Bhi02M000372 (mRNA) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi02M000372
Type	mRNA
Organism	Benincasa hispida (Wax gourd)
Description	short-chain dehydrogenase TIC 32, chloroplastic
Location	chr2 : 9480365 .. 9481466 (-)
Sequence length	363

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGGATACTCTTAGATACTTGGCAGGAATTCCAGGCCCCAGTGGCTATGGCTCCAAATCCACTGCTGAACAAGTCACTCTATTTTCTTCTTCTTCTTCTTCCACTTCTACTTCTCAACTTACTGCCATTATTACTGGTAATTATAATTTTCATCTATTTTCTTCTTATTTTTCTCAATTATATTCTCTCTGTTTTTTCTTGTCTGCATGGAGCCTTCTAAATTAATTTCCTTGGGCTTTGATAATTTCATCATTTTCTTGCCTCCAATGAGTTTATCATTATGTGTAATTCTTGAACTTTTGAAATTTAAAATCCTTCTGCTCTTGAATTTTGGAGAATCATATATACACTGCTAAATTGGGTTATATATTCTTAATTATTCTTCACAATATATTAAGTTCAATTTGTCATTGACCATTGAGAGTTTTAGTGATTTCTTCAGGGTTTTGCATGCATTCAATATTTCTCCTCTCTCTCTCTCTCTCAAGAGAAGTTCAAAAAGGCTAATTCTTTTTTGAGATTTGGGAAATGGGATTAGTCGAGGAGCGCTTAAGTTAGGCTCGTACACTCATATATATAAAAAAAATAAAAAATAAAAATTTGGGAAGTAGGATTTATTATTGTTATTATTATTTTATGGGAACATCTGTTCTTCATTTGAGGCTCTCATATCAATAGCAGAGATATGGTTTTGTCACTTTTCAGATTGTATTTTGGATCAACACTCATCTATGTATATATAGCAGCTTTCTGGACCACACATCAAAAGAATATATATGTTTGTGTGTGTAAATTAAAATTTTACTCAAATTATTATACATAATTAAAGTGGAGGAAATTGAAAAAACAATTTATTTTTGATTATTGAAAATTAGGGGCAACATCAGGAATTGGGGCAGAAACAGCAAGGGTATTGGCAAAGAGAGGAGTGAAAATAGTGATGCCAGCAAGAGACTTGAAAAAAGCAGCTCAAGTAAAAGAAGCAATTCAAAAGGAAAGCCCTGAGGCTGAGATTATTGTGTGTGAGATTGATCTCAGTTCATTGGCTTCTGTCCAAAGATTCTGTAATGGAGTTTCTTGCTCTTGGACTCCCACTTAA

mRNA sequence

ATGAAGGATACTCTTAGATACTTGGCAGGAATTCCAGGCCCCAGTGGCTATGGCTCCAAATCCACTGCTGAACAAGTCACTCTATTTTCTTCTTCTTCTTCTTCCACTTCTACTTCTCAACTTACTGCCATTATTACTGGGGCAACATCAGGAATTGGGGCAGAAACAGCAAGGGTATTGGCAAAGAGAGGAGTGAAAATAGTGATGCCAGCAAGAGACTTGAAAAAAGCAGCTCAAGTAAAAGAAGCAATTCAAAAGGAAAGCCCTGAGGCTGAGATTATTGTGTGTGAGATTGATCTCAGTTCATTGGCTTCTGTCCAAAGATTCTGTAATGGAGTTTCTTGCTCTTGGACTCCCACTTAA

Coding sequence (CDS)

ATGAAGGATACTCTTAGATACTTGGCAGGAATTCCAGGCCCCAGTGGCTATGGCTCCAAATCCACTGCTGAACAAGTCACTCTATTTTCTTCTTCTTCTTCTTCCACTTCTACTTCTCAACTTACTGCCATTATTACTGGGGCAACATCAGGAATTGGGGCAGAAACAGCAAGGGTATTGGCAAAGAGAGGAGTGAAAATAGTGATGCCAGCAAGAGACTTGAAAAAAGCAGCTCAAGTAAAAGAAGCAATTCAAAAGGAAAGCCCTGAGGCTGAGATTATTGTGTGTGAGATTGATCTCAGTTCATTGGCTTCTGTCCAAAGATTCTGTAATGGAGTTTCTTGCTCTTGGACTCCCACTTAA

