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Name | Bhi04M000119 |
Type | mRNA |
Organism | Benincasa hispida (Wax gourd) |
Description | Unknown protein |
Location | chr4 : 3352026 .. 3352430 (-) |
Sequence length | 405 |
The following sequences are available for this feature:
Gene sequence (with intron) Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below. ATGTCTGAAATCTTCGAAGGAAATCAAATCAACTGGAATTCTCTCACTTATGGAGATATTACCAGTAACATTCAAGCATTATGCTTAAGTCTTTGTAAAGACAACAAGCATAATCAAAGAATCATCAAAGATGCAGATTATCCAAAAGAACTAGGGACTTTCTGCAAACAATATGACGTTGAACAAGATCTACTGCCCTCAAAGAAAAAGAAGAAATCCTCAAAGAAACCTTACAGCAAAGGACGAAGAACAAAAGACAAAGAAAAACCTCGAAAGAGGAAATACTACAATAGAAACAAGAAGTATTCCAAAAAGAAAGGAACCACTTGTTTTCGATGCAACAAACAGGGACACTATGCTAATAAATGCCCCTTGATAAAAAAAGTTCAACAGCCTAGAGATTGA mRNA sequence ATGTCTGAAATCTTCGAAGGAAATCAAATCAACTGGAATTCTCTCACTTATGGAGATATTACCAGTAACATTCAAGCATTATGCTTAAGTCTTTGTAAAGACAACAAGCATAATCAAAGAATCATCAAAGATGCAGATTATCCAAAAGAACTAGGGACTTTCTGCAAACAATATGACGTTGAACAAGATCTACTGCCCTCAAAGAAAAAGAAGAAATCCTCAAAGAAACCTTACAGCAAAGGACGAAGAACAAAAGACAAAGAAAAACCTCGAAAGAGGAAATACTACAATAGAAACAAGAAGTATTCCAAAAAGAAAGGAACCACTTGTTTTCGATGCAACAAACAGGGACACTATGCTAATAAATGCCCCTTGATAAAAAAAGTTCAACAGCCTAGAGATTGA Coding sequence (CDS) ATGTCTGAAATCTTCGAAGGAAATCAAATCAACTGGAATTCTCTCACTTATGGAGATATTACCAGTAACATTCAAGCATTATGCTTAAGTCTTTGTAAAGACAACAAGCATAATCAAAGAATCATCAAAGATGCAGATTATCCAAAAGAACTAGGGACTTTCTGCAAACAATATGACGTTGAACAAGATCTACTGCCCTCAAAGAAAAAGAAGAAATCCTCAAAGAAACCTTACAGCAAAGGACGAAGAACAAAAGACAAAGAAAAACCTCGAAAGAGGAAATACTACAATAGAAACAAGAAGTATTCCAAAAAGAAAGGAACCACTTGTTTTCGATGCAACAAACAGGGACACTATGCTAATAAATGCCCCTTGATAAAAAAAGTTCAACAGCCTAGAGATTGA Protein sequence MSEIFEGNQINWNSLTYGDITSNIQALCLSLCKDNKHNQRIIKDADYPKELGTFCKQYDVEQDLLPSKKKKKSSKKPYSKGRRTKDKEKPRKRKYYNRNKKYSKKKGTTCFRCNKQGHYANKCPLIKKVQQPRD
BLAST of Bhi04M000119 vs. TrEMBL
Match: tr|A0A251VEY4|A0A251VEY4_HELAN (Putative reverse transcriptase domain, Zinc finger, CCHC-type, Aspartic peptidase domain protein OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr02g0042351 PE=4 SV=1) HSP 1 Score: 53.9 bits (128), Expect = 3.2e-04 Identity = 35/129 (27.13%), Postives = 51/129 (39.53%), Query Frame = 0 Query: 8 NQINWNSLTYGDITSNIQALCLSLCKDNKHNQRIIKDA-DYPKELGTFCKQYDVEQDLLP 67 N I + L+YG I + I L +C D K ++I +D KELG+FC+QY +E P Sbjct: 155 NNIPYRDLSYGQIINYINQEGLKICNDLKLKEKIKRDGIQGHKELGSFCQQYGLEPFKNP 214
Query: 68 SKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXG----TTCFRCNKQGHYANK 127 SK G C++C +QGHY+ Sbjct: 215 SKSKKKIPKQFIRKNYKRKPYIKNKQKYYKDKIDFQKKKQGKQDIVICYKCGRQGHYSKD 274
Query: 128 CPLIKKVQQ 132 C KK+ + Sbjct: 275 CYTKKKINE 283
BLAST of Bhi04M000119 vs. TrEMBL
Match: tr|A0A251VET5|A0A251VET5_HELAN (Putative reverse transcriptase domain, Zinc finger, CCHC-type, Aspartic peptidase domain protein OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr02g0042331 PE=4 SV=1) HSP 1 Score: 53.9 bits (128), Expect = 3.2e-04 Identity = 35/129 (27.13%), Postives = 51/129 (39.53%), Query Frame = 0 Query: 8 NQINWNSLTYGDITSNIQALCLSLCKDNKHNQRIIKDA-DYPKELGTFCKQYDVEQDLLP 67 N I + L+YG I + I L +C D K ++I +D KELG+FC+QY +E P Sbjct: 462 NNIPYRDLSYGQIINYINQEGLKICNDLKLKEKIKRDGIQGHKELGSFCQQYGLEPFKNP 521
Query: 68 SKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXG----TTCFRCNKQGHYANK 127 SK G C++C +QGHY+ Sbjct: 522 SKSKKKIPKQFIRKNYKRKPYIKNKQKYYKDKIDFQKKKQGKQDIVICYKCGRQGHYSKD 581
