Bhi01M002176 (mRNA) Wax gourd

Overview
NameBhi01M002176
TypemRNA
OrganismBenincasa hispida (Wax gourd)
DescriptionUnknown protein
Locationchr1 : 68942339 .. 68942866 (-)
Sequence length528
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAAAAACCAGTTTGGAGAATTCCAGGAGCAAATACTTCTGTTACAAAGCAAAGTGAGGATGCTACGATCACTGATCACCATAATGGGGATGTTGAAATTCAGTTATATTCAGAACCAAGATATCCCAGAATTCAAGAAATTATGAGTAGTAGGCCAAGAACTTCTTCCGAAACACGACCAACTAGCAACACTTCCAGATCTATCCCTAGATCTAGGTCAATGAGAACGTCTGTGGATTTTGATAGATCTATTCCGAACATTCATTATGAAAGGGACGAAGGTTTCTTATCTCCTACCCAATTCGACATGGAAAGAAGATTGGAGCCAATTTACAACCAAATTAATGTACTATCGACGTATGAAACTCCTAAGAAAAGATACGAGCGAAAGTACAGTCAATATATAGATCTCTATATATCTCTGCCAAAGGAGACCAGAGGAGTTTTCATTCTAAAAGGAGATTTCTTCAAAAGAATGAAAGAAAGAGATGAAATGGCAGAACGTTGTTGTCTCACTCTCAAGTAA

mRNA sequence

ATGCAAAAACCAGTTTGGAGAATTCCAGGAGCAAATACTTCTGTTACAAAGCAAAGTGAGGATGCTACGATCACTGATCACCATAATGGGGATGTTGAAATTCAGTTATATTCAGAACCAAGATATCCCAGAATTCAAGAAATTATGAGTAGTAGGCCAAGAACTTCTTCCGAAACACGACCAACTAGCAACACTTCCAGATCTATCCCTAGATCTAGGTCAATGAGAACGTCTGTGGATTTTGATAGATCTATTCCGAACATTCATTATGAAAGGGACGAAGGTTTCTTATCTCCTACCCAATTCGACATGGAAAGAAGATTGGAGCCAATTTACAACCAAATTAATGTACTATCGACGTATGAAACTCCTAAGAAAAGATACGAGCGAAAGTACAGTCAATATATAGATCTCTATATATCTCTGCCAAAGGAGACCAGAGGAGTTTTCATTCTAAAAGGAGATTTCTTCAAAAGAATGAAAGAAAGAGATGAAATGGCAGAACGTTGTTGTCTCACTCTCAAGTAA

Coding sequence (CDS)

ATGCAAAAACCAGTTTGGAGAATTCCAGGAGCAAATACTTCTGTTACAAAGCAAAGTGAGGATGCTACGATCACTGATCACCATAATGGGGATGTTGAAATTCAGTTATATTCAGAACCAAGATATCCCAGAATTCAAGAAATTATGAGTAGTAGGCCAAGAACTTCTTCCGAAACACGACCAACTAGCAACACTTCCAGATCTATCCCTAGATCTAGGTCAATGAGAACGTCTGTGGATTTTGATAGATCTATTCCGAACATTCATTATGAAAGGGACGAAGGTTTCTTATCTCCTACCCAATTCGACATGGAAAGAAGATTGGAGCCAATTTACAACCAAATTAATGTACTATCGACGTATGAAACTCCTAAGAAAAGATACGAGCGAAAGTACAGTCAATATATAGATCTCTATATATCTCTGCCAAAGGAGACCAGAGGAGTTTTCATTCTAAAAGGAGATTTCTTCAAAAGAATGAAAGAAAGAGATGAAATGGCAGAACGTTGTTGTCTCACTCTCAAGTAA

