFESRDIQAAFMSAPHAKVFLAKHCKDYTK

Homology

[Close]

BLAST of Bhi04G000327 vs. TrEMBL
Match: tr|A0A0A0LL89|A0A0A0LL89_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G357260 PE=3 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 2.0e-23
Identity = 58/88 (65.91%), Postives = 67/88 (76.14%), Query Frame = 0


Query: 1    MMTMSRSQPSFLDIETLKLQNATVGCNNGSAMKRALSDVMSFHPQNVKEISSVDQFPNAF 60
            MMT+SRSQP FLDIETLKL+NATVGCN  S M R L+ V+    + +K+I SVD FP+A 
Sbjct: 1297 MMTISRSQPWFLDIETLKLKNATVGCNKNSVMVRFLTQVLLIPQEKIKQIPSVDMFPDAL 1356

Query: 61   ESRDIQAAFMSAPHAKVFLAKHCKDYTK 89
            E  +IQAAF S  HAKVFLAKHCK YTK
Sbjct: 1357 EKGEIQAAFFSGAHAKVFLAKHCKQYTK 1384

[Close]

BLAST of Bhi04G000327 vs. TrEMBL
Match: tr|A0A1S3BBH6|A0A1S3BBH6_CUCME (Glutamate receptor OS=Cucumis melo OX=3656 GN=LOC103487888 PE=3 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 5.9e-23
Identity = 58/88 (65.91%), Postives = 67/88 (76.14%), Query Frame = 0


Query: 1   MMTMSRSQPSFLDIETLKLQNATVGCNNGSAMKRALSDVMSFHPQNVKEISSVDQFPNAF 60
           MMT+SRSQP FLDIETLKL+NATVGCN  S M R L+ V+    + +K+I SVD FP+A 
Sbjct: 654 MMTISRSQPWFLDIETLKLKNATVGCNKNSVMVRFLTQVLLIPQEKIKQIPSVDMFPDAL 713

Query: 61  ESRDIQAAFMSAPHAKVFLAKHCKDYTK 89
           E  +IQAAF S  HAKVFLAKHCK YTK
Sbjct: 714 EKGEIQAAFFSGAHAKVFLAKHCKLYTK 741

[Close]

BLAST of Bhi04G000327 vs. TrEMBL
Match: tr|A0A251RC34|A0A251RC34_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica OX=3760 GN=PRUPE_1G434800 PE=3 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 3.2e-21
Identity = 52/86 (60.47%), Postives = 65/86 (75.58%), Query Frame = 0


Query: 1    MMTMSRSQPSFLDIETLKLQNATVGCNNGSAMKRALSDVMSFHPQNVKEISSVDQFPNAF 60
            MMT++R QPS LD+ETLK  NATVGCN  S + R + +V+ F P+N K I+S+  +PNAF
Sbjct: 1239 MMTVTRVQPSALDVETLKRTNATVGCNGNSFIVRYVINVLEFKPENTKRIASISDYPNAF 1298

Query: 61   ESRDIQAAFMSAPHAKVFLAKHCKDY 87
            E +DI AAF  APHAKVFLAK+CK Y
Sbjct: 1299 ERKDIAAAFFVAPHAKVFLAKYCKGY 1324

[Close]

BLAST of Bhi04G000327 vs. TrEMBL
Match: tr|M5XHH0|M5XHH0_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica OX=3760 GN=PRUPE_ppa020816mg PE=3 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 3.2e-21
Identity = 52/86 (60.47%), Postives = 65/86 (75.58%), Query Frame = 0


Query: 1   MMTMSRSQPSFLDIETLKLQNATVGCNNGSAMKRALSDVMSFHPQNVKEISSVDQFPNAF 60
           MMT++R QPS LD+ETLK  NATVGCN  S + R + +V+ F P+N K I+S+  +PNAF
Sbjct: 576 MMTVTRVQPSALDVETLKRTNATVGCNGNSFIVRYVINVLEFKPENTKRIASISDYPNAF 635

Query: 61  ESRDIQAAFMSAPHAKVFLAKHCKDY 87
           E +DI AAF  APHAKVFLAK+CK Y
Sbjct: 636 ERKDIAAAFFVAPHAKVFLAKYCKGY 661

[Close]

BLAST of Bhi04G000327 vs. TrEMBL
Match: tr|A0A2P6Q0I9|A0A2P6Q0I9_ROSCH (Glutamate receptor OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr6g0308011 PE=3 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 4.2e-21
Identity = 52/88 (59.09%), Postives = 67/88 (76.14%), Query Frame = 0


Query: 1   MMTMSRSQPSFLDIETLKLQNATVGCNNGSAMKRALSDVMSFHPQNVKEISSVDQFPNAF 60
           MMT+SR QPS L++ETLK +N TVGCN  S + R L +V++F P+N+K ISS+  +P AF
Sbjct: 653 MMTISRVQPSVLNVETLKKENGTVGCNGNSFIIRYLINVLAFRPENIKRISSISDYPKAF 712

Query: 61  ESRDIQAAFMSAPHAKVFLAKHCKDYTK 89
           ++ DIQAAF  APHAKVFLA +CK Y K
Sbjct: 713 QNGDIQAAFFVAPHAKVFLACYCKGYMK 740

[Close]

BLAST of Bhi04G000327 vs. NCBI nr
Match: XP_022997326.1 (LOW QUALITY PROTEIN: glutamate receptor 2.7-like [Cucurbita maxima])

HSP 1 Score: 147.9 bits (372), Expect = 1.6e-32
Identity = 73/88 (82.95%), Postives = 77/88 (87.50%), Query Frame = 0


Query: 1   MMTMSRSQPSFLDIETLKLQNATVGCNNGSAMKRALSDVMSFHPQNVKEISSVDQFPNAF 60
           MMT+SRSQPS  DIETLKLQNATVGCN GS MKRALS+VM FH +N+KEI SVD FPNA 
Sbjct: 645 MMTISRSQPSXFDIETLKLQNATVGCNKGSVMKRALSEVMQFHVENIKEIPSVDLFPNAL 704

Query: 61  ESRDIQAAFMSAPHAKVFLAKHCKDYTK 89
           ES DIQAAFMSAPHAKVFLAKHCK YTK
Sbjct: 705 ESGDIQAAFMSAPHAKVFLAKHCKGYTK 732

[Close]

BLAST of Bhi04G000327 vs. NCBI nr
Match: XP_022144166.1 (glutamate receptor 2.6-like isoform X2 [Momordica charantia])

HSP 1 Score: 127.1 bits (318), Expect = 3.0e-26
Identity = 62/88 (70.45%), Postives = 71/88 (80.68%), Query Frame = 0


Query: 1   MMTMSRSQPSFLDIETLKLQNATVGCNNGSAMKRALSDVMSFHPQNVKEISSVDQFPNAF 60
           MMT+SR QPSFLDIETLKL+NATVGCNNGS M R LS V+SF   N+K+IS VD+FP A 
Sbjct: 664 MMTISRYQPSFLDIETLKLKNATVGCNNGSVMVRFLSQVLSFPVGNIKQISGVDRFPEAL 723

Query: 61  ESRDIQAAFMSAPHAKVFLAKHCKDYTK 89
           E  +IQAAF S PHA+VFL KHCK YT+
Sbjct: 724 EKEEIQAAFFSGPHAEVFLTKHCKYYTR 751

[Close]

BLAST of Bhi04G000327 vs. NCBI nr
Match: XP_022144165.1 (glutamate receptor 2.6-like isoform X1 [Momordica charantia])

HSP 1 Score: 127.1 bits (318), Expect = 3.0e-26
Identity = 62/88 (70.45%), Postives = 71/88 (80.68%), Query Frame = 0


Query: 1   MMTMSRSQPSFLDIETLKLQNATVGCNNGSAMKRALSDVMSFHPQNVKEISSVDQFPNAF 60
           MMT+SR QPSFLDIETLKL+NATVGCNNGS M R LS V+SF   N+K+IS VD+FP A 
Sbjct: 664 MMTISRYQPSFLDIETLKLKNATVGCNNGSVMVRFLSQVLSFPVGNIKQISGVDRFPEAL 723

Query: 61  ESRDIQAAFMSAPHAKVFLAKHCKDYTK 89
           E  +IQAAF S PHA+VFL KHCK YT+
Sbjct: 724 EKEEIQAAFFSGPHAEVFLTKHCKYYTR 751

[Close]

BLAST of Bhi04G000327 vs. NCBI nr
Match: KGN62503.1 (hypothetical protein Csa_2G357260 [Cucumis sativus])

HSP 1 Score: 117.1 bits (292), Expect = 3.1e-23
Identity = 58/88 (65.91%), Postives = 67/88 (76.14%), Query Frame = 0


Query: 1    MMTMSRSQPSFLDIETLKLQNATVGCNNGSAMKRALSDVMSFHPQNVKEISSVDQFPNAF 60
            MMT+SRSQP FLDIETLKL+NATVGCN  S M R L+ V+    + +K+I SVD FP+A 
Sbjct: 1297 MMTISRSQPWFLDIETLKLKNATVGCNKNSVMVRFLTQVLLIPQEKIKQIPSVDMFPDAL 1356

Query: 61   ESRDIQAAFMSAPHAKVFLAKHCKDYTK 89
            E  +IQAAF S  HAKVFLAKHCK YTK
Sbjct: 1357 EKGEIQAAFFSGAHAKVFLAKHCKQYTK 1384

[Close]

BLAST of Bhi04G000327 vs. NCBI nr
Match: XP_011650187.1 (PREDICTED: glutamate receptor 2.6-like [Cucumis sativus])

HSP 1 Score: 117.1 bits (292), Expect = 3.1e-23
Identity = 58/88 (65.91%), Postives = 67/88 (76.14%), Query Frame = 0


Query: 1   MMTMSRSQPSFLDIETLKLQNATVGCNNGSAMKRALSDVMSFHPQNVKEISSVDQFPNAF 60
           MMT+SRSQP FLDIETLKL+NATVGCN  S M R L+ V+    + +K+I SVD FP+A 
Sbjct: 532 MMTISRSQPWFLDIETLKLKNATVGCNKNSVMVRFLTQVLLIPQEKIKQIPSVDMFPDAL 591

Query: 61  ESRDIQAAFMSAPHAKVFLAKHCKDYTK 89
           E  +IQAAF S  HAKVFLAKHCK YTK
Sbjct: 592 EKGEIQAAFFSGAHAKVFLAKHCKQYTK 619

The following BLAST results are available for this feature:

BLAST of Bhi04G000327 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Bhi04G000327 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Bhi04G000327 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LL89\|A0A0A0LL89_CUCSA	2.0e-23	65.91	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G357260 PE=3 SV=1	[more]
tr\|A0A1S3BBH6\|A0A1S3BBH6_CUCME	5.9e-23	65.91	Glutamate receptor OS=Cucumis melo OX=3656 GN=LOC103487888 PE=3 SV=1	[more]
tr\|A0A251RC34\|A0A251RC34_PRUPE	3.2e-21	60.47	Uncharacterized protein (Fragment) OS=Prunus persica OX=3760 GN=PRUPE_1G434800 P...	[more]
tr\|M5XHH0\|M5XHH0_PRUPE	3.2e-21	60.47	Uncharacterized protein (Fragment) OS=Prunus persica OX=3760 GN=PRUPE_ppa020816m...	[more]
tr\|A0A2P6Q0I9\|A0A2P6Q0I9_ROSCH	4.2e-21	59.09	Glutamate receptor OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr6g0308011 PE=3 SV=1	[more]

BLAST of Bhi04G000327 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022997326.1	1.6e-32	82.95	LOW QUALITY PROTEIN: glutamate receptor 2.7-like [Cucurbita maxima]	[more]
XP_022144166.1	3.0e-26	70.45	glutamate receptor 2.6-like isoform X2 [Momordica charantia]	[more]
XP_022144165.1	3.0e-26	70.45	glutamate receptor 2.6-like isoform X1 [Momordica charantia]	[more]
KGN62503.1	3.1e-23	65.91	hypothetical protein Csa_2G357260 [Cucumis sativus]	[more]
XP_011650187.1	3.1e-23	65.91	PREDICTED: glutamate receptor 2.6-like [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006811	ion transport
cellular_component	GO:0005886	plasma membrane

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi04M000327	Bhi04M000327	mRNA

InterPro

Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	G3DSA:3.40.190.10		coord: 5..88 e-value: 1.4E-6 score: 30.1
None	No IPR available	PANTHER	PTHR43891:SF16	SUBFAMILY NOT NAMED	coord: 1..88
None	No IPR available	PANTHER	PTHR43891	FAMILY NOT NAMED	coord: 1..88
None	No IPR available	SUPERFAMILY	SSF53850	Periplasmic binding protein-like II	coord: 6..86

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Bhi04G000327	Wax gourd	wgowgoB096
Bhi04G000327	Cucumber (Gy14) v1	cgywgoB452
Bhi04G000327	Cucumber (Gy14) v1	cgywgoB702
Bhi04G000327	Cucumber (Gy14) v1	cgywgoB784
Bhi04G000327	Cucumber (Gy14) v2	cgybwgoB157
Bhi04G000327	Cucumber (Gy14) v2	cgybwgoB368
Bhi04G000327	Cucumber (Gy14) v2	cgybwgoB649
Bhi04G000327	Cucurbita maxima (Rimu)	cmawgoB0014
Bhi04G000327	Cucurbita maxima (Rimu)	cmawgoB0129
Bhi04G000327	Cucurbita maxima (Rimu)	cmawgoB0194
Bhi04G000327	Cucurbita maxima (Rimu)	cmawgoB0576
Bhi04G000327	Cucurbita maxima (Rimu)	cmawgoB0664
Bhi04G000327	Cucurbita maxima (Rimu)	cmawgoB0943
Bhi04G000327	Cucurbita moschata (Rifu)	cmowgoB0005
Bhi04G000327	Cucurbita moschata (Rifu)	cmowgoB0124
Bhi04G000327	Cucurbita moschata (Rifu)	cmowgoB0190
Bhi04G000327	Cucurbita moschata (Rifu)	cmowgoB0570
Bhi04G000327	Cucurbita moschata (Rifu)	cmowgoB0944
Bhi04G000327	Cucurbita pepo (Zucchini)	cpewgoB0141
Bhi04G000327	Cucurbita pepo (Zucchini)	cpewgoB0335
Bhi04G000327	Cucurbita pepo (Zucchini)	cpewgoB0684
Bhi04G000327	Cucurbita pepo (Zucchini)	cpewgoB0860
Bhi04G000327	Cucurbita pepo (Zucchini)	cpewgoB0976
Bhi04G000327	Cucurbita pepo (Zucchini)	cpewgoB1028
Bhi04G000327	Wild cucumber (PI 183967)	cpiwgoB159
Bhi04G000327	Wild cucumber (PI 183967)	cpiwgoB388
Bhi04G000327	Wild cucumber (PI 183967)	cpiwgoB689
Bhi04G000327	Cucumber (Chinese Long) v3	cucwgoB169
Bhi04G000327	Cucumber (Chinese Long) v3	cucwgoB390
Bhi04G000327	Cucumber (Chinese Long) v3	cucwgoB702
Bhi04G000327	Cucumber (Chinese Long) v2	cuwgoB162
Bhi04G000327	Cucumber (Chinese Long) v2	cuwgoB385
Bhi04G000327	Cucumber (Chinese Long) v2	cuwgoB678
Bhi04G000327	Bottle gourd (USVL1VR-Ls)	lsiwgoB323
Bhi04G000327	Bottle gourd (USVL1VR-Ls)	lsiwgoB363
Bhi04G000327	Bottle gourd (USVL1VR-Ls)	lsiwgoB591
Bhi04G000327	Melon (DHL92) v3.6.1	medwgoB228
Bhi04G000327	Melon (DHL92) v3.6.1	medwgoB321
Bhi04G000327	Melon (DHL92) v3.6.1	medwgoB594
Bhi04G000327	Melon (DHL92) v3.5.1	mewgoB228
Bhi04G000327	Melon (DHL92) v3.5.1	mewgoB322
Bhi04G000327	Melon (DHL92) v3.5.1	mewgoB588
Bhi04G000327	Watermelon (Charleston Gray)	wcgwgoB452
Bhi04G000327	Watermelon (Charleston Gray)	wcgwgoB612
Bhi04G000327	Watermelon (97103) v2	wgowmbB301
Bhi04G000327	Watermelon (97103) v2	wgowmbB313
Bhi04G000327	Watermelon (97103) v1	wgowmB297
Bhi04G000327	Watermelon (97103) v1	wgowmB329
Bhi04G000327	Silver-seed gourd	carwgoB0089
Bhi04G000327	Silver-seed gourd	carwgoB0231
Bhi04G000327	Silver-seed gourd	carwgoB0902