Bhi02G000372 (gene) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi02G000372
Type	gene
Organism	Benincasa hispida (Wax gourd)
Description	short-chain dehydrogenase TIC 32, chloroplastic
Location	chr2 : 9480365 .. 9481466 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGGATACTCTTAGATACTTGGCAGGAATTCCAGGCCCCAGTGGCTATGGCTCCAAATCCACTGCTGAACAAGTCACTCTATTTTCTTCTTCTTCTTCTTCCACTTCTACTTCTCAACTTACTGCCATTATTACTGGTAATTATAATTTTCATCTATTTTCTTCTTATTTTTCTCAATTATATTCTCTCTGTTTTTTCTTGTCTGCATGGAGCCTTCTAAATTAATTTCCTTGGGCTTTGATAATTTCATCATTTTCTTGCCTCCAATGAGTTTATCATTATGTGTAATTCTTGAACTTTTGAAATTTAAAATCCTTCTGCTCTTGAATTTTGGAGAATCATATATACACTGCTAAATTGGGTTATATATTCTTAATTATTCTTCACAATATATTAAGTTCAATTTGTCATTGACCATTGAGAGTTTTAGTGATTTCTTCAGGGTTTTGCATGCATTCAATATTTCTCCTCTCTCTCTCTCTCTCAAGAGAAGTTCAAAAAGGCTAATTCTTTTTTGAGATTTGGGAAATGGGATTAGTCGAGGAGCGCTTAAGTTAGGCTCGTACACTCATATATATAAAAAAAATAAAAAATAAAAATTTGGGAAGTAGGATTTATTATTGTTATTATTATTTTATGGGAACATCTGTTCTTCATTTGAGGCTCTCATATCAATAGCAGAGATATGGTTTTGTCACTTTTCAGATTGTATTTTGGATCAACACTCATCTATGTATATATAGCAGCTTTCTGGACCACACATCAAAAGAATATATATGTTTGTGTGTGTAAATTAAAATTTTACTCAAATTATTATACATAATTAAAGTGGAGGAAATTGAAAAAACAATTTATTTTTGATTATTGAAAATTAGGGGCAACATCAGGAATTGGGGCAGAAACAGCAAGGGTATTGGCAAAGAGAGGAGTGAAAATAGTGATGCCAGCAAGAGACTTGAAAAAAGCAGCTCAAGTAAAAGAAGCAATTCAAAAGGAAAGCCCTGAGGCTGAGATTATTGTGTGTGAGATTGATCTCAGTTCATTGGCTTCTGTCCAAAGATTCTGTAATGGAGTTTCTTGCTCTTGGACTCCCACTTAA

mRNA sequence

ATGAAGGATACTCTTAGATACTTGGCAGGAATTCCAGGCCCCAGTGGCTATGGCTCCAAATCCACTGCTGAACAAGTCACTCTATTTTCTTCTTCTTCTTCTTCCACTTCTACTTCTCAACTTACTGCCATTATTACTGGGGCAACATCAGGAATTGGGGCAGAAACAGCAAGGGTATTGGCAAAGAGAGGAGTGAAAATAGTGATGCCAGCAAGAGACTTGAAAAAAGCAGCTCAAGTAAAAGAAGCAATTCAAAAGGAAAGCCCTGAGGCTGAGATTATTGTGTGTGAGATTGATCTCAGTTCATTGGCTTCTGTCCAAAGATTCTGTAATGGAGTTTCTTGCTCTTGGACTCCCACTTAA

Coding sequence (CDS)

ATGAAGGATACTCTTAGATACTTGGCAGGAATTCCAGGCCCCAGTGGCTATGGCTCCAAATCCACTGCTGAACAAGTCACTCTATTTTCTTCTTCTTCTTCTTCCACTTCTACTTCTCAACTTACTGCCATTATTACTGGGGCAACATCAGGAATTGGGGCAGAAACAGCAAGGGTATTGGCAAAGAGAGGAGTGAAAATAGTGATGCCAGCAAGAGACTTGAAAAAAGCAGCTCAAGTAAAAGAAGCAATTCAAAAGGAAAGCCCTGAGGCTGAGATTATTGTGTGTGAGATTGATCTCAGTTCATTGGCTTCTGTCCAAAGATTCTGTAATGGAGTTTCTTGCTCTTGGACTCCCACTTAA

