Bhi01G002176 (gene) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi01G002176
Type	gene
Organism	Benincasa hispida (Wax gourd)
Description	Unknown protein
Location	chr1 : 68942339 .. 68942866 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAAAAACCAGTTTGGAGAATTCCAGGAGCAAATACTTCTGTTACAAAGCAAAGTGAGGATGCTACGATCACTGATCACCATAATGGGGATGTTGAAATTCAGTTATATTCAGAACCAAGATATCCCAGAATTCAAGAAATTATGAGTAGTAGGCCAAGAACTTCTTCCGAAACACGACCAACTAGCAACACTTCCAGATCTATCCCTAGATCTAGGTCAATGAGAACGTCTGTGGATTTTGATAGATCTATTCCGAACATTCATTATGAAAGGGACGAAGGTTTCTTATCTCCTACCCAATTCGACATGGAAAGAAGATTGGAGCCAATTTACAACCAAATTAATGTACTATCGACGTATGAAACTCCTAAGAAAAGATACGAGCGAAAGTACAGTCAATATATAGATCTCTATATATCTCTGCCAAAGGAGACCAGAGGAGTTTTCATTCTAAAAGGAGATTTCTTCAAAAGAATGAAAGAAAGAGATGAAATGGCAGAACGTTGTTGTCTCACTCTCAAGTAA

mRNA sequence

ATGCAAAAACCAGTTTGGAGAATTCCAGGAGCAAATACTTCTGTTACAAAGCAAAGTGAGGATGCTACGATCACTGATCACCATAATGGGGATGTTGAAATTCAGTTATATTCAGAACCAAGATATCCCAGAATTCAAGAAATTATGAGTAGTAGGCCAAGAACTTCTTCCGAAACACGACCAACTAGCAACACTTCCAGATCTATCCCTAGATCTAGGTCAATGAGAACGTCTGTGGATTTTGATAGATCTATTCCGAACATTCATTATGAAAGGGACGAAGGTTTCTTATCTCCTACCCAATTCGACATGGAAAGAAGATTGGAGCCAATTTACAACCAAATTAATGTACTATCGACGTATGAAACTCCTAAGAAAAGATACGAGCGAAAGTACAGTCAATATATAGATCTCTATATATCTCTGCCAAAGGAGACCAGAGGAGTTTTCATTCTAAAAGGAGATTTCTTCAAAAGAATGAAAGAAAGAGATGAAATGGCAGAACGTTGTTGTCTCACTCTCAAGTAA

Coding sequence (CDS)

ATGCAAAAACCAGTTTGGAGAATTCCAGGAGCAAATACTTCTGTTACAAAGCAAAGTGAGGATGCTACGATCACTGATCACCATAATGGGGATGTTGAAATTCAGTTATATTCAGAACCAAGATATCCCAGAATTCAAGAAATTATGAGTAGTAGGCCAAGAACTTCTTCCGAAACACGACCAACTAGCAACACTTCCAGATCTATCCCTAGATCTAGGTCAATGAGAACGTCTGTGGATTTTGATAGATCTATTCCGAACATTCATTATGAAAGGGACGAAGGTTTCTTATCTCCTACCCAATTCGACATGGAAAGAAGATTGGAGCCAATTTACAACCAAATTAATGTACTATCGACGTATGAAACTCCTAAGAAAAGATACGAGCGAAAGTACAGTCAATATATAGATCTCTATATATCTCTGCCAAAGGAGACCAGAGGAGTTTTCATTCTAAAAGGAGATTTCTTCAAAAGAATGAAAGAAAGAGATGAAATGGCAGAACGTTGTTGTCTCACTCTCAAGTAA

Protein sequence

MQKPVWRIPGANTSVTKQSEDATITDHHNGDVEIQLYSEPRYPRIQEIMSSRPRTSSETRPTSNTSRSIPRSRSMRTSVDFDRSIPNIHYERDEGFLSPTQFDMERRLEPIYNQINVLSTYETPKKRYERKYSQYIDLYISLPKETRGVFILKGDFFKRMKERDEMAERCCLTLK

Homology

[Close]

BLAST of Bhi01G002176 vs. TrEMBL
Match: tr|A0A0A0M024|A0A0A0M024_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G434190 PE=4 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 7.1e-28
Identity = 72/164 (43.90%), Postives = 102/164 (62.20%), Query Frame = 0


Query: 5   VWRIPGANTSVTKQSEDATITDHHNGDVEIQLYSEPRYPRIQEIMSSRPRTSSETRPTSN 64
           +WR+      + + S +A+IT+  +G+VE+Q  ++  YPRI EIMSSRP T S  R    
Sbjct: 234 IWRLQEETAPIKRSSNEASITEFPDGNVEVQFTNDISYPRISEIMSSRPSTFS-IRLEVP 293

Query: 65  TSRSIPRSRSMRTSVDFDRSIPNIHYERDEGFLSPTQFDMERRLEPIYNQINVLSTYETP 124
              ++ RS S+RTSVDF RSIPN+HYER++G LSPTQFDMERR EP +NQINV+S     
Sbjct: 294 YKDTLRRSESIRTSVDFTRSIPNVHYEREDGSLSPTQFDMERRSEPAFNQINVIS---DD 353

Query: 125 KKRYERKYSQYIDLYISLPKETRGVFILKGDFFKRMKERDEMAE 169
           ++R+   Y +Y++ +   P ET+  F+    F +   E     E
Sbjct: 354 RERFREHYIKYVETWTKAPAETKKPFLYMSAFVENEAEASAKQE 393

[Close]

BLAST of Bhi01G002176 vs. NCBI nr
Match: KGN65521.1 (hypothetical protein Csa_1G434190 [Cucumis sativus])

HSP 1 Score: 132.9 bits (333), Expect = 1.1e-27
Identity = 72/164 (43.90%), Postives = 102/164 (62.20%), Query Frame = 0


Query: 5   VWRIPGANTSVTKQSEDATITDHHNGDVEIQLYSEPRYPRIQEIMSSRPRTSSETRPTSN 64
           +WR+      + + S +A+IT+  +G+VE+Q  ++  YPRI EIMSSRP T S  R    
Sbjct: 234 IWRLQEETAPIKRSSNEASITEFPDGNVEVQFTNDISYPRISEIMSSRPSTFS-IRLEVP 293

Query: 65  TSRSIPRSRSMRTSVDFDRSIPNIHYERDEGFLSPTQFDMERRLEPIYNQINVLSTYETP 124
              ++ RS S+RTSVDF RSIPN+HYER++G LSPTQFDMERR EP +NQINV+S     
Sbjct: 294 YKDTLRRSESIRTSVDFTRSIPNVHYEREDGSLSPTQFDMERRSEPAFNQINVIS---DD 353

Query: 125 KKRYERKYSQYIDLYISLPKETRGVFILKGDFFKRMKERDEMAE 169
           ++R+   Y +Y++ +   P ET+  F+    F +   E     E
Sbjct: 354 RERFREHYIKYVETWTKAPAETKKPFLYMSAFVENEAEASAKQE 393

The following BLAST results are available for this feature:

BLAST of Bhi01G002176 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Bhi01G002176 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Bhi01G002176 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0M024\|A0A0A0M024_CUCSA	7.1e-28	43.90	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G434190 PE=4 SV=1	[more]

BLAST of Bhi01G002176 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN65521.1	1.1e-27	43.90	hypothetical protein Csa_1G434190 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi01M002176	Bhi01M002176	mRNA

InterPro

Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 49..77
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 48..77

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Bhi01G002176	MELO3C025826	Melon (DHL92) v3.5.1	mewgoB392

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Bhi01G002176	Cucumber (Gy14) v1	cgywgoB682
Bhi01G002176	Cucumber (Gy14) v2	cgybwgoB287
Bhi01G002176	Cucurbita maxima (Rimu)	cmawgoB0330
Bhi01G002176	Cucurbita maxima (Rimu)	cmawgoB0564
Bhi01G002176	Cucurbita moschata (Rifu)	cmowgoB0319
Bhi01G002176	Cucurbita moschata (Rifu)	cmowgoB0561
Bhi01G002176	Cucurbita pepo (Zucchini)	cpewgoB0675
Bhi01G002176	Cucurbita pepo (Zucchini)	cpewgoB0785
Bhi01G002176	Wild cucumber (PI 183967)	cpiwgoB301
Bhi01G002176	Cucumber (Chinese Long) v3	cucwgoB303
Bhi01G002176	Bottle gourd (USVL1VR-Ls)	lsiwgoB544
Bhi01G002176	Melon (DHL92) v3.6.1	medwgoB393
Bhi01G002176	Watermelon (Charleston Gray)	wcgwgoB561
Bhi01G002176	Watermelon (Charleston Gray)	wcgwgoB567
Bhi01G002176	Watermelon (97103) v2	wgowmbB208
Bhi01G002176	Watermelon (97103) v2	wgowmbB214
Bhi01G002176	Watermelon (97103) v1	wgowmB189
Bhi01G002176	Watermelon (97103) v1	wgowmB196
Bhi01G002176	Silver-seed gourd	carwgoB0142
Bhi01G002176	Silver-seed gourd	carwgoB0245