Bhi01M002804 (mRNA) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi01M002804
Type	mRNA
Organism	Benincasa hispida (Wax gourd)
Description	protein FAR1-RELATED SEQUENCE 6-like
Location	chr1 : 91621090 .. 91621529 (+)
Sequence length	369

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGCGGCGGCGGCAGCAGCAGCAGAAGAAGAAGAAGATTATGAGCCAGTATACCTAAAAACTTCACTCCTCAAAGGTCAGGCGCTTTGTAGATTTCTTCCTCCCTTTTTTTGATCTAGGGTAGAATGGATGAAGTTTCTCTCAACACTGAGCCAATGGGCGATGAGGAGGGGGATTATTTTGATATCAAAGGGAATTCTGTAATTGTAGATTATGTTGATCAAAGTGGGGTATTTGAAGGAGAAAATACCCTTCCTCCTACCGTTTGTATGGAGTTTGAGTTTTATGAGGATGTGTACTACTTTTATAGTTGCTATGCAAAAGAACAGGGCTTTGGAGTCCGAGTTAGTAACACTTGGTATAGGAAGAGTAAGGAAAGGGACAGAGGAAAACTTAGCTGTAGCAGTGCAGGTTTCAAGAAGAGTGAAGCAAACTGA

mRNA sequence

ATGGCGGCGGCGGCGGCAGCAGCAGCAGAAGAAGAAGAAGATTATGAGCCAGGTAGAATGGATGAAGTTTCTCTCAACACTGAGCCAATGGGCGATGAGGAGGGGGATTATTTTGATATCAAAGGGAATTCTGTAATTGTAGATTATGTTGATCAAAGTGGGGTATTTGAAGGAGAAAATACCCTTCCTCCTACCGTTTGTATGGAGTTTGAGTTTTATGAGGATGTGTACTACTTTTATAGTTGCTATGCAAAAGAACAGGGCTTTGGAGTCCGAGTTAGTAACACTTGGTATAGGAAGAGTAAGGAAAGGGACAGAGGAAAACTTAGCTGTAGCAGTGCAGGTTTCAAGAAGAGTGAAGCAAACTGA

Coding sequence (CDS)

ATGGCGGCGGCGGCGGCAGCAGCAGCAGAAGAAGAAGAAGATTATGAGCCAGGTAGAATGGATGAAGTTTCTCTCAACACTGAGCCAATGGGCGATGAGGAGGGGGATTATTTTGATATCAAAGGGAATTCTGTAATTGTAGATTATGTTGATCAAAGTGGGGTATTTGAAGGAGAAAATACCCTTCCTCCTACCGTTTGTATGGAGTTTGAGTTTTATGAGGATGTGTACTACTTTTATAGTTGCTATGCAAAAGAACAGGGCTTTGGAGTCCGAGTTAGTAACACTTGGTATAGGAAGAGTAAGGAAAGGGACAGAGGAAAACTTAGCTGTAGCAGTGCAGGTTTCAAGAAGAGTGAAGCAAACTGA

Protein sequence

MAAAAAAAAEEEEDYEPGRMDEVSLNTEPMGDEEGDYFDIKGNSVIVDYVDQSGVFEGENTLPPTVCMEFEFYEDVYYFYSCYAKEQGFGVRVSNTWYRKSKERDRGKLSCSSAGFKKSEAN

Homology

[Close]

BLAST of Bhi01M002804 vs. TAIR10
Match: AT1G52520.1 (FAR1-related sequence 6)

HSP 1 Score: 66.2 bits (160), Expect = 1.6e-11
Identity = 37/71 (52.11%), Postives = 47/71 (66.20%), Query Frame = 0


Query: 51  DQSG--VFEGENTLPPTVCMEFEFYEDVYYFYSCYAKEQGFGVRVSNTWY-RKSKERDRG 110
           +QSG  V E +    P V MEFE Y+D Y +Y+CYA E GF VRV N+W+ R+SKE+   
Sbjct: 70  EQSGLLVDERKEFDAPAVGMEFESYDDAYNYYNCYASEVGFRVRVKNSWFKRRSKEKYGA 129

Query: 111 KLSCSSAGFKK 119
            L CSS GFK+
Sbjct: 130 VLCCSSQGFKR 140

[Close]

BLAST of Bhi01M002804 vs. TAIR10
Match: AT1G80010.1 (FAR1-related sequence 8)

HSP 1 Score: 58.2 bits (139), Expect = 4.2e-09
Identity = 29/56 (51.79%), Postives = 37/56 (66.07%), Query Frame = 0