Protein sequence

MKDTLRYLAGIPGPSGYGSKSTAEQVTLFSSSSSSTSTSQLTAIITGATSGIGAETARVLAKRGVKIVMPARDLKKAAQVKEAIQKESPEAEIIVCEIDLSSLASVQRFCNGVSCSWTPT

Homology

[Close]

BLAST of Bhi02G000372 vs. Swiss-Prot
Match: sp|A2RVM0|TIC32_ARATH (Short-chain dehydrogenase TIC 32, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=TIC32 PE=2 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 4.4e-16
Identity = 52/110 (47.27%), Postives = 70/110 (63.64%), Query Frame = 0


Query: 10  GIPGPSGYGSKSTAEQVTLFSSXXXXXXXXXLTAIITGATSGIGAETARVLAKRGVKIVM 69
           G  G SG+ S+STAE+VT             LTAI+TGA+SGIG ETARVL+ RGV +VM
Sbjct: 5   GSKGASGFSSRSTAEEVT------HGVDGTGLTAIVTGASSGIGVETARVLSLRGVHVVM 64

Query: 70  PARDLKKAAQVKEAIQKESPEAEIIVCEIDLSSLASVQRFCNGVSCSWTP 120
             R+    A+VKE I K+ P A++ V E+DLSS+ SV++F +    +  P
Sbjct: 65  AVRNTDSGAKVKEDIVKQVPGAKLDVMELDLSSMQSVRKFASEYKSTGLP 108

[Close]

BLAST of Bhi02G000372 vs. Swiss-Prot
Match: sp|Q6RVV4|TIC32_PEA (Short-chain dehydrogenase TIC 32, chloroplastic OS=Pisum sativum OX=3888 GN=TIC32 PE=1 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 3.7e-15
Identity = 50/107 (46.73%), Postives = 66/107 (61.68%), Query Frame = 0


Query: 13  GPSGYGSKSTAEQVTLFSSXXXXXXXXXLTAIITGATSGIGAETARVLAKRGVKIVMPAR 72
           G SG+   STAEQVT             LTAI+TGA+SGIGAET RVLA RG  ++M  R
Sbjct: 9   GVSGFSGSSTAEQVT------HGIDATGLTAIVTGASSGIGAETTRVLALRGAHVIMGVR 68

Query: 73  DLKKAAQVKEAIQKESPEAEIIVCEIDLSSLASVQRFCNGVSCSWTP 120
           ++  A  VK+ I K+ P A++   E+DLSSL SV++F +  + S  P
Sbjct: 69  NMVAAKDVKDTILKDIPSAKVDAIELDLSSLDSVKKFASEFNSSGRP 109

[Close]

BLAST of Bhi02G000372 vs. Swiss-Prot
Match: sp|P59837|RDH12_BOVIN (Retinol dehydrogenase 12 OS=Bos taurus OX=9913 GN=RDH12 PE=2 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 2.9e-07
Identity = 27/69 (39.13%), Postives = 44/69 (63.77%), Query Frame = 0


Query: 44  IITGATSGIGAETARVLAKRGVKIVMPARDLKKAAQVKEAIQKESPEAEIIVCEIDLSSL 103
           +ITGA +GIG ETAR LA+RG ++ +  RD+ K       IQ ++  ++++V ++DLS  
Sbjct: 43  VITGANTGIGKETARELARRGARVYIACRDVLKGESAASEIQADTKNSQVLVRKLDLSDT 102

Query: 104 ASVQRFCNG 113
            S++ F  G
Sbjct: 103 KSIRAFAEG 111

[Close]

BLAST of Bhi02G000372 vs. Swiss-Prot
Match: sp|Q8TC12|RDH11_HUMAN (Retinol dehydrogenase 11 OS=Homo sapiens OX=9606 GN=RDH11 PE=1 SV=2)

HSP 1 Score: 54.7 bits (130), Expect = 8.3e-07
Identity = 26/69 (37.68%), Postives = 45/69 (65.22%), Query Frame = 0


Query: 44  IITGATSGIGAETARVLAKRGVKIVMPARDLKKAAQVKEAIQKESPEAEIIVCEIDLSSL 103
           ++TGA +GIG ETA+ LA+RG ++ +  RD++K   V + IQ  +   +++V ++DLS  
Sbjct: 45  VVTGANTGIGKETAKELAQRGARVYLACRDVEKGELVAKEIQTTTGNQQVLVRKLDLSDT 104