Protein sequence

MQKPVWRIPGANTSVTKQSEDATITDHHNGDVEIQLYSEPRYPRIQEIMSSRPRTSSETRPTSNTSRSIPRSRSMRTSVDFDRSIPNIHYERDEGFLSPTQFDMERRLEPIYNQINVLSTYETPKKRYERKYSQYIDLYISLPKETRGVFILKGDFFKRMKERDEMAERCCLTLK
Homology
[Close]
BLAST of Bhi01M002176 vs. TrEMBL
Match: tr|A0A0A0M024|A0A0A0M024_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G434190 PE=4 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 7.1e-28
Identity = 72/164 (43.90%), Postives = 102/164 (62.20%), Query Frame = 0 

Query: 5   VWRIPGANTSVTKQSEDATITDHHNGDVEIQLYSEPRYPRIQEIMSSRPRTSSETRPTSN 64
           +WR+      + + S +A+IT+  +G+VE+Q  ++  YPRI EIMSSRP T S  R    
Sbjct: 234 IWRLQEETAPIKRSSNEASITEFPDGNVEVQFTNDISYPRISEIMSSRPSTFS-IRLEVP 293

Query: 65  TSRSIPRSRSMRTSVDFDRSIPNIHYERDEGFLSPTQFDMERRLEPIYNQINVLSTYETP 124
              ++ RS S+RTSVDF RSIPN+HYER++G LSPTQFDMERR EP +NQINV+S     
Sbjct: 294 YKDTLRRSESIRTSVDFTRSIPNVHYEREDGSLSPTQFDMERRSEPAFNQINVIS---DD 353

Query: 125 KKRYERKYSQYIDLYISLPKETRGVFILKGDFFKRMKERDEMAE 169
           ++R+   Y +Y++ +   P ET+  F+    F +   E     E
Sbjct: 354 RERFREHYIKYVETWTKAPAETKKPFLYMSAFVENEAEASAKQE 393

[Close]
BLAST of Bhi01M002176 vs. NCBI nr
Match: KGN65521.1 (hypothetical protein Csa_1G434190 [Cucumis sativus])

HSP 1 Score: 132.9 bits (333), Expect = 1.1e-27
Identity = 72/164 (43.90%), Postives = 102/164 (62.20%), Query Frame = 0 

Query: 5   VWRIPGANTSVTKQSEDATITDHHNGDVEIQLYSEPRYPRIQEIMSSRPRTSSETRPTSN 64
           +WR+      + + S +A+IT+  +G+VE+Q  ++  YPRI EIMSSRP T S  R    
Sbjct: 234 IWRLQEETAPIKRSSNEASITEFPDGNVEVQFTNDISYPRISEIMSSRPSTFS-IRLEVP 293

Query: 65  TSRSIPRSRSMRTSVDFDRSIPNIHYERDEGFLSPTQFDMERRLEPIYNQINVLSTYETP 124
              ++ RS S+RTSVDF RSIPN+HYER++G LSPTQFDMERR EP +NQINV+S     
Sbjct: 294 YKDTLRRSESIRTSVDFTRSIPNVHYEREDGSLSPTQFDMERRSEPAFNQINVIS---DD 353

Query: 125 KKRYERKYSQYIDLYISLPKETRGVFILKGDFFKRMKERDEMAE 169
           ++R+   Y +Y++ +   P ET+  F+    F +   E     E
Sbjct: 354 RERFREHYIKYVETWTKAPAETKKPFLYMSAFVENEAEASAKQE 393

The following BLAST results are available for this feature:
BLAST of Bhi01M002176 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Bhi01M002176 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Bhi01M002176 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0M024|A0A0A0M024_CUCSA7.1e-2843.90Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G434190 PE=4 SV=1[more]
BLAST of Bhi01M002176 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN65521.11.1e-2743.90hypothetical protein Csa_1G434190 [Cucumis sativus][more]
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Bhi01G002176Bhi01G002176gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
cds.Bhi01M002176cds.Bhi01M002176CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Bhi01M002176.exon1Bhi01M002176.exon1exon


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Bhi01M002176Bhi01M002176-proteinpolypeptide


InterPro
Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 49..77
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 48..77