Query: 63  PPTVCMEFEFYEDVYYFYSCYAKEQGFGVRVSNTW-YRKSKERDRGKLSCSSAGFK 118
           PPT  MEFE Y+D Y FY+ YA+E GF +RV ++W  R SKE+    L C+  GFK
Sbjct: 94  PPTPGMEFESYDDAYSFYNSYARELGFAIRVKSSWTKRNSKEKRGAVLCCNCQGFK 149

[Close]

BLAST of Bhi01M002804 vs. Swiss-Prot
Match: sp|Q9SSQ4|FRS6_ARATH (Protein FAR1-RELATED SEQUENCE 6 OS=Arabidopsis thaliana OX=3702 GN=FRS6 PE=2 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 2.8e-10
Identity = 37/71 (52.11%), Postives = 47/71 (66.20%), Query Frame = 0


Query: 51  DQSG--VFEGENTLPPTVCMEFEFYEDVYYFYSCYAKEQGFGVRVSNTWY-RKSKERDRG 110
           +QSG  V E +    P V MEFE Y+D Y +Y+CYA E GF VRV N+W+ R+SKE+   
Sbjct: 70  EQSGLLVDERKEFDAPAVGMEFESYDDAYNYYNCYASEVGFRVRVKNSWFKRRSKEKYGA 129

Query: 111 KLSCSSAGFKK 119
            L CSS GFK+
Sbjct: 130 VLCCSSQGFKR 140

[Close]

BLAST of Bhi01M002804 vs. Swiss-Prot
Match: sp|Q9S793|FRS8_ARATH (Protein FAR1-RELATED SEQUENCE 8 OS=Arabidopsis thaliana OX=3702 GN=FRS8 PE=2 SV=2)

HSP 1 Score: 58.2 bits (139), Expect = 7.6e-08
Identity = 29/56 (51.79%), Postives = 37/56 (66.07%), Query Frame = 0


Query: 63  PPTVCMEFEFYEDVYYFYSCYAKEQGFGVRVSNTW-YRKSKERDRGKLSCSSAGFK 118
           PPT  MEFE Y+D Y FY+ YA+E GF +RV ++W  R SKE+    L C+  GFK
Sbjct: 94  PPTPGMEFESYDDAYSFYNSYARELGFAIRVKSSWTKRNSKEKRGAVLCCNCQGFK 149

[Close]

BLAST of Bhi01M002804 vs. TrEMBL
Match: tr|A0A0A0KVM3|A0A0A0KVM3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G006410 PE=4 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 7.1e-43
Identity = 90/104 (86.54%), Postives = 96/104 (92.31%), Query Frame = 0


Query: 20  MDEVSLNTEPMGDEEGDYFDIKGNSVIVDYVDQSGVFEGENTLPPTVCMEFEFYEDVYYF 79
           MD VSLNTEP+GDEEGDYF+I+G+SVI DYVDQSG+FEGEN LPP V MEFE YEDVYYF
Sbjct: 1   MDGVSLNTEPVGDEEGDYFEIEGDSVIADYVDQSGIFEGENPLPPAVGMEFESYEDVYYF 60

Query: 80  YSCYAKEQGFGVRVSNTWYRKSKERDRGKLSCSSAGF-KKSEAN 123
           YSCYAKEQGFGVRVSNTWYRKSKE+ RGKLSCSSAGF KKSEAN
Sbjct: 61  YSCYAKEQGFGVRVSNTWYRKSKEKYRGKLSCSSAGFKKKSEAN 104

[Close]

BLAST of Bhi01M002804 vs. TrEMBL
Match: tr|A0A1S3BYS6|A0A1S3BYS6_CUCME (protein FAR1-RELATED SEQUENCE 6-like OS=Cucumis melo OX=3656 GN=LOC103494662 PE=4 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 2.3e-41
Identity = 87/104 (83.65%), Postives = 95/104 (91.35%), Query Frame = 0


Query: 20  MDEVSLNTEPMGDEEGDYFDIKGNSVIVDYVDQSGVFEGENTLPPTVCMEFEFYEDVYYF 79
           MD VSLNTEP+G+EEGDYF+I+G+S I DYVDQ+G+FEGEN LPP V MEFE YEDVYYF
Sbjct: 1   MDGVSLNTEPVGEEEGDYFEIEGDSEIADYVDQNGIFEGENPLPPAVGMEFESYEDVYYF 60