Query: 104 ASVQRFCNG 113
            S++ F  G
Sbjct: 105 KSIRAFAKG 113

[Close]

BLAST of Bhi02G000372 vs. Swiss-Prot
Match: sp|Q96NR8|RDH12_HUMAN (Retinol dehydrogenase 12 OS=Homo sapiens OX=9606 GN=RDH12 PE=1 SV=3)

HSP 1 Score: 53.5 bits (127), Expect = 1.8e-06
Identity = 26/69 (37.68%), Postives = 43/69 (62.32%), Query Frame = 0


Query: 44  IITGATSGIGAETARVLAKRGVKIVMPARDLKKAAQVKEAIQKESPEAEIIVCEIDLSSL 103
           +ITGA +GIG ETAR LA RG ++ +  RD+ K       I+ ++  ++++V ++DLS  
Sbjct: 43  VITGANTGIGKETARELASRGARVYIACRDVLKGESAASEIRVDTKNSQVLVRKLDLSDT 102

Query: 104 ASVQRFCNG 113
            S++ F  G
Sbjct: 103 KSIRAFAEG 111

[Close]

BLAST of Bhi02G000372 vs. TAIR10
Match: AT5G50130.1 (NAD(P)-binding Rossmann-fold superfamily protein)

HSP 1 Score: 136.3 bits (342), Expect = 1.2e-32
Identity = 76/111 (68.47%), Postives = 88/111 (79.28%), Query Frame = 0


Query: 1   MKDTLRYLAGIPGPSGYGSKSTAEQVTLFSSXXXXXXXXXLTAIITGATSGIGAETARVL 60
           MK TLRYLAGI GP+G+GS+STAEQVT  S          LTAIITG TSGIGAETARVL
Sbjct: 1   MKGTLRYLAGIAGPNGFGSRSTAEQVTQHS----FFPCSHLTAIITGGTSGIGAETARVL 60

Query: 61  AKRGVKIVMPARDLKKAAQVKEAIQKESPEAEIIVCEIDLSSLASVQRFCN 112
           AKRGV++VM  RD+KKA  VKE I +E+PEA+II+ EIDLSSL+SV RFC+
Sbjct: 61  AKRGVRVVMAVRDMKKAEMVKERIIRENPEADIILFEIDLSSLSSVARFCS 107

[Close]

BLAST of Bhi02G000372 vs. TAIR10
Match: AT1G64590.1 (NAD(P)-binding Rossmann-fold superfamily protein)

HSP 1 Score: 112.5 bits (280), Expect = 1.9e-25
Identity = 64/109 (58.72%), Postives = 79/109 (72.48%), Query Frame = 0


Query: 1   MKDTLRYLAGIPGPSGYGSKSTAEQVTLFSSXXXXXXXXXLTAIITGATSGIGAETARVL 60
           M +T+++L G  GPSG+GS+STA+ VT  S          LTAIITGATSGIGAETARVL
Sbjct: 1   MIETVKHLIGSGGPSGFGSRSTADHVTCNSD------LRSLTAIITGATSGIGAETARVL 60

Query: 61  AKRGVKIVMPARDLKKAAQVKEAIQKESPEAEIIVCEIDLSSLASVQRF 110
           AKRG ++V+PAR +K A + K  I  E P+AEIIV  +DLSSL SV+RF
Sbjct: 61  AKRGARLVLPARSVKTAEETKARILSEFPDAEIIVMHLDLSSLTSVRRF 103

[Close]

BLAST of Bhi02G000372 vs. TAIR10
Match: AT4G24050.1 (NAD(P)-binding Rossmann-fold superfamily protein)

HSP 1 Score: 110.5 bits (275), Expect = 7.1e-25
Identity = 61/109 (55.96%), Postives = 78/109 (71.56%), Query Frame = 0


Query: 1   MKDTLRYLAGIPGPSGYGSKSTAEQVTLFSSXXXXXXXXXLTAIITGATSGIGAETARVL 60
           M +T +YL G  G SG+GSKSTAE+VT             +TA+ITGATSGIGAETARVL
Sbjct: 1   MIETGKYLLGAAGASGFGSKSTAEEVT------ENCDLRSITAVITGATSGIGAETARVL 60

