Bhi01M000648 (mRNA) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi01M000648
Type	mRNA
Organism	Benincasa hispida (Wax gourd)
Description	Glutelin type-A
Location	chr1 : 16686451 .. 16686785 (+)
Sequence length	246

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATAGAGGTTGTTATTATTCTTGATCTCCCAAGGAGATTCCAATGCTTAGTGAAGGAAACATCGACGCTTCTAAGCTCGCCCTCGAGGGGCTTTGCTCTTCCTCACTACTTTGATTCTGCCAAGGTCGCTCACATTCTTCGAGGTAAATTTTAATTTTGTTTACTTTCTACTCTATCTGAAAGTTTCAATTTTAGTACGAGTATGATCTAATTGATGAACAAAATGTTTCAGGCAATGGAGTAGCTGGAATCATTCTACTAGAATCGAAGGAGAAGGTTATCGCAATCAAGAAAGGAGATGCAATCGCTCTCCCATTTCGCATGGTTTGTTAG

mRNA sequence

ATGATAGAGGTTGTTATTATTCTTGATCTCCCAAGGAGATTCCAATGCTTAGTGAAGGAAACATCGACGCTTCTAAGCTCGCCCTCGAGGGGCTTTGCTCTTCCTCACTACTTTGATTCTGCCAAGGTCGCTCACATTCTTCGAGGCAATGGAGTAGCTGGAATCATTCTACTAGAATCGAAGGAGAAGGTTATCGCAATCAAGAAAGGAGATGCAATCGCTCTCCCATTTCGCATGGTTTGTTAG

Coding sequence (CDS)

ATGATAGAGGTTGTTATTATTCTTGATCTCCCAAGGAGATTCCAATGCTTAGTGAAGGAAACATCGACGCTTCTAAGCTCGCCCTCGAGGGGCTTTGCTCTTCCTCACTACTTTGATTCTGCCAAGGTCGCTCACATTCTTCGAGGCAATGGAGTAGCTGGAATCATTCTACTAGAATCGAAGGAGAAGGTTATCGCAATCAAGAAAGGAGATGCAATCGCTCTCCCATTTCGCATGGTTTGTTAG

Protein sequence

MIEVVIILDLPRRFQCLVKETSTLLSSPSRGFALPHYFDSAKVAHILRGNGVAGIILLESKEKVIAIKKGDAIALPFRMVC

Homology

[Close]

BLAST of Bhi01M000648 vs. TAIR10
Match: AT1G07750.1 (RmlC-like cupins superfamily protein)

HSP 1 Score: 72.4 bits (176), Expect = 1.4e-13
Identity = 34/56 (60.71%), Postives = 46/56 (82.14%), Query Frame = 0


Query: 25 LSSPSRGFALPHYFDSAKVAHILRGNGVAGIILLESKEKVIAIKKGDAIALPFRMV 81
          L+    GFA+P Y DS+KVA++L+G+G AGI+L E +EKVIAIK+GD+IALPF +V
Sbjct: 42 LALEKNGFAVPRYSDSSKVAYVLQGSGTAGIVLPEKEEKVIAIKQGDSIALPFGVV 97

[Close]

BLAST of Bhi01M000648 vs. TAIR10
Match: AT2G28680.1 (RmlC-like cupins superfamily protein)

HSP 1 Score: 69.7 bits (169), Expect = 9.3e-13
Identity = 34/50 (68.00%), Postives = 41/50 (82.00%), Query Frame = 0


Query: 31 GFALPHYFDSAKVAHILRGNGVAGIILLESKEKVIAIKKGDAIALPFRMV 81
          G ALP Y DS KVA++L+G G AGI+L E +EKVIAIKKGD+IALPF +V
Sbjct: 48 GLALPRYSDSPKVAYVLQGAGTAGIVLPEKEEKVIAIKKGDSIALPFGVV 97

[Close]

BLAST of Bhi01M000648 vