Bhi04G000119 (gene) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi04G000119
Type	gene
Organism	Benincasa hispida (Wax gourd)
Description	Unknown protein
Location	chr4 : 3352026 .. 3352430 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTGAAATCTTCGAAGGAAATCAAATCAACTGGAATTCTCTCACTTATGGAGATATTACCAGTAACATTCAAGCATTATGCTTAAGTCTTTGTAAAGACAACAAGCATAATCAAAGAATCATCAAAGATGCAGATTATCCAAAAGAACTAGGGACTTTCTGCAAACAATATGACGTTGAACAAGATCTACTGCCCTCAAAGAAAAAGAAGAAATCCTCAAAGAAACCTTACAGCAAAGGACGAAGAACAAAAGACAAAGAAAAACCTCGAAAGAGGAAATACTACAATAGAAACAAGAAGTATTCCAAAAAGAAAGGAACCACTTGTTTTCGATGCAACAAACAGGGACACTATGCTAATAAATGCCCCTTGATAAAAAAAGTTCAACAGCCTAGAGATTGA

mRNA sequence

ATGTCTGAAATCTTCGAAGGAAATCAAATCAACTGGAATTCTCTCACTTATGGAGATATTACCAGTAACATTCAAGCATTATGCTTAAGTCTTTGTAAAGACAACAAGCATAATCAAAGAATCATCAAAGATGCAGATTATCCAAAAGAACTAGGGACTTTCTGCAAACAATATGACGTTGAACAAGATCTACTGCCCTCAAAGAAAAAGAAGAAATCCTCAAAGAAACCTTACAGCAAAGGACGAAGAACAAAAGACAAAGAAAAACCTCGAAAGAGGAAATACTACAATAGAAACAAGAAGTATTCCAAAAAGAAAGGAACCACTTGTTTTCGATGCAACAAACAGGGACACTATGCTAATAAATGCCCCTTGATAAAAAAAGTTCAACAGCCTAGAGATTGA

Coding sequence (CDS)

ATGTCTGAAATCTTCGAAGGAAATCAAATCAACTGGAATTCTCTCACTTATGGAGATATTACCAGTAACATTCAAGCATTATGCTTAAGTCTTTGTAAAGACAACAAGCATAATCAAAGAATCATCAAAGATGCAGATTATCCAAAAGAACTAGGGACTTTCTGCAAACAATATGACGTTGAACAAGATCTACTGCCCTCAAAGAAAAAGAAGAAATCCTCAAAGAAACCTTACAGCAAAGGACGAAGAACAAAAGACAAAGAAAAACCTCGAAAGAGGAAATACTACAATAGAAACAAGAAGTATTCCAAAAAGAAAGGAACCACTTGTTTTCGATGCAACAAACAGGGACACTATGCTAATAAATGCCCCTTGATAAAAAAAGTTCAACAGCCTAGAGATTGA

Protein sequence

MSEIFEGNQINWNSLTYGDITSNIQALCLSLCKDNKHNQRIIKDADYPKELGTFCKQYDVEQDLLPSKKKKKSSKKPYSKGRRTKDKEKPRKRKYYNRNKKYSKKKGTTCFRCNKQGHYANKCPLIKKVQQPRD

Homology

[Close]

BLAST of Bhi04G000119 vs. TrEMBL
Match: tr|A0A251VEY4|A0A251VEY4_HELAN (Putative reverse transcriptase domain, Zinc finger, CCHC-type, Aspartic peptidase domain protein OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr02g0042351 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 3.2e-04
Identity = 35/129 (27.13%), Postives = 51/129 (39.53%), Query Frame = 0


Query: 8   NQINWNSLTYGDITSNIQALCLSLCKDNKHNQRIIKDA-DYPKELGTFCKQYDVEQDLLP 67
           N I +  L+YG I + I    L +C D K  ++I +D     KELG+FC+QY +E    P
Sbjct: 155 NNIPYRDLSYGQIINYINQEGLKICNDLKLKEKIKRDGIQGHKELGSFCQQYGLEPFKNP 214

Query: 68  SKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXG----TTCFRCNKQGHYANK 127
           SK                                      G      C++C +QGHY+  
Sbjct: 215 SKSKKKIPKQFIRKNYKRKPYIKNKQKYYKDKIDFQKKKQGKQDIVICYKCGRQGHYSKD 274

Query: 128 CPLIKKVQQ 132
           C   KK+ +
Sbjct: 275 CYTKKKINE 283

[Close]

BLAST of Bhi04G000119 vs. TrEMBL
Match: tr|A0A251VET5|A0A251VET5_HELAN (Putative reverse transcriptase domain, Zinc finger, CCHC-type, Aspartic peptidase domain protein OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr02g0042331 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 3.2e-04
Identity = 35/129 (27.13%), Postives = 51/129 (39.53%), Query Frame = 0


Query: 8   NQINWNSLTYGDITSNIQALCLSLCKDNKHNQRIIKDA-DYPKELGTFCKQYDVEQDLLP 67
           N I +  L+YG I + I    L +C D K  ++I +D     KELG+FC+QY +E    P
Sbjct: 462 NNIPYRDLSYGQIINYINQEGLKICNDLKLKEKIKRDGIQGHKELGSFCQQYGLEPFKNP 521

Query: 68  SKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXG----TTCFRCNKQGHYANK 127
           SK                                      G      C++C +QGHY+  
Sbjct: 522 SKSKKKIPKQFIRKNYKRKPYIKNKQKYYKDKIDFQKKKQGKQDIVICYKCGRQGHYSKD 581

Query: 128 CPLIKKVQQ 132
           C   KK+ +
Sbjct: 582 CYTKKKINE 590

[Close]

BLAST of Bhi04G000119 vs. TrEMBL
Match: tr|A0A1S3ZHT4|A0A1S3ZHT4_TOBAC (uncharacterized protein LOC107786993 OS=Nicotiana tabacum OX=4097 GN=LOC107786993 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 4.2e-04
Identity = 72/136 (52.94%), Postives = 87/136 (63.97%), Query Frame = 0


Query: 1   MSEIFEGNQINWNSLTYGDITSNIQALCLSLCKDNKHNQRIIKDADYPK-ELGTFCKQYD 60
           M + F G  I +++LTYGD+ S I    L LC D K    I KD    K ELG+FC+ + 
Sbjct: 144 MKDRFNG-LIPYDNLTYGDLISFINVTGLDLCTDLKLKSLIKKDRLQSKTELGSFCQDFG 203

Query: 61  VEQDLLPSK-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGTTCFRCNKQGH 120
            +    PSK       XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXG  C+ C+K GH
Sbjct: 204 FKTMAAPSKRAKQHKKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDKCWSCSKTGH 263

Query: 121 YANKCPLIKKVQQPRD 135
            AN+CP+  K ++  D
Sbjct: 264 RANECPVTNKKKKKVD 278

[Close]

BLAST of Bhi04G000119 vs. NCBI nr
Match: XP_022151716.1 (uncharacterized protein LOC111019629 [Momordica charantia])

HSP 1 Score: 86.3 bits (212), Expect = 8.8e-14
Identity = 64/131 (48.85%), Postives = 83/131 (63.36%), Query Frame = 0


Query: 8   NQINWNSLTYGDITSNIQALCLSLCKDNKHNQRIIKDADYPKELGTFCKQYDVEQ----- 67
           N+I+W  LT GDI + IQ +C++LC +NKH  ++IK+ DY KELGTFCKQY ++      
Sbjct: 341 NRIDWAELTIGDINATIQQICVNLCLENKHTAKVIKEPDYRKELGTFCKQYGLDDRXXXX 400

Query: 68  ----DLLPSKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGTTCFRCNKQGH 127
                     XXXXXXXXXXXXXXXXXXXXXX                  TC++CN++GH
Sbjct: 401 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRNKGKKDYSKNRPHKSSVTCYKCNRKGH 460

Query: 128 YANKCPLIKKV 130
           Y++KCPL  K+
Sbjct: 461 YSSKCPLKDKI 471

[Close]

BLAST of Bhi04G000119 vs. NCBI nr
Match: RDY03799.1 (hypothetical protein CR513_12569, partial [Mucuna pruriens])

HSP 1 Score: 57.4 bits (137), Expect = 4.4e-05
Identity = 41/146 (28.08%), Postives = 55/146 (37.67%), Query Frame = 0