Protein sequence

MKDTLRYLAGIPGPSGYGSKSTAEQVTLFSSSSSSTSTSQLTAIITGATSGIGAETARVLAKRGVKIVMPARDLKKAAQVKEAIQKESPEAEIIVCEIDLSSLASVQRFCNGVSCSWTPT

Homology

[Close]

BLAST of Bhi02M000372 vs. Swiss-Prot
Match: sp|A2RVM0|TIC32_ARATH (Short-chain dehydrogenase TIC 32, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=TIC32 PE=2 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 4.4e-16
Identity = 52/110 (47.27%), Postives = 70/110 (63.64%), Query Frame = 0


Query: 10  GIPGPSGYGSKSTAEQVTLFSSXXXXXXXXXLTAIITGATSGIGAETARVLAKRGVKIVM 69
           G  G SG+ S+STAE+VT             LTAI+TGA+SGIG ETARVL+ RGV +VM
Sbjct: 5   GSKGASGFSSRSTAEEVT------HGVDGTGLTAIVTGASSGIGVETARVLSLRGVHVVM 64

Query: 70  PARDLKKAAQVKEAIQKESPEAEIIVCEIDLSSLASVQRFCNGVSCSWTP 120
             R+    A+VKE I K+ P A++ V E+DLSS+ SV++F +    +  P
Sbjct: 65  AVRNTDSGAKVKEDIVKQVPGAKLDVMELDLSSMQSVRKFASEYKSTGLP 108

[Close]

BLAST of Bhi02M000372 vs. Swiss-Prot
Match: sp|Q6RVV4|TIC32_PEA (Short-chain dehydrogenase TIC 32, chloroplastic OS=Pisum sativum OX=3888 GN=TIC32 PE=1 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 3.7e-15
Identity = 50/107 (46.73%), Postives = 66/107 (61.68%), Query Frame = 0


Query: 13  GPSGYGSKSTAEQVTLFSSXXXXXXXXXLTAIITGATSGIGAETARVLAKRGVKIVMPAR 72
           G SG+   STAEQVT             LTAI+TGA+SGIGAET RVLA RG  ++M  R
Sbjct: 9   GVSGFSGSSTAEQVT------HGIDATGLTAIVTGASSGIGAETTRVLALRGAHVIMGVR 68

Query: 73  DLKKAAQVKEAIQKESPEAEIIVCEIDLSSLASVQRFCNGVSCSWTP 120
           ++  A  VK+ I K+ P A++   E+DLSSL SV++F +  + S  P
Sbjct: 69  NMVAAKDVKDTILKDIPSAKVDAIELDLSSLDSVKKFASEFNSSGRP 109

[Close]

BLAST of Bhi02M000372 vs. Swiss-Prot
Match: sp|P59837|RDH12_BOVIN (Retinol dehydrogenase 12 OS=Bos taurus OX=9913 GN=RDH12 PE=2 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 2.9e-07
Identity = 27/69 (39.13%), Postives = 44/69 (63.77%), Query Frame = 0


Query: 44  IITGATSGIGAETARVLAKRGVKIVMPARDLKKAAQVKEAIQKESPEAEIIVCEIDLSSL 103
           +ITGA +GIG ETAR LA+RG ++ +  RD+ K       IQ ++  ++++V ++DLS  
Sbjct: 43  VITGANTGIGKETARELARRGARVYIACRDVLKGESAASEIQADTKNSQVLVRKLDLSDT 102

Query: 104 ASVQRFCNG 113
            S++ F  G
Sbjct: 103 KSIRAFAEG 111

[Close]