Query: 61  AKRGVKIVMPARDLKKAAQVKEAIQKESPEAEIIVCEIDLSSLASVQRF 110
           AKRG +++ PAR++K A + KE I  E PE EI+V ++DLSS+ASV+ F
Sbjct: 61  AKRGARLIFPARNVKAAEEAKERIVSEFPETEIVVMKLDLSSIASVRNF 103

[Close]

BLAST of Bhi02G000372 vs. TAIR10
Match: AT4G23430.2 (NAD(P)-binding Rossmann-fold superfamily protein)

HSP 1 Score: 85.5 bits (210), Expect = 2.4e-17
Identity = 52/110 (47.27%), Postives = 70/110 (63.64%), Query Frame = 0


Query: 10  GIPGPSGYGSKSTAEQVTLFSSXXXXXXXXXLTAIITGATSGIGAETARVLAKRGVKIVM 69
           G  G SG+ S+STAE+VT             LTAI+TGA+SGIG ETARVL+ RGV +VM
Sbjct: 5   GSKGASGFSSRSTAEEVT------HGVDGTGLTAIVTGASSGIGVETARVLSLRGVHVVM 64

Query: 70  PARDLKKAAQVKEAIQKESPEAEIIVCEIDLSSLASVQRFCNGVSCSWTP 120
             R+    A+VKE I K+ P A++ V E+DLSS+ SV++F +    +  P
Sbjct: 65  AVRNTDSGAKVKEDIVKQVPGAKLDVMELDLSSMQSVRKFASEYKSTGLP 108

[Close]

BLAST of Bhi02G000372 vs. TAIR10
Match: AT4G11410.1 (NAD(P)-binding Rossmann-fold superfamily protein)

HSP 1 Score: 82.4 bits (202), Expect = 2.1e-16
Identity = 49/99 (49.49%), Postives = 66/99 (66.67%), Query Frame = 0


Query: 13  GPSGYGSKSTAEQVTLFSSXXXXXXXXXLTAIITGATSGIGAETARVLAKRGVKIVMPAR 72
           G SG+ ++STAE+VT             LTAI+TGA+SGIG ET RVLA RGV +VM  R
Sbjct: 8   GASGFSARSTAEEVT------HGIDGTGLTAIVTGASSGIGEETTRVLALRGVHVVMAVR 67

Query: 73  DLKKAAQVKEAIQKESPEAEIIVCEIDLSSLASVQRFCN 112
           +     QV++ I KE P+A+I V ++DLSS+ASV+ F +
Sbjct: 68  NTDSGNQVRDKILKEIPQAKIDVMKLDLSSMASVRSFAS 100

[Close]

BLAST of Bhi02G000372 vs. TrEMBL
Match: tr|A0A1S3CLP7|A0A1S3CLP7_CUCME (short-chain dehydrogenase TIC 32, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103502388 PE=3 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 4.2e-40
Identity = 98/111 (88.29%), Postives = 99/111 (89.19%), Query Frame = 0


Query: 1   MKDTLRYLAGIPGPSGYGSKSTAEQVTLFSSXXXXXXXXXLTAIITGATSGIGAETARVL 60
           MKDTLRYLAGIPGPSGYGSKSTAEQV+LFSS         LTAIITGATSGIGAETARVL
Sbjct: 34  MKDTLRYLAGIPGPSGYGSKSTAEQVSLFSS---SSSSSQLTAIITGATSGIGAETARVL 93

Query: 61  AKRGVKIVMPARDLKKAAQVKEAIQKESPEAEIIVCEIDLSSLASVQRFCN 112
           AKRGVKIVM ARDLKKAAQVKEAIQKESPEAEIIV EIDLSSLASVQ FCN
Sbjct: 94  AKRGVKIVMTARDLKKAAQVKEAIQKESPEAEIIVFEIDLSSLASVQSFCN 141

[Close]

BLAST of Bhi02G000372 vs. TrEMBL
Match: tr|A0A0A0LNV3|A0A0A0LNV3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G004220 PE=3 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 4.8e-36
Identity = 102/120 (85.00%), Postives = 103/120 (85.83%), Query Frame = 0


Query: 1   MKDTLRYLAGIPGPSGYGSKSTAEQVTLFSS---------XXXXXXXXXLTAIITGATSG 60
           MKDTLRYLAGIPGPSGYGSKSTAEQV+LF S         XXXXXXXXX    ITGATSG
Sbjct: 1   MKDTLRYLAGIPGPSGYGSKSTAEQVSLFPSXXXXXXXXXXXXXXXXXXXXXXITGATSG 60

Query: 61  IGAETARVLAKRGVKIVMPARDLKKAAQVKEAIQKESPEAEIIVCEIDLSSLASVQRFCN 112
           IGAETARVLAKRGVKIVM ARDLKKAAQVKEAIQKESPEAEIIV EIDLSSLASVQ FCN
Sbjct: 61  IGAETARVLAKRGVKIVMTARDLKKAAQVKEAIQKESPEAEIIVFEIDLSSLASVQSFCN 120

[Close]

BLAST of Bhi02G000372 vs. TrEMBL
Match: tr|V4SYY5|V4SYY5_9ROSI (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10021085mg PE=3 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 7.7e-34
Identity = 83/111 (74.77%), Postives = 94/111 (84.68%), Query Frame = 0


Query: 1   MKDTLRYLAGIPGPSGYGSKSTAEQVTLFSSXXXXXXXXXLTAIITGATSGIGAETARVL 60
           MK+TLRYLAGI GPSGYGSKSTAEQVT  S          LTAIITGATSGIGAETARVL
Sbjct: 1   MKETLRYLAGIAGPSGYGSKSTAEQVTQGS------VASHLTAIITGATSGIGAETARVL 60

Query: 61  AKRGVKIVMPARDLKKAAQVKEAIQKESPEAEIIVCEIDLSSLASVQRFCN 112
           AKRGV++V+PARDLK+AA+VKE IQ+ESP AE+++ EIDLSSL SVQRFC+
Sbjct: 61  AKRGVRVVIPARDLKRAAEVKEGIQRESPNAEVLLFEIDLSSLVSVQRFCH 105

[Close]

BLAST of Bhi02G000372 vs. TrEMBL
Match: tr|V4TIE0|V4TIE0_9ROSI (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10021085mg PE=3 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 7.7e-34
Identity = 83/111 (74.77%), Postives = 94/111 (84.68%), Query Frame = 0


Query: 1   MKDTLRYLAGIPGPSGYGSKSTAEQVTLFSSXXXXXXXXXLTAIITGATSGIGAETARVL 60
           MK+TLRYLAGI GPSGYGSKSTAEQVT  S          LTAIITGATSGIGAETARVL
Sbjct: 1   MKETLRYLAGIAGPSGYGSKSTAEQVTQGS------VASHLTAIITGATSGIGAETARVL 60

Query: 61  AKRGVKIVMPARDLKKAAQVKEAIQKESPEAEIIVCEIDLSSLASVQRFCN 112
           AKRGV++V+PARDLK+AA+VKE IQ+ESP AE+++ EIDLSSL SVQRFC+
Sbjct: 61  AKRGVRVVIPARDLKRAAEVKEGIQRESPNAEVLLFEIDLSSLVSVQRFCH 105

[Close]

BLAST of Bhi02G000372 vs. TrEMBL
Match: tr|A0A2P6P5P5|A0A2P6P5P5_ROSCH (Putative oxidoreductase OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr7g0192991 PE=3 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 1.7e-33
Identity = 81/111 (72.97%), Postives = 92/111 (82.88%), Query Frame = 0


Query: 1   MKDTLRYLAGIPGPSGYGSKSTAEQVTLFSSXXXXXXXXXLTAIITGATSGIGAETARVL 60
           MK+TL+YLAGI GPSGYGSKSTAEQVT             LTAIITGATSGIGAETARVL
Sbjct: 1   MKETLKYLAGIAGPSGYGSKSTAEQVTQDYCWSSSVPSHRLTAIITGATSGIGAETARVL 60

Query: 61  AKRGVKIVMPARDLKKAAQVKEAIQKESPEAEIIVCEIDLSSLASVQRFCN 112
           AKRGV+IVMPARDL KA++VKE IQ+E+P+AE+I+ EIDLSSL SV RFC+
Sbjct: 61  AKRGVRIVMPARDLAKASKVKEGIQRENPKAEVIIMEIDLSSLTSVNRFCS 111

[Close]

BLAST of Bhi02G000372 vs. NCBI nr
Match: XP_008464537.1 (PREDICTED: short-chain dehydrogenase TIC 32, chloroplastic [Cucumis melo])