Query: 7   GNQINWNSLTYGDITSNIQALCLSLCKDNKHNQRIIKDADYPK-ELGTFCKQYDVEQDLL 66
           G  I + SLTYG + + I    + +C D K   +I K++   K ELGTFC QY+VE    
Sbjct: 122 GQPIAYESLTYGQLHNIIVETGIQVCTDFKLQNKIKKESTSSKRELGTFCNQYEVEPMRT 181

Query: 67  PS-----------------KXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGT 126
           PS                 K                                        
Sbjct: 182 PSACHKKKQKQERSYNRSYKQYRRSTYKRKRVSNKNQNPIVENKQRFNKKQRHKNIKREV 241

Query: 127 TCFRCNKQGHYANKCPLIKKVQQPRD 135
            C+RC K GHYANKC +++K+ Q  D
Sbjct: 242 KCWRCGKVGHYANKCRVMQKINQLED 267

[Close]

BLAST of Bhi04G000119 vs. NCBI nr
Match: XP_023552915.1 (uncharacterized protein LOC111810441 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 56.2 bits (134), Expect = 9.7e-05
Identity = 53/133 (39.85%), Postives = 66/133 (49.62%), Query Frame = 0


Query: 10  INWNSLTYGDITSNIQALCLSLCKDNKHNQRIIKDADYPKELGTFCKQYDVEQDLLPS-- 69
           I W +L+YG I S I    L LC ++K   ++       KELG FC QY  +    PS  
Sbjct: 182 IPWQTLSYGSIASFIIEEGLRLCNESKIQNKLNSSVSNRKELGRFCDQYGCKGIEAPSTS 241

Query: 70  ---------KXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGTTCFRCNKQGH 129
                    K        XXXXXXXXXXXXXXXXX               TCF+C ++GH
Sbjct: 242 RRKKFKTHPKPYHSYRPRXXXXXXXXXXXXXXXXXRKYTPTKPHKGKKRQTCFKCREEGH 301

Query: 130 YANKCPLIKKVQQ 132
           YANKCP+  K+ +
Sbjct: 302 YANKCPIRGKINE 314

[Close]

BLAST of Bhi04G000119 vs. NCBI nr
Match: RDX88195.1 (hypothetical protein CR513_30242, partial [Mucuna pruriens])

HSP 1 Score: 56.2 bits (134), Expect = 9.7e-05
Identity = 39/134 (29.10%), Postives = 52/134 (38.81%), Query Frame = 0


Query: 7   GNQINWNSLTYGDITSNIQALCLSLCKDNKHNQRIIKD-ADYPKELGTFCKQYDVEQDLL 66
           G  I + SLTYG + + I    + +C + K    I K+ A   KELGTFC QY VE    
Sbjct: 451 GQPIAYESLTYGQLYNIIVETGIQVCTNFKLQNNIRKESASSKKELGTFCYQYGVEPMRA 510

Query: 67  P-----SKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGTTCFRCNKQGHYA 126
           P      K                                         C++C K GHYA
Sbjct: 511 PIARHKKKQKQERSYNRSYKQYRKSAYKRKRVSNQNQNPTAENKKREVKCWKCRKVGHYA 570

Query: 127 NKCPLIKKVQQPRD 135
           NKC +I+K+ +  D
Sbjct: 571 NKCKVIQKINKLED 584

[Close]

BLAST of Bhi04G000119 vs. NCBI nr
Match: OTG34130.1 (putative reverse transcriptase domain, Zinc finger, CCHC-type, Aspartic peptidase domain protein [Helianthus annuus])

HSP 1 Score: 53.9 bits (128), Expect = 4.8e-04
Identity = 35/129 (27.13%), Postives = 51/129 (39.53%), Query Frame = 0


Query: 8   NQINWNSLTYGDITSNIQALCLSLCKDNKHNQRIIKDA-DYPKELGTFCKQYDVEQDLLP 67
           N I +  L+YG I + I    L +C D K  ++I +D     KELG+FC+QY +E    P
Sbjct: 155 NNIPYRDLSYGQIINYINQEGLKICNDLKLKEKIKRDGIQGHKELGSFCQQYGLEPFKNP 214