BLAST of Bhi02M000372 vs. Swiss-Prot
Match: sp|Q8TC12|RDH11_HUMAN (Retinol dehydrogenase 11 OS=Homo sapiens OX=9606 GN=RDH11 PE=1 SV=2)

HSP 1 Score: 54.7 bits (130), Expect = 8.3e-07
Identity = 26/69 (37.68%), Postives = 45/69 (65.22%), Query Frame = 0


Query: 44  IITGATSGIGAETARVLAKRGVKIVMPARDLKKAAQVKEAIQKESPEAEIIVCEIDLSSL 103
           ++TGA +GIG ETA+ LA+RG ++ +  RD++K   V + IQ  +   +++V ++DLS  
Sbjct: 45  VVTGANTGIGKETAKELAQRGARVYLACRDVEKGELVAKEIQTTTGNQQVLVRKLDLSDT 104

Query: 104 ASVQRFCNG 113
            S++ F  G
Sbjct: 105 KSIRAFAKG 113

[Close]

BLAST of Bhi02M000372 vs. Swiss-Prot
Match: sp|Q96NR8|RDH12_HUMAN (Retinol dehydrogenase 12 OS=Homo sapiens OX=9606 GN=RDH12 PE=1 SV=3)

HSP 1 Score: 53.5 bits (127), Expect = 1.8e-06
Identity = 26/69 (37.68%), Postives = 43/69 (62.32%), Query Frame = 0


Query: 44  IITGATSGIGAETARVLAKRGVKIVMPARDLKKAAQVKEAIQKESPEAEIIVCEIDLSSL 103
           +ITGA +GIG ETAR LA RG ++ +  RD+ K       I+ ++  ++++V ++DLS  
Sbjct: 43  VITGANTGIGKETARELASRGARVYIACRDVLKGESAASEIRVDTKNSQVLVRKLDLSDT 102

Query: 104 ASVQRFCNG 113
            S++ F  G
Sbjct: 103 KSIRAFAEG 111

[Close]

BLAST of Bhi02M000372 vs. TAIR10
Match: AT5G50130.1 (NAD(P)-binding Rossmann-fold superfamily protein)

HSP 1 Score: 136.3 bits (342), Expect = 1.2e-32
Identity = 76/111 (68.47%), Postives = 88/111 (79.28%), Query Frame = 0


Query: 1   MKDTLRYLAGIPGPSGYGSKSTAEQVTLFSSXXXXXXXXXLTAIITGATSGIGAETARVL 60
           MK TLRYLAGI GP+G+GS+STAEQVT  S          LTAIITG TSGIGAETARVL
Sbjct: 1   MKGTLRYLAGIAGPNGFGSRSTAEQVTQHS----FFPCSHLTAIITGGTSGIGAETARVL 60

Query: 61  AKRGVKIVMPARDLKKAAQVKEAIQKESPEAEIIVCEIDLSSLASVQRFCN 112
           AKRGV++VM  RD+KKA  VKE I +E+PEA+II+ EIDLSSL+SV RFC+
Sbjct: 61  AKRGVRVVMAVRDMKKAEMVKERIIRENPEADIILFEIDLSSLSSVARFCS 107

[Close]

BLAST of Bhi02M000372 vs. TAIR10
Match: AT1G64590.1 (NAD(P)-binding Rossmann-fold superfamily protein)

HSP 1 Score: 112.5 bits (280), Expect = 1.9e-25
Identity = 64/109 (58.72%), Postives = 79/109 (72.48%), Query Frame = 0


Query: 1   MKDTLRYLAGIPGPSGYGSKSTAEQVTLFSSXXXXXXXXXLTAIITGATSGIGAETARVL 60
           M +T+++L G  GPSG+GS+STA+ VT  S          LTAIITGATSGIGAETARVL
Sbjct: 1   MIETVKHLIGSGGPSGFGSRSTADHVTCNSD------LRSLTAIITGATSGIGAETARVL 60

Query: 61  AKRGVKIVMPARDLKKAAQVKEAIQKESPEAEIIVCEIDLSSLASVQRF 110
           AKRG ++V+PAR +K A + K  I  E P+AEIIV  +DLSSL SV+RF
Sbjct: 61  AKRGARLVLPARSVKTAEETKARILSEFPDAEIIVMHLDLSSLTSVRRF 103

[Close]

BLAST of Bhi02M000372 vs. TAIR10
Match: AT4G24050.1 (NAD(P)-binding Rossmann-fold superfamily protein)

HSP 1 Score: 110.5 bits (275), Expect = 7.1e-25
Identity = 61/109 (55.96%), Postives = 78/109 (71.56%), Query Frame = 0


Query: 1   MKDTLRYLAGIPGPSGYGSKSTAEQVTLFSSXXXXXXXXXLTAIITGATSGIGAETARVL 60
           M +T +YL G  G SG+GSKSTAE+VT             +TA+ITGATSGIGAETARVL
Sbjct: 1   MIETGKYLLGAAGASGFGSKSTAEEVT------ENCDLRSITAVITGATSGIGAETARVL 60

Query: 61  AKRGVKIVMPARDLKKAAQVKEAIQKESPEAEIIVCEIDLSSLASVQRF 110
           AKRG +++ PAR++K A + KE I  E PE EI+V ++DLSS+ASV+ F
Sbjct: 61  AKRGARLIFPARNVKAAEEAKERIVSEFPETEIVVMKLDLSSIASVRNF 103

[Close]

BLAST of Bhi02M000372 vs. TAIR10
Match: AT4G23430.2 (NAD(P)-binding Rossmann-fold superfamily protein)

HSP 1 Score: 85.5 bits (210), Expect = 2.4e-17
Identity = 52/110 (47.27%), Postives = 70/110 (63.64%), Query Frame = 0


Query: 10  GIPGPSGYGSKSTAEQVTLFSSXXXXXXXXXLTAIITGATSGIGAETARVLAKRGVKIVM 69
           G  G SG+ S+STAE+VT             LTAI+TGA+SGIG ETARVL+ RGV +VM
Sbjct: 5   GSKGASGFSSRSTAEEVT------HGVDGTGLTAIVTGASSGIGVETARVLSLRGVHVVM 64

Query: 70  PARDLKKAAQVKEAIQKESPEAEIIVCEIDLSSLASVQRFCNGVSCSWTP 120
             R+    A+VKE I K+ P A++ V E+DLSS+ SV++F +    +  P
Sbjct: 65  AVRNTDSGAKVKEDIVKQVPGAKLDVMELDLSSMQSVRKFASEYKSTGLP 108

[Close]

BLAST of Bhi02M000372 vs. TAIR10
Match: AT4G11410.1 (NAD(P)-binding Rossmann-fold superfamily protein)

HSP 1 Score: 82.4 bits (202), Expect = 2.1e-16
Identity = 49/99 (49.49%), Postives = 66/99 (66.67%), Query Frame = 0


Query: 13  GPSGYGSKSTAEQVTLFSSXXXXXXXXXLTAIITGATSGIGAETARVLAKRGVKIVMPAR 72
           G SG+ ++STAE+VT             LTAI+TGA+SGIG ET RVLA RGV +VM  R
Sbjct: 8   GASGFSARSTAEEVT------HGIDGTGLTAIVTGASSGIGEETTRVLALRGVHVVMAVR 67

Query: 73  DLKKAAQVKEAIQKESPEAEIIVCEIDLSSLASVQRFCN 112
           +     QV++ I KE P+A+I V ++DLSS+ASV+ F +
Sbjct: 68  NTDSGNQVRDKILKEIPQAKIDVMKLDLSSMASVRSFAS 100

[Close]

BLAST of Bhi02M000372 vs. TrEMBL
Match: tr|A0A1S3CLP7|A0A1S3CLP7_CUCME (short-chain dehydrogenase TIC 32, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103502388 PE=3 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 4.2e-40
Identity = 98/111 (88.29%), Postives = 99/111 (89.19%), Query Frame = 0