Query: 128 CPLIKKVQQ 132 C KK+ + Sbjct: 582 CYTKKKINE 590
BLAST of Bhi04M000119 vs. TrEMBL
Match: tr|A0A1S3ZHT4|A0A1S3ZHT4_TOBAC (uncharacterized protein LOC107786993 OS=Nicotiana tabacum OX=4097 GN=LOC107786993 PE=4 SV=1) HSP 1 Score: 53.5 bits (127), Expect = 4.2e-04 Identity = 72/136 (52.94%), Postives = 87/136 (63.97%), Query Frame = 0 Query: 1 MSEIFEGNQINWNSLTYGDITSNIQALCLSLCKDNKHNQRIIKDADYPK-ELGTFCKQYD 60 M + F G I +++LTYGD+ S I L LC D K I KD K ELG+FC+ + Sbjct: 144 MKDRFNG-LIPYDNLTYGDLISFINVTGLDLCTDLKLKSLIKKDRLQSKTELGSFCQDFG 203
Query: 61 VEQDLLPSK-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGTTCFRCNKQGH 120 + PSK XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXG C+ C+K GH Sbjct: 204 FKTMAAPSKRAKQHKKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDKCWSCSKTGH 263
Query: 121 YANKCPLIKKVQQPRD 135 AN+CP+ K ++ D Sbjct: 264 RANECPVTNKKKKKVD 278
BLAST of Bhi04M000119 vs. NCBI nr
Match: XP_022151716.1 (uncharacterized protein LOC111019629 [Momordica charantia]) HSP 1 Score: 86.3 bits (212), Expect = 8.8e-14 Identity = 64/131 (48.85%), Postives = 83/131 (63.36%), Query Frame = 0 Query: 8 NQINWNSLTYGDITSNIQALCLSLCKDNKHNQRIIKDADYPKELGTFCKQYDVEQ----- 67 N+I+W LT GDI + IQ +C++LC +NKH ++IK+ DY KELGTFCKQY ++ Sbjct: 341 NRIDWAELTIGDINATIQQICVNLCLENKHTAKVIKEPDYRKELGTFCKQYGLDDRXXXX 400
Query: 68 ----DLLPSKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGTTCFRCNKQGH 127 XXXXXXXXXXXXXXXXXXXXXX TC++CN++GH Sbjct: 401 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRNKGKKDYSKNRPHKSSVTCYKCNRKGH 460
Query: 128 YANKCPLIKKV 130 Y++KCPL K+ Sbjct: 461 YSSKCPLKDKI 471
BLAST of Bhi04M000119 vs. NCBI nr
Match: RDY03799.1 (hypothetical protein CR513_12569, partial [Mucuna pruriens]) HSP 1 Score: 57.4 bits (137), Expect = 4.4e-05 Identity = 41/146 (28.08%), Postives = 55/146 (37.67%), Query Frame = 0 Query: 7 GNQINWNSLTYGDITSNIQALCLSLCKDNKHNQRIIKDADYPK-ELGTFCKQYDVEQDLL 66 G I + SLTYG + + I + +C D K +I K++ K ELGTFC QY+VE Sbjct: 122 GQPIAYESLTYGQLHNIIVETGIQVCTDFKLQNKIKKESTSSKRELGTFCNQYEVEPMRT 181
Query: 67 PS-----------------KXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGT 126 PS K Sbjct: 182 PSACHKKKQKQERSYNRSYKQYRRSTYKRKRVSNKNQNPIVENKQRFNKKQRHKNIKREV 241
Query: 127 TCFRCNKQGHYANKCPLIKKVQQPRD 135 C+RC K GHYANKC +++K+ Q D Sbjct: 242 KCWRCGKVGHYANKCRVMQKINQLED 267
BLAST of Bhi04M000119 vs. NCBI nr
Match: XP_023552915.1 (uncharacterized protein LOC111810441 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 56.2 bits (134), Expect = 9.7e-05 Identity = 53/133 (39.85%), Postives = 66/133 (49.62%), Query Frame = 0 Query: 10 INWNSLTYGDITSNIQALCLSLCKDNKHNQRIIKDADYPKELGTFCKQYDVEQDLLPS-- 69 I W +L+YG I S I L LC ++K ++ KELG FC QY + PS Sbjct: 182 IPWQTLSYGSIASFIIEEGLRLCNESKIQNKLNSSVSNRKELGRFCDQYGCKGIEAPSTS 241
Query: 70 ---------KXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGTTCFRCNKQGH 129 K XXXXXXXXXXXXXXXXX TCF+C ++GH Sbjct: 242 RRKKFKTHPKPYHSYRPRXXXXXXXXXXXXXXXXXRKYTPTKPHKGKKRQTCFKCREEGH 301
Query: 130 YANKCPLIKKVQQ 132 YANKCP+ K+ + Sbjct: 302 YANKCPIRGKINE 314
BLAST of Bhi04M000119 vs. NCBI nr
Match: RDX88195.1 (hypothetical protein CR513_30242, partial [Mucuna pruriens]) HSP 1 Score: 56.2 bits (134), Expect = 9.7e-05 Identity = 39/134 (29.10%), Postives = 52/134 (38.81%), Query Frame = 0 Query: 7 GNQINWNSLTYGDITSNIQALCLSLCKDNKHNQRIIKD-ADYPKELGTFCKQYDVEQDLL 66 G I + SLTYG + + I + +C + K I K+ A KELGTFC QY VE Sbjct: 451 GQPIAYESLTYGQLYNIIVETGIQVCTNFKLQNNIRKESASSKKELGTFCYQYGVEPMRA 510