Query: 68  SKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXG----TTCFRCNKQGHYANK 127
           SK                                      G      C++C +QGHY+  
Sbjct: 215 SKSKKKIPKQFIRKNYKRKPYIKNKQKYYKDKIDFQKKKQGKQDIVICYKCGRQGHYSKD 274

Query: 128 CPLIKKVQQ 132
           C   KK+ +
Sbjct: 275 CYTKKKINE 283

The following BLAST results are available for this feature:

BLAST of Bhi04G000119 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Bhi04G000119 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Bhi04G000119 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A251VEY4\|A0A251VEY4_HELAN	3.2e-04	27.13	Putative reverse transcriptase domain, Zinc finger, CCHC-type, Aspartic peptidas...	[more]
tr\|A0A251VET5\|A0A251VET5_HELAN	3.2e-04	27.13	Putative reverse transcriptase domain, Zinc finger, CCHC-type, Aspartic peptidas...	[more]
tr\|A0A1S3ZHT4\|A0A1S3ZHT4_TOBAC	4.2e-04	52.94	uncharacterized protein LOC107786993 OS=Nicotiana tabacum OX=4097 GN=LOC10778699...	[more]

BLAST of Bhi04G000119 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022151716.1	8.8e-14	48.85	uncharacterized protein LOC111019629 [Momordica charantia]	[more]
RDY03799.1	4.4e-05	28.08	hypothetical protein CR513_12569, partial [Mucuna pruriens]	[more]
XP_023552915.1	9.7e-05	39.85	uncharacterized protein LOC111810441 [Cucurbita pepo subsp. pepo]	[more]
RDX88195.1	9.7e-05	29.10	hypothetical protein CR513_30242, partial [Mucuna pruriens]	[more]
OTG34130.1	4.8e-04	27.13	putative reverse transcriptase domain, Zinc finger, CCHC-type, Aspartic peptidas...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0008270	zinc ion binding
GO:0003676	nucleic acid binding

Vocabulary: **INTERPRO**
Term	Definition
IPR036875	Znf_CCHC_sf
IPR001878	Znf_CCHC

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi04M000119	Bhi04M000119	mRNA

InterPro

Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001878	Zinc finger, CCHC-type	SMART	SM00343	c2hcfinal6	coord: 109..125 e-value: 0.003 score: 26.8
IPR001878	Zinc finger, CCHC-type	PFAM	PF00098	zf-CCHC	coord: 109..124 e-value: 1.5E-4 score: 21.6
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 110..124 score: 10.147
None	No IPR available	GENE3D	G3DSA:4.10.60.10		coord: 101..134 e-value: 1.3E-6 score: 30.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 66..103
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 69..103
IPR036875	Zinc finger, CCHC-type superfamily	SUPERFAMILY	SSF57756	Retrovirus zinc finger-like domains	coord: 93..130

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Bhi04G000119	Cucumber (Gy14) v2	cgybwgoB162
Bhi04G000119	Cucurbita maxima (Rimu)	cmawgoB0195
Bhi04G000119	Cucurbita maxima (Rimu)	cmawgoB0945
Bhi04G000119	Cucurbita moschata (Rifu)	cmowgoB0191
Bhi04G000119	Cucurbita moschata (Rifu)	cmowgoB0945
Bhi04G000119	Cucurbita pepo (Zucchini)	cpewgoB0142
Bhi04G000119	Cucurbita pepo (Zucchini)	cpewgoB1029
Bhi04G000119	Wild cucumber (PI 183967)	cpiwgoB164
Bhi04G000119	Cucumber (Chinese Long) v3	cucwgoB174
Bhi04G000119	Cucumber (Chinese Long) v2	cuwgoB167
Bhi04G000119	Bottle gourd (USVL1VR-Ls)	lsiwgoB592
Bhi04G000119	Melon (DHL92) v3.6.1	medwgoB331
Bhi04G000119	Melon (DHL92) v3.5.1	mewgoB330
Bhi04G000119	Watermelon (Charleston Gray)	wcgwgoB613
Bhi04G000119	Watermelon (97103) v2	wgowmbB314
Bhi04G000119	Watermelon (97103) v1	wgowmB298
Bhi04G000119	Silver-seed gourd	carwgoB0173
Bhi04G000119	Silver-seed gourd	carwgoB1142
Bhi04G000119	Cucumber (Gy14) v1	cgywgoB318