Query: 80  YSCYAKEQGFGVRVSNTWYRKSKERDRGKLSCSSAGF-KKSEAN 123
           YSCYAKEQGFGVRVSNTWYRKSKE+ RGKLSCSSAGF KKSEAN
Sbjct: 61  YSCYAKEQGFGVRVSNTWYRKSKEKYRGKLSCSSAGFKKKSEAN 104

[Close]

BLAST of Bhi01M002804 vs. TrEMBL
Match: tr|A0A2I4DIH0|A0A2I4DIH0_9ROSI (protein FAR1-RELATED SEQUENCE 6-like OS=Juglans regia OX=51240 GN=LOC108980465 PE=4 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 2.0e-37
Identity = 79/104 (75.96%), Postives = 93/104 (89.42%), Query Frame = 0


Query: 20  MDEVSLNTEPMGDEEGDYFDIKGNSVIVDYVDQSGVFEGENTLPPTVCMEFEFYEDVYYF 79
           MDEVSLN+EP+GD++ D F+I+G+S +++YV Q+G+ +GEN LPP V MEFE YEDVYYF
Sbjct: 1   MDEVSLNSEPVGDDDADEFEIEGDSSMIEYVGQTGIIQGENPLPPVVGMEFESYEDVYYF 60

Query: 80  YSCYAKEQGFGVRVSNTWYRKSKERDRGKLSCSSAGF-KKSEAN 123
           Y+CYAKEQGFGVRVSNTWYRKSKER RGKLSCSSAGF KKSEAN
Sbjct: 61  YNCYAKEQGFGVRVSNTWYRKSKERYRGKLSCSSAGFKKKSEAN 104

[Close]

BLAST of Bhi01M002804 vs. TrEMBL
Match: tr|A0A067KLN6|A0A067KLN6_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_06113 PE=4 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 5.8e-37
Identity = 79/104 (75.96%), Postives = 92/104 (88.46%), Query Frame = 0


Query: 20  MDEVSLNTEPMGDEEGDYFDIKGNSVIVDYVDQSGVFEGENTLPPTVCMEFEFYEDVYYF 79
           MDEVSLNTEP+G+++ D F+I+G+  + +YV Q+GV +GEN LPP+V MEFE YEDVYYF
Sbjct: 1   MDEVSLNTEPVGEDDADEFEIEGDCAMAEYVGQTGVIQGENPLPPSVGMEFESYEDVYYF 60

Query: 80  YSCYAKEQGFGVRVSNTWYRKSKERDRGKLSCSSAGF-KKSEAN 123
           Y+CYAKEQGFGVRVSNTWYRKSKER RGKLSCSSAGF KKSEAN
Sbjct: 61  YNCYAKEQGFGVRVSNTWYRKSKERYRGKLSCSSAGFKKKSEAN 104

[Close]

BLAST of Bhi01M002804 vs. TrEMBL
Match: tr|M5WRA1|M5WRA1_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_3G090300 PE=4 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 2.9e-36
Identity = 76/104 (73.08%), Postives = 90/104 (86.54%), Query Frame = 0


Query: 20  MDEVSLNTEPMGDEEGDYFDIKGNSVIVDYVDQSGVFEGENTLPPTVCMEFEFYEDVYYF 79
           MDEVSLNTEP GD++ D F+I+G+  + D++ Q+G+ +GEN LPP V MEF+ YEDVYYF
Sbjct: 1   MDEVSLNTEPAGDDDADEFEIEGDCAMTDFISQTGIIQGENPLPPVVGMEFDSYEDVYYF 60

Query: 80  YSCYAKEQGFGVRVSNTWYRKSKERDRGKLSCSSAGF-KKSEAN 123
           Y+CYAK+QGFGVRVSNTWYRKSKER RGKLSCSSAGF KKSEAN
Sbjct: 61  YNCYAKQQGFGVRVSNTWYRKSKERYRGKLSCSSAGFKKKSEAN 104

[Close]

BLAST of Bhi01M002804 vs. NCBI nr
Match: XP_011652996.1 (PREDICTED: protein FAR1-RELATED SEQUENCE 6 [Cucumis sativus] >KGN52934.1 hypothetical protein Csa_4G006410 [Cucumis sativus])

HSP 1 Score: 182.2 bits (461), Expect = 1.1e-42
Identity = 90/104 (86.54%), Postives = 96/104 (92.31%), Query Frame = 0


Query: 20  MDEVSLNTEPMGDEEGDYFDIKGNSVIVDYVDQSGVFEGENTLPPTVCMEFEFYEDVYYF 79
           MD VSLNTEP+GDEEGDYF+I+G+SVI DYVDQSG+FEGEN LPP V MEFE YEDVYYF
Sbjct: 1   MDGVSLNTEPVGDEEGDYFEIEGDSVIADYVDQSGIFEGENPLPPAVGMEFESYEDVYYF 60