HSP 1 Score: 172.9 bits (437), Expect = 6.4e-40
Identity = 98/111 (88.29%), Postives = 99/111 (89.19%), Query Frame = 0


Query: 1   MKDTLRYLAGIPGPSGYGSKSTAEQVTLFSSXXXXXXXXXLTAIITGATSGIGAETARVL 60
           MKDTLRYLAGIPGPSGYGSKSTAEQV+LFSS         LTAIITGATSGIGAETARVL
Sbjct: 34  MKDTLRYLAGIPGPSGYGSKSTAEQVSLFSS---SSSSSQLTAIITGATSGIGAETARVL 93

Query: 61  AKRGVKIVMPARDLKKAAQVKEAIQKESPEAEIIVCEIDLSSLASVQRFCN 112
           AKRGVKIVM ARDLKKAAQVKEAIQKESPEAEIIV EIDLSSLASVQ FCN
Sbjct: 94  AKRGVKIVMTARDLKKAAQVKEAIQKESPEAEIIVFEIDLSSLASVQSFCN 141

[Close]

BLAST of Bhi02G000372 vs. NCBI nr
Match: XP_022921530.1 (short-chain dehydrogenase TIC 32, chloroplastic isoform X1 [Cucurbita moschata])

HSP 1 Score: 170.2 bits (430), Expect = 4.1e-39
Identity = 95/111 (85.59%), Postives = 98/111 (88.29%), Query Frame = 0


Query: 1   MKDTLRYLAGIPGPSGYGSKSTAEQVTLFSSXXXXXXXXXLTAIITGATSGIGAETARVL 60
           MKDTLRYLAGI GPSGYGSKSTAEQVT  SS         LTAIITGATSGIGAETARVL
Sbjct: 17  MKDTLRYLAGIAGPSGYGSKSTAEQVTQCSS---FSSTSQLTAIITGATSGIGAETARVL 76

Query: 61  AKRGVKIVMPARDLKKAAQVKEAIQKESPEAEIIVCEIDLSSLASVQRFCN 112
           AKRGV+IVMPARD+KKAAQVKEAIQ+ESPEAEIIVCEIDLSSLASVQ FCN
Sbjct: 77  AKRGVRIVMPARDMKKAAQVKEAIQRESPEAEIIVCEIDLSSLASVQSFCN 124

[Close]

BLAST of Bhi02G000372 vs. NCBI nr
Match: XP_022988395.1 (short-chain dehydrogenase TIC 32, chloroplastic-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 170.2 bits (430), Expect = 4.1e-39
Identity = 95/111 (85.59%), Postives = 98/111 (88.29%), Query Frame = 0


Query: 1   MKDTLRYLAGIPGPSGYGSKSTAEQVTLFSSXXXXXXXXXLTAIITGATSGIGAETARVL 60
           MKDTLRYLAGI GPSGYGSKSTAEQVT  SS         LTAIITGATSGIGAETARVL
Sbjct: 17  MKDTLRYLAGIAGPSGYGSKSTAEQVTQCSS---FSSTSQLTAIITGATSGIGAETARVL 76

Query: 61  AKRGVKIVMPARDLKKAAQVKEAIQKESPEAEIIVCEIDLSSLASVQRFCN 112
           AKRGV+IVMPARD+KKAAQVKEAIQ+ESPEAEIIVCEIDLSSLASVQ FCN
Sbjct: 77  AKRGVRIVMPARDMKKAAQVKEAIQRESPEAEIIVCEIDLSSLASVQSFCN 124

[Close]

BLAST of Bhi02G000372 vs. NCBI nr
Match: XP_023516084.1 (short-chain dehydrogenase TIC 32, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 168.3 bits (425), Expect = 1.6e-38
Identity = 94/111 (84.68%), Postives = 98/111 (88.29%), Query Frame = 0


Query: 1   MKDTLRYLAGIPGPSGYGSKSTAEQVTLFSSXXXXXXXXXLTAIITGATSGIGAETARVL 60
           MKDTLRYLAGI GPSGYGSKSTAEQVT  SS         LTAIITGATSGIGAETARVL
Sbjct: 17  MKDTLRYLAGIAGPSGYGSKSTAEQVTQCSS---FSSTSQLTAIITGATSGIGAETARVL 76