Query: 1   MKDTLRYLAGIPGPSGYGSKSTAEQVTLFSSXXXXXXXXXLTAIITGATSGIGAETARVL 60
           MKDTLRYLAGIPGPSGYGSKSTAEQV+LFSS         LTAIITGATSGIGAETARVL
Sbjct: 34  MKDTLRYLAGIPGPSGYGSKSTAEQVSLFSS---SSSSSQLTAIITGATSGIGAETARVL 93

Query: 61  AKRGVKIVMPARDLKKAAQVKEAIQKESPEAEIIVCEIDLSSLASVQRFCN 112
           AKRGVKIVM ARDLKKAAQVKEAIQKESPEAEIIV EIDLSSLASVQ FCN
Sbjct: 94  AKRGVKIVMTARDLKKAAQVKEAIQKESPEAEIIVFEIDLSSLASVQSFCN 141

[Close]

BLAST of Bhi02M000372 vs. TrEMBL
Match: tr|A0A0A0LNV3|A0A0A0LNV3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G004220 PE=3 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 4.8e-36
Identity = 102/120 (85.00%), Postives = 103/120 (85.83%), Query Frame = 0


Query: 1   MKDTLRYLAGIPGPSGYGSKSTAEQVTLFSS---------XXXXXXXXXLTAIITGATSG 60
           MKDTLRYLAGIPGPSGYGSKSTAEQV+LF S         XXXXXXXXX    ITGATSG
Sbjct: 1   MKDTLRYLAGIPGPSGYGSKSTAEQVSLFPSXXXXXXXXXXXXXXXXXXXXXXITGATSG 60

Query: 61  IGAETARVLAKRGVKIVMPARDLKKAAQVKEAIQKESPEAEIIVCEIDLSSLASVQRFCN 112
           IGAETARVLAKRGVKIVM ARDLKKAAQVKEAIQKESPEAEIIV EIDLSSLASVQ FCN
Sbjct: 61  IGAETARVLAKRGVKIVMTARDLKKAAQVKEAIQKESPEAEIIVFEIDLSSLASVQSFCN 120

[Close]

BLAST of Bhi02M000372 vs. TrEMBL
Match: tr|V4SYY5|V4SYY5_9ROSI (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10021085mg PE=3 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 7.7e-34
Identity = 83/111 (74.77%), Postives = 94/111 (84.68%), Query Frame = 0


Query: 1   MKDTLRYLAGIPGPSGYGSKSTAEQVTLFSSXXXXXXXXXLTAIITGATSGIGAETARVL 60
           MK+TLRYLAGI GPSGYGSKSTAEQVT  S          LTAIITGATSGIGAETARVL
Sbjct: 1   MKETLRYLAGIAGPSGYGSKSTAEQVTQGS------VASHLTAIITGATSGIGAETARVL 60

Query: 61  AKRGVKIVMPARDLKKAAQVKEAIQKESPEAEIIVCEIDLSSLASVQRFCN 112
           AKRGV++V+PARDLK+AA+VKE IQ+ESP AE+++ EIDLSSL SVQRFC+
Sbjct: 61  AKRGVRVVIPARDLKRAAEVKEGIQRESPNAEVLLFEIDLSSLVSVQRFCH 105

[Close]

BLAST of Bhi02M000372 vs. TrEMBL
Match: tr|V4TIE0|V4TIE0_9ROSI (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10021085mg PE=3 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 7.7e-34
Identity = 83/111 (74.77%), Postives = 94/111 (84.68%), Query Frame = 0


Query: 1   MKDTLRYLAGIPGPSGYGSKSTAEQVTLFSSXXXXXXXXXLTAIITGATSGIGAETARVL 60
           MK+TLRYLAGI GPSGYGSKSTAEQVT  S          LTAIITGATSGIGAETARVL
Sbjct: 1   MKETLRYLAGIAGPSGYGSKSTAEQVTQGS------VASHLTAIITGATSGIGAETARVL 60

Query: 61  AKRGVKIVMPARDLKKAAQVKEAIQKESPEAEIIVCEIDLSSLASVQRFCN 112
           AKRGV++V+PARDLK+AA+VKE IQ+ESP AE+++ EIDLSSL SVQRFC+
Sbjct: 61  AKRGVRVVIPARDLKRAAEVKEGIQRESPNAEVLLFEIDLSSLVSVQRFCH 105

[Close]

BLAST of Bhi02M000372 vs. TrEMBL
Match: tr|A0A2P6P5P5|A0A2P6P5P5_ROSCH (Putative oxidoreductase OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr7g0192991 PE=3 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 1.7e-33
Identity = 81/111 (72.97%), Postives = 92/111 (82.88%), Query Frame = 0


Query: 1   MKDTLRYLAGIPGPSGYGSKSTAEQVTLFSSXXXXXXXXXLTAIITGATSGIGAETARVL 60
           MK+TL+YLAGI GPSGYGSKSTAEQVT             LTAIITGATSGIGAETARVL
Sbjct: 1   MKETLKYLAGIAGPSGYGSKSTAEQVTQDYCWSSSVPSHRLTAIITGATSGIGAETARVL 60

Query: 61  AKRGVKIVMPARDLKKAAQVKEAIQKESPEAEIIVCEIDLSSLASVQRFCN 112
           AKRGV+IVMPARDL KA++VKE IQ+E+P+AE+I+ EIDLSSL SV RFC+
Sbjct: 61  AKRGVRIVMPARDLAKASKVKEGIQRENPKAEVIIMEIDLSSLTSVNRFCS 111

[Close]

BLAST of Bhi02M000372 vs. NCBI nr
Match: XP_008464537.1 (PREDICTED: short-chain dehydrogenase TIC 32, chloroplastic [Cucumis melo])

HSP 1 Score: 172.9 bits (437), Expect = 6.4e-40
Identity = 98/111 (88.29%), Postives = 99/111 (89.19%), Query Frame = 0


Query: 1   MKDTLRYLAGIPGPSGYGSKSTAEQVTLFSSXXXXXXXXXLTAIITGATSGIGAETARVL 60
           MKDTLRYLAGIPGPSGYGSKSTAEQV+LFSS         LTAIITGATSGIGAETARVL
Sbjct: 34  MKDTLRYLAGIPGPSGYGSKSTAEQVSLFSS---SSSSSQLTAIITGATSGIGAETARVL 93

Query: 61  AKRGVKIVMPARDLKKAAQVKEAIQKESPEAEIIVCEIDLSSLASVQRFCN 112
           AKRGVKIVM ARDLKKAAQVKEAIQKESPEAEIIV EIDLSSLASVQ FCN
Sbjct: 94  AKRGVKIVMTARDLKKAAQVKEAIQKESPEAEIIVFEIDLSSLASVQSFCN 141

[Close]

BLAST of Bhi02M000372 vs. NCBI nr
Match: XP_022921530.1 (short-chain dehydrogenase TIC 32, chloroplastic isoform X1 [Cucurbita moschata])

HSP 1 Score: 170.2 bits (430), Expect = 4.1e-39
Identity = 95/111 (85.59%), Postives = 98/111 (88.29%), Query Frame = 0


Query: 1   MKDTLRYLAGIPGPSGYGSKSTAEQVTLFSSXXXXXXXXXLTAIITGATSGIGAETARVL 60
           MKDTLRYLAGI GPSGYGSKSTAEQVT  SS         LTAIITGATSGIGAETARVL
Sbjct: 17  MKDTLRYLAGIAGPSGYGSKSTAEQVTQCSS---FSSTSQLTAIITGATSGIGAETARVL 76

Query: 61  AKRGVKIVMPARDLKKAAQVKEAIQKESPEAEIIVCEIDLSSLASVQRFCN 112
           AKRGV+IVMPARD+KKAAQVKEAIQ+ESPEAEIIVCEIDLSSLASVQ FCN
Sbjct: 77  AKRGVRIVMPARDMKKAAQVKEAIQRESPEAEIIVCEIDLSSLASVQSFCN 124

[Close]

BLAST of Bhi02M000372 vs. NCBI nr
Match: XP_022988395.1 (short-chain dehydrogenase TIC 32, chloroplastic-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 170.2 bits (430), Expect = 4.1e-39
Identity = 95/111 (85.59%), Postives = 98/111 (88.29%), Query Frame = 0


Query: 1   MKDTLRYLAGIPGPSGYGSKSTAEQVTLFSSXXXXXXXXXLTAIITGATSGIGAETARVL 60
           MKDTLRYLAGI GPSGYGSKSTAEQVT  SS         LTAIITGATSGIGAETARVL
Sbjct: 17  MKDTLRYLAGIAGPSGYGSKSTAEQVTQCSS---FSSTSQLTAIITGATSGIGAETARVL 76

Query: 61  AKRGVKIVMPARDLKKAAQVKEAIQKESPEAEIIVCEIDLSSLASVQRFCN 112
           AKRGV+IVMPARD+KKAAQVKEAIQ+ESPEAEIIVCEIDLSSLASVQ FCN
Sbjct: 77  AKRGVRIVMPARDMKKAAQVKEAIQRESPEAEIIVCEIDLSSLASVQSFCN 124

[Close]

BLAST of Bhi02M000372 vs. NCBI nr
Match: XP_023516084.1 (short-chain dehydrogenase TIC 32, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 168.3 bits (425), Expect = 1.6e-38
Identity = 94/111 (84.68%), Postives = 98/111 (88.29%), Query Frame = 0


Query: 1   MKDTLRYLAGIPGPSGYGSKSTAEQVTLFSSXXXXXXXXXLTAIITGATSGIGAETARVL 60
           MKDTLRYLAGI GPSGYGSKSTAEQVT  SS         LTAIITGATSGIGAETARVL
Sbjct: 17  MKDTLRYLAGIAGPSGYGSKSTAEQVTQCSS---FSSTSQLTAIITGATSGIGAETARVL 76

Query: 61  AKRGVKIVMPARDLKKAAQVKEAIQKESPEAEIIVCEIDLSSLASVQRFCN 112
           AKRGV+IVMPARD+KKAAQVKEAIQ+ESPEAEIIVCEIDLSSLASVQ FC+
Sbjct: 77  AKRGVRIVMPARDMKKAAQVKEAIQRESPEAEIIVCEIDLSSLASVQSFCS 124

[Close]

BLAST of Bhi02M000372 vs. NCBI nr
Match: XP_022134670.1 (short-chain dehydrogenase TIC 32, chloroplastic-like [Momordica charantia])

HSP 1 Score: 166.8 bits (421), Expect = 4.6e-38
Identity = 92/111 (82.88%), Postives = 95/111 (85.59%), Query Frame = 0


Query: 1   MKDTLRYLAGIPGPSGYGSKSTAEQVTLFSSXXXXXXXXXLTAIITGATSGIGAETARVL 60
           MK+TLRYLAGI GPSGYGS STAEQVT   S         LTAIITGATSGIGAETARVL
Sbjct: 15  MKETLRYLAGIAGPSGYGSNSTAEQVTQNYSISSSSTSHPLTAIITGATSGIGAETARVL 74

Query: 61  AKRGVKIVMPARDLKKAAQVKEAIQKESPEAEIIVCEIDLSSLASVQRFCN 112
           AKRGV+IVM ARDLKKAAQVKE IQKE+PEAEIIVCEIDLSSLASVQRFCN
Sbjct: 75  AKRGVRIVMAARDLKKAAQVKEGIQKETPEAEIIVCEIDLSSLASVQRFCN 125

The following BLAST results are available for this feature:

BLAST of Bhi02M000372 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|A2RVM0\|TIC32_ARATH	4.4e-16	47.27	Short-chain dehydrogenase TIC 32, chloroplastic OS=Arabidopsis thaliana OX=3702 ...	[more]
sp\|Q6RVV4\|TIC32_PEA	3.7e-15	46.73	Short-chain dehydrogenase TIC 32, chloroplastic OS=Pisum sativum OX=3888 GN=TIC3...	[more]
sp\|P59837\|RDH12_BOVIN	2.9e-07	39.13	Retinol dehydrogenase 12 OS=Bos taurus OX=9913 GN=RDH12 PE=2 SV=1	[more]
sp\|Q8TC12\|RDH11_HUMAN	8.3e-07	37.68	Retinol dehydrogenase 11 OS=Homo sapiens OX=9606 GN=RDH11 PE=1 SV=2	[more]
sp\|Q96NR8\|RDH12_HUMAN	1.8e-06	37.68	Retinol dehydrogenase 12 OS=Homo sapiens OX=9606 GN=RDH12 PE=1 SV=3	[more]

BLAST of Bhi02M000372 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G50130.1	1.2e-32	68.47	NAD(P)-binding Rossmann-fold superfamily protein	[more]
AT1G64590.1	1.9e-25	58.72	NAD(P)-binding Rossmann-fold superfamily protein	[more]
AT4G24050.1	7.1e-25	55.96	NAD(P)-binding Rossmann-fold superfamily protein	[more]
AT4G23430.2	2.4e-17	47.27	NAD(P)-binding Rossmann-fold superfamily protein	[more]
AT4G11410.1	2.1e-16	49.49	NAD(P)-binding Rossmann-fold superfamily protein	[more]

BLAST of Bhi02M000372 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CLP7\|A0A1S3CLP7_CUCME	4.2e-40	88.29	short-chain dehydrogenase TIC 32, chloroplastic OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A0A0LNV3\|A0A0A0LNV3_CUCSA	4.8e-36	85.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G004220 PE=3 SV=1	[more]
tr\|V4SYY5\|V4SYY5_9ROSI	7.7e-34	74.77	Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10021085mg PE=3 ...	[more]
tr\|V4TIE0\|V4TIE0_9ROSI	7.7e-34	74.77	Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10021085mg PE=3 ...	[more]
tr\|A0A2P6P5P5\|A0A2P6P5P5_ROSCH	1.7e-33	72.97	Putative oxidoreductase OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr7g0192991 PE=3...	[more]

BLAST of Bhi02M000372 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008464537.1	6.4e-40	88.29	PREDICTED: short-chain dehydrogenase TIC 32, chloroplastic [Cucumis melo]	[more]
XP_022921530.1	4.1e-39	85.59	short-chain dehydrogenase TIC 32, chloroplastic isoform X1 [Cucurbita moschata]	[more]
XP_022988395.1	4.1e-39	85.59	short-chain dehydrogenase TIC 32, chloroplastic-like isoform X1 [Cucurbita maxim...	[more]
XP_023516084.1	1.6e-38	84.68	short-chain dehydrogenase TIC 32, chloroplastic-like [Cucurbita pepo subsp. pepo...	[more]
XP_022134670.1	4.6e-38	82.88	short-chain dehydrogenase TIC 32, chloroplastic-like [Momordica charantia]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR036291	NAD(P)-bd_dom_sf
IPR002347	SDR_fam

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Bhi02G000372	Bhi02G000372	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Bhi02M000372.exon2	Bhi02M000372.exon2	exon
Bhi02M000372.exon1	Bhi02M000372.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.Bhi02M000372	cds.Bhi02M000372	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Bhi02M000372	Bhi02M000372-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	G3DSA:3.40.50.720		coord: 28..119 e-value: 7.7E-20 score: 73.0
None	No IPR available	PANTHER	PTHR24320:SF120	RIBITOL DEHYDROGENASE-LIKE	coord: 6..112
None	No IPR available	PANTHER	PTHR24320	FAMILY NOT NAMED	coord: 6..112
IPR002347	Short-chain dehydrogenase/reductase SDR	PFAM	PF00106	adh_short	coord: 42..113 e-value: 1.9E-13 score: 50.2
IPR036291	NAD(P)-binding domain superfamily	SUPERFAMILY	SSF51735	NAD(P)-binding Rossmann-fold domains	coord: 38..113