Query: 80  YSCYAKEQGFGVRVSNTWYRKSKERDRGKLSCSSAGF-KKSEAN 123
           YSCYAKEQGFGVRVSNTWYRKSKE+ RGKLSCSSAGF KKSEAN
Sbjct: 61  YSCYAKEQGFGVRVSNTWYRKSKEKYRGKLSCSSAGFKKKSEAN 104

[Close]

BLAST of Bhi01M002804 vs. NCBI nr
Match: XP_008454179.1 (PREDICTED: protein FAR1-RELATED SEQUENCE 6-like [Cucumis melo] >XP_008454180.1 PREDICTED: protein FAR1-RELATED SEQUENCE 6-like [Cucumis melo])

HSP 1 Score: 177.2 bits (448), Expect = 3.4e-41
Identity = 87/104 (83.65%), Postives = 95/104 (91.35%), Query Frame = 0


Query: 20  MDEVSLNTEPMGDEEGDYFDIKGNSVIVDYVDQSGVFEGENTLPPTVCMEFEFYEDVYYF 79
           MD VSLNTEP+G+EEGDYF+I+G+S I DYVDQ+G+FEGEN LPP V MEFE YEDVYYF
Sbjct: 1   MDGVSLNTEPVGEEEGDYFEIEGDSEIADYVDQNGIFEGENPLPPAVGMEFESYEDVYYF 60

Query: 80  YSCYAKEQGFGVRVSNTWYRKSKERDRGKLSCSSAGF-KKSEAN 123
           YSCYAKEQGFGVRVSNTWYRKSKE+ RGKLSCSSAGF KKSEAN
Sbjct: 61  YSCYAKEQGFGVRVSNTWYRKSKEKYRGKLSCSSAGFKKKSEAN 104

[Close]

BLAST of Bhi01M002804 vs. NCBI nr
Match: XP_022948397.1 (protein FAR1-RELATED SEQUENCE 6-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 176.0 bits (445), Expect = 7.7e-41
Identity = 86/104 (82.69%), Postives = 95/104 (91.35%), Query Frame = 0


Query: 20  MDEVSLNTEPMGDEEGDYFDIKGNSVIVDYVDQSGVFEGENTLPPTVCMEFEFYEDVYYF 79
           MD VSLNT+P+GDEE DYF+I+G+SV+ DYVDQ+G+F+GEN LPP V MEFE YEDVYYF
Sbjct: 1   MDGVSLNTDPVGDEEADYFEIEGDSVLADYVDQTGMFQGENPLPPAVGMEFESYEDVYYF 60

Query: 80  YSCYAKEQGFGVRVSNTWYRKSKERDRGKLSCSSAGF-KKSEAN 123
           YSCYAKEQGFGVRVSNTWYRKSKER RGKLSCSSAGF KKSEAN
Sbjct: 61  YSCYAKEQGFGVRVSNTWYRKSKERYRGKLSCSSAGFKKKSEAN 104

[Close]

BLAST of Bhi01M002804 vs. NCBI nr
Match: XP_022998133.1 (protein FAR1-RELATED SEQUENCE 6-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 176.0 bits (445), Expect = 7.7e-41
Identity = 86/104 (82.69%), Postives = 95/104 (91.35%), Query Frame = 0


Query: 20  MDEVSLNTEPMGDEEGDYFDIKGNSVIVDYVDQSGVFEGENTLPPTVCMEFEFYEDVYYF 79
           MD VSLNT+P+GDEE DYF+I+G+SV+ DYVDQ+G+F+GEN LPP V MEFE YEDVYYF
Sbjct: 1   MDGVSLNTDPVGDEEADYFEIEGDSVLADYVDQTGMFQGENPLPPAVGMEFESYEDVYYF 60

Query: 80  YSCYAKEQGFGVRVSNTWYRKSKERDRGKLSCSSAGF-KKSEAN 123
           YSCYAKEQGFGVRVSNTWYRKSKER RGKLSCSSAGF KKSEAN
Sbjct: 61  YSCYAKEQGFGVRVSNTWYRKSKERYRGKLSCSSAGFKKKSEAN 104

[Close]

BLAST of Bhi01M002804 vs. NCBI nr
Match: XP_023523301.1 (protein FAR1-RELATED SEQUENCE 6-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023523302.1 protein FAR1-RELATED SEQUENCE 6-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 176.0 bits (445), Expect = 7.7e-41
Identity = 86/104 (82.69%), Postives = 95/104 (91.35%), Query Frame = 0