Query: 61  AKRGVKIVMPARDLKKAAQVKEAIQKESPEAEIIVCEIDLSSLASVQRFCN 112
           AKRGV+IVMPARD+KKAAQVKEAIQ+ESPEAEIIVCEIDLSSLASVQ FC+
Sbjct: 77  AKRGVRIVMPARDMKKAAQVKEAIQRESPEAEIIVCEIDLSSLASVQSFCS 124

[Close]

BLAST of Bhi02G000372 vs. NCBI nr
Match: XP_022134670.1 (short-chain dehydrogenase TIC 32, chloroplastic-like [Momordica charantia])

HSP 1 Score: 166.8 bits (421), Expect = 4.6e-38
Identity = 92/111 (82.88%), Postives = 95/111 (85.59%), Query Frame = 0


Query: 1   MKDTLRYLAGIPGPSGYGSKSTAEQVTLFSSXXXXXXXXXLTAIITGATSGIGAETARVL 60
           MK+TLRYLAGI GPSGYGS STAEQVT   S         LTAIITGATSGIGAETARVL
Sbjct: 15  MKETLRYLAGIAGPSGYGSNSTAEQVTQNYSISSSSTSHPLTAIITGATSGIGAETARVL 74

Query: 61  AKRGVKIVMPARDLKKAAQVKEAIQKESPEAEIIVCEIDLSSLASVQRFCN 112
           AKRGV+IVM ARDLKKAAQVKE IQKE+PEAEIIVCEIDLSSLASVQRFCN
Sbjct: 75  AKRGVRIVMAARDLKKAAQVKEGIQKETPEAEIIVCEIDLSSLASVQRFCN 125

The following BLAST results are available for this feature:

BLAST of Bhi02G000372 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|A2RVM0\|TIC32_ARATH	4.4e-16	47.27	Short-chain dehydrogenase TIC 32, chloroplastic OS=Arabidopsis thaliana OX=3702 ...	[more]
sp\|Q6RVV4\|TIC32_PEA	3.7e-15	46.73	Short-chain dehydrogenase TIC 32, chloroplastic OS=Pisum sativum OX=3888 GN=TIC3...	[more]
sp\|P59837\|RDH12_BOVIN	2.9e-07	39.13	Retinol dehydrogenase 12 OS=Bos taurus OX=9913 GN=RDH12 PE=2 SV=1	[more]
sp\|Q8TC12\|RDH11_HUMAN	8.3e-07	37.68	Retinol dehydrogenase 11 OS=Homo sapiens OX=9606 GN=RDH11 PE=1 SV=2	[more]
sp\|Q96NR8\|RDH12_HUMAN	1.8e-06	37.68	Retinol dehydrogenase 12 OS=Homo sapiens OX=9606 GN=RDH12 PE=1 SV=3	[more]

BLAST of Bhi02G000372 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G50130.1	1.2e-32	68.47	NAD(P)-binding Rossmann-fold superfamily protein	[more]
AT1G64590.1	1.9e-25	58.72	NAD(P)-binding Rossmann-fold superfamily protein	[more]
AT4G24050.1	7.1e-25	55.96	NAD(P)-binding Rossmann-fold superfamily protein	[more]
AT4G23430.2	2.4e-17	47.27	NAD(P)-binding Rossmann-fold superfamily protein	[more]
AT4G11410.1	2.1e-16	49.49	NAD(P)-binding Rossmann-fold superfamily protein	[more]

BLAST of Bhi02G000372 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CLP7\|A0A1S3CLP7_CUCME	4.2e-40	88.29	short-chain dehydrogenase TIC 32, chloroplastic OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A0A0LNV3\|A0A0A0LNV3_CUCSA	4.8e-36	85.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G004220 PE=3 SV=1	[more]
tr\|V4SYY5\|V4SYY5_9ROSI	7.7e-34	74.77	Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10021085mg PE=3 ...	[more]
tr\|V4TIE0\|V4TIE0_9ROSI	7.7e-34	74.77	Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10021085mg PE=3 ...	[more]
tr\|A0A2P6P5P5\|A0A2P6P5P5_ROSCH	1.7e-33	72.97	Putative oxidoreductase OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr7g0192991 PE=3...	[more]