Query: 67 P-----SKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGTTCFRCNKQGHYA 126 P K C++C K GHYA Sbjct: 511 PIARHKKKQKQERSYNRSYKQYRKSAYKRKRVSNQNQNPTAENKKREVKCWKCRKVGHYA 570
Query: 127 NKCPLIKKVQQPRD 135 NKC +I+K+ + D Sbjct: 571 NKCKVIQKINKLED 584
BLAST of Bhi04M000119 vs. NCBI nr
Match: OTG34130.1 (putative reverse transcriptase domain, Zinc finger, CCHC-type, Aspartic peptidase domain protein [Helianthus annuus]) HSP 1 Score: 53.9 bits (128), Expect = 4.8e-04 Identity = 35/129 (27.13%), Postives = 51/129 (39.53%), Query Frame = 0 Query: 8 NQINWNSLTYGDITSNIQALCLSLCKDNKHNQRIIKDA-DYPKELGTFCKQYDVEQDLLP 67 N I + L+YG I + I L +C D K ++I +D KELG+FC+QY +E P Sbjct: 155 NNIPYRDLSYGQIINYINQEGLKICNDLKLKEKIKRDGIQGHKELGSFCQQYGLEPFKNP 214
Query: 68 SKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXG----TTCFRCNKQGHYANK 127 SK G C++C +QGHY+ Sbjct: 215 SKSKKKIPKQFIRKNYKRKPYIKNKQKYYKDKIDFQKKKQGKQDIVICYKCGRQGHYSKD 274
Query: 128 CPLIKKVQQ 132 C KK+ + Sbjct: 275 CYTKKKINE 283
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
XP_022151716.1 | 8.8e-14 | 48.85 | uncharacterized protein LOC111019629 [Momordica charantia] | [more] |
RDY03799.1 | 4.4e-05 | 28.08 | hypothetical protein CR513_12569, partial [Mucuna pruriens] | [more] |
XP_023552915.1 | 9.7e-05 | 39.85 | uncharacterized protein LOC111810441 [Cucurbita pepo subsp. pepo] | [more] |
RDX88195.1 | 9.7e-05 | 29.10 | hypothetical protein CR513_30242, partial [Mucuna pruriens] | [more] |
OTG34130.1 | 4.8e-04 | 27.13 | putative reverse transcriptase domain, Zinc finger, CCHC-type, Aspartic peptidas... | [more] |
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
Term | Definition |
GO:0008270 | zinc ion binding |
GO:0003676 | nucleic acid binding |
GO Assignments
This mRNA is annotated with the following GO terms.
Category |
Term Accession |
Term Name |
molecular_function |
GO:0003676 |
nucleic acid binding |
molecular_function |
GO:0008270 |
zinc ion binding |
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Type |
cds.Bhi04M000119 | cds.Bhi04M000119 | CDS |
The following exon feature(s) are a part of this mRNA:
Feature Name | Unique Name | Type |
Bhi04M000119.exon1 | Bhi04M000119.exon1 | exon |
The following polypeptide feature(s) derives from this mRNA:
Feature Name | Unique Name | Type |
Bhi04M000119 | Bhi04M000119-protein | polypeptide |
Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17
IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
IPR001878 | Zinc finger, CCHC-type | SMART | SM00343 | c2hcfinal6 | coord: 109..125 e-value: 0.003 score: 26.8 |
IPR001878 | Zinc finger, CCHC-type | PFAM | PF00098 | zf-CCHC | coord: 109..124 e-value: 1.5E-4 score: 21.6 |
IPR001878 | Zinc finger, CCHC-type | PROSITE | PS50158 | ZF_CCHC | coord: 110..124 score: 10.147 |
None | No IPR available | GENE3D | G3DSA:4.10.60.10 | | coord: 101..134 e-value: 1.3E-6 score: 30.4 |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 66..103 |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 69..103 |
IPR036875 | Zinc finger, CCHC-type superfamily | SUPERFAMILY | SSF57756 | Retrovirus zinc finger-like domains | coord: 93..130 |
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