Query: 20  MDEVSLNTEPMGDEEGDYFDIKGNSVIVDYVDQSGVFEGENTLPPTVCMEFEFYEDVYYF 79
           MD VSLNT+P+GDEE DYF+I+G+SV+ DYVDQ+G+F+GEN LPP V MEFE YEDVYYF
Sbjct: 1   MDGVSLNTDPVGDEEADYFEIEGDSVLADYVDQTGMFQGENPLPPAVGMEFESYEDVYYF 60

Query: 80  YSCYAKEQGFGVRVSNTWYRKSKERDRGKLSCSSAGF-KKSEAN 123
           YSCYAKEQGFGVRVSNTWYRKSKER RGKLSCSSAGF KKSEAN
Sbjct: 61  YSCYAKEQGFGVRVSNTWYRKSKERYRGKLSCSSAGFKKKSEAN 104

The following BLAST results are available for this feature:

BLAST of Bhi01M002804 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G52520.1	1.6e-11	52.11	FAR1-related sequence 6	[more]
AT1G80010.1	4.2e-09	51.79	FAR1-related sequence 8	[more]

BLAST of Bhi01M002804 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9SSQ4\|FRS6_ARATH	2.8e-10	52.11	Protein FAR1-RELATED SEQUENCE 6 OS=Arabidopsis thaliana OX=3702 GN=FRS6 PE=2 SV=...	[more]
sp\|Q9S793\|FRS8_ARATH	7.6e-08	51.79	Protein FAR1-RELATED SEQUENCE 8 OS=Arabidopsis thaliana OX=3702 GN=FRS8 PE=2 SV=...	[more]

BLAST of Bhi01M002804 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KVM3\|A0A0A0KVM3_CUCSA	7.1e-43	86.54	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G006410 PE=4 SV=1	[more]
tr\|A0A1S3BYS6\|A0A1S3BYS6_CUCME	2.3e-41	83.65	protein FAR1-RELATED SEQUENCE 6-like OS=Cucumis melo OX=3656 GN=LOC103494662 PE=...	[more]
tr\|A0A2I4DIH0\|A0A2I4DIH0_9ROSI	2.0e-37	75.96	protein FAR1-RELATED SEQUENCE 6-like OS=Juglans regia OX=51240 GN=LOC108980465 P...	[more]
tr\|A0A067KLN6\|A0A067KLN6_JATCU	5.8e-37	75.96	Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_06113 PE=4 SV=1	[more]
tr\|M5WRA1\|M5WRA1_PRUPE	2.9e-36	73.08	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_3G090300 PE=4 SV=1	[more]

BLAST of Bhi01M002804 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011652996.1	1.1e-42	86.54	PREDICTED: protein FAR1-RELATED SEQUENCE 6 [Cucumis sativus] >KGN52934.1 hypothe...	[more]
XP_008454179.1	3.4e-41	83.65	PREDICTED: protein FAR1-RELATED SEQUENCE 6-like [Cucumis melo] >XP_008454180.1 P...	[more]
XP_022948397.1	7.7e-41	82.69	protein FAR1-RELATED SEQUENCE 6-like isoform X1 [Cucurbita moschata]	[more]
XP_022998133.1	7.7e-41	82.69	protein FAR1-RELATED SEQUENCE 6-like isoform X1 [Cucurbita maxima]	[more]
XP_023523301.1	7.7e-41	82.69	protein FAR1-RELATED SEQUENCE 6-like isoform X1 [Cucurbita pepo subsp. pepo] >XP...	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **Biological Process**
Term	Definition
GO:0006355	regulation of transcription, DNA-templated

Vocabulary: **INTERPRO**
Term	Definition
IPR031052	FHY3/FAR1
IPR004330	FAR1_DNA_bnd_dom

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
molecular_function	GO:0008270	zinc ion binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Bhi01G002804	Bhi01G002804	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Bhi01M002804.exon1	Bhi01M002804.exon1	exon
Bhi01M002804.exon2	Bhi01M002804.exon2	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.Bhi01M002804	cds.Bhi01M002804	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Bhi01M002804	Bhi01M002804-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004330	FAR1 DNA binding domain	PFAM	PF03101	FAR1	coord: 79..120 e-value: 1.8E-5 score: 25.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 103..122
None	No IPR available	PANTHER	PTHR31669:SF15	SUBFAMILY NOT NAMED	coord: 17..121
IPR031052	FHY3/FAR1 family	PANTHER	PTHR31669	FAMILY NOT NAMED	coord: 17..121