BLAST of Bhi02G000372 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008464537.1	6.4e-40	88.29	PREDICTED: short-chain dehydrogenase TIC 32, chloroplastic [Cucumis melo]	[more]
XP_022921530.1	4.1e-39	85.59	short-chain dehydrogenase TIC 32, chloroplastic isoform X1 [Cucurbita moschata]	[more]
XP_022988395.1	4.1e-39	85.59	short-chain dehydrogenase TIC 32, chloroplastic-like isoform X1 [Cucurbita maxim...	[more]
XP_023516084.1	1.6e-38	84.68	short-chain dehydrogenase TIC 32, chloroplastic-like [Cucurbita pepo subsp. pepo...	[more]
XP_022134670.1	4.6e-38	82.88	short-chain dehydrogenase TIC 32, chloroplastic-like [Momordica charantia]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR036291	NAD(P)-bd_dom_sf
IPR002347	SDR_fam

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0055114	oxidation-reduction process
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0016491	oxidoreductase activity
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi02M000372	Bhi02M000372	mRNA

InterPro

Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	G3DSA:3.40.50.720		coord: 28..119 e-value: 7.7E-20 score: 73.0
None	No IPR available	PANTHER	PTHR24320:SF120	RIBITOL DEHYDROGENASE-LIKE	coord: 6..112
None	No IPR available	PANTHER	PTHR24320	FAMILY NOT NAMED	coord: 6..112
IPR002347	Short-chain dehydrogenase/reductase SDR	PFAM	PF00106	adh_short	coord: 42..113 e-value: 1.9E-13 score: 50.2
IPR036291	NAD(P)-binding domain superfamily	SUPERFAMILY	SSF51735	NAD(P)-binding Rossmann-fold domains	coord: 38..113

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Bhi02G000372	Cucsa.196660	Cucumber (Gy14) v1	cgywgoB417
Bhi02G000372	CsGy1G001230	Cucumber (Gy14) v2	cgybwgoB092

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Bhi02G000372	Wax gourd	wgowgoB123
Bhi02G000372	Cucumber (Gy14) v1	cgywgoB143
Bhi02G000372	Cucumber (Gy14) v2	cgybwgoB089
Bhi02G000372	Cucurbita maxima (Rimu)	cmawgoB0088
Bhi02G000372	Cucurbita maxima (Rimu)	cmawgoB0167
Bhi02G000372	Cucurbita maxima (Rimu)	cmawgoB0287
Bhi02G000372	Cucurbita maxima (Rimu)	cmawgoB0549
Bhi02G000372	Cucurbita moschata (Rifu)	cmowgoB0081
Bhi02G000372	Cucurbita moschata (Rifu)	cmowgoB0160
Bhi02G000372	Cucurbita moschata (Rifu)	cmowgoB0277
Bhi02G000372	Cucurbita moschata (Rifu)	cmowgoB0548
Bhi02G000372	Cucurbita pepo (Zucchini)	cpewgoB0459
Bhi02G000372	Cucurbita pepo (Zucchini)	cpewgoB0883
Bhi02G000372	Wild cucumber (PI 183967)	cpiwgoB095
Bhi02G000372	Wild cucumber (PI 183967)	cpiwgoB098
Bhi02G000372	Cucumber (Chinese Long) v3	cucwgoB100
Bhi02G000372	Cucumber (Chinese Long) v3	cucwgoB103
Bhi02G000372	Cucumber (Chinese Long) v2	cuwgoB095
Bhi02G000372	Bottle gourd (USVL1VR-Ls)	lsiwgoB288
Bhi02G000372	Bottle gourd (USVL1VR-Ls)	lsiwgoB501
Bhi02G000372	Melon (DHL92) v3.6.1	medwgoB196
Bhi02G000372	Melon (DHL92) v3.6.1	medwgoB291
Bhi02G000372	Melon (DHL92) v3.5.1	mewgoB194
Bhi02G000372	Melon (DHL92) v3.5.1	mewgoB291
Bhi02G000372	Watermelon (Charleston Gray)	wcgwgoB255
Bhi02G000372	Watermelon (Charleston Gray)	wcgwgoB541
Bhi02G000372	Watermelon (97103) v2	wgowmbB623
Bhi02G000372	Watermelon (97103) v2	wgowmbB649
Bhi02G000372	Watermelon (97103) v1	wgowmB669
Bhi02G000372	Watermelon (97103) v1	wgowmB678
Bhi02G000372	Silver-seed gourd	carwgoB0449
Bhi02G000372	Silver-seed gourd	carwgoB1185
Bhi02G000372	Silver-seed gourd	carwgoB1227