Bhi01M002096 (mRNA) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi01M002096
Type	mRNA
Organism	Benincasa hispida (Wax gourd)
Description	Unknown protein
Location	chr1 : 66432596 .. 66432820 (-)
Sequence length	225

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGACCATTATACGTTGGCAGAAAGCAAGGCATTGTGTAGACAAACAAAACAAGGAGAGAATACCAGTGAAGTCACTCACCAGGAAACACAGAAGAGGGGAAAGGAAAGAAACCCTAGAACAGAAAGCGCATGATGGAGAAATGGGTGAGGGGATGTGGAAGCTTTTTGGCCATGGAGGTGGGAGGTTGAAGGGGAAGAAGGTCGCCGGCGGAAGCGGTTGA

mRNA sequence

ATGGGGACCATTATACGTTGGCAGAAAGCAAGGCATTGTGTAGACAAACAAAACAAGGAGAGAATACCAGTGAAGTCACTCACCAGGAAACACAGAAGAGGGGAAAGGAAAGAAACCCTAGAACAGAAAGCGCATGATGGAGAAATGGGTGAGGGGATGTGGAAGCTTTTTGGCCATGGAGGTGGGAGGTTGAAGGGGAAGAAGGTCGCCGGCGGAAGCGGTTGA

Coding sequence (CDS)

ATGGGGACCATTATACGTTGGCAGAAAGCAAGGCATTGTGTAGACAAACAAAACAAGGAGAGAATACCAGTGAAGTCACTCACCAGGAAACACAGAAGAGGGGAAAGGAAAGAAACCCTAGAACAGAAAGCGCATGATGGAGAAATGGGTGAGGGGATGTGGAAGCTTTTTGGCCATGGAGGTGGGAGGTTGAAGGGGAAGAAGGTCGCCGGCGGAAGCGGTTGA

Protein sequence

MGTIIRWQKARHCVDKQNKERIPVKSLTRKHRRGERKETLEQKAHDGEMGEGMWKLFGHGGGRLKGKKVAGGSG

Homology

[Close]

BLAST of Bhi01M002096 vs. TrEMBL
Match: tr|A0A0A0KU78|A0A0A0KU78_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G015730 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 3.6e-05
Identity = 35/68 (51.47%), Postives = 42/68 (61.76%), Query Frame = 0


Query: 5   IRWQKARHCVDKQNKERIPVKSLTRKHRRG-ERKETLEQKAHDGEMGEGMWKLFGHGGGR 64
           I ++K  H   + + E  P     R  R+G ERK TLEQK HDGE GEG+ KL G GG R
Sbjct: 58  IPFRKIGHSKARPDNELDPKTKQRRGERKGKERKGTLEQKVHDGETGEGILKLCGRGGRR 117

Query: 65  LKGKKVAG 72
           L GKK+AG
Sbjct: 118 LMGKKIAG 125

[Close]

BLAST of Bhi01M002096 vs. NCBI nr
Match: KGN53083.1 (hypothetical protein Csa_4G015730 [Cucumis sativus])

HSP 1 Score: 56.2 bits (134), Expect = 5.4e-05
Identity = 35/68 (51.47%), Postives = 42/68 (61.76%), Query Frame = 0


Query: 5   IRWQKARHCVDKQNKERIPVKSLTRKHRRG-ERKETLEQKAHDGEMGEGMWKLFGHGGGR 64
           I ++K  H   + + E  P     R  R+G ERK TLEQK HDGE GEG+ KL G GG R
Sbjct: 58  IPFRKIGHSKARPDNELDPKTKQRRGERKGKERKGTLEQKVHDGETGEGILKLCGRGGRR 117

Query: 65  LKGKKVAG 72
           L GKK+AG
Sbjct: 118 LMGKKIAG 125

The following BLAST results are available for this feature:

BLAST of Bhi01M002096 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Bhi01M002096 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Bhi01M002096 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KU78\|A0A0A0KU78_CUCSA	3.6e-05	51.47	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G015730 PE=4 SV=1	[more]

BLAST of Bhi01M002096 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN53083.1	5.4e-05	51.47	hypothetical protein Csa_4G015730 [Cucumis sativus]	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Bhi01G002096	Bhi01G002096	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.Bhi01M002096	cds.Bhi01M002096	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Bhi01M002096.exon1	Bhi01M002096.exon1	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Bhi01M002096	Bhi01M002096-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 27..50
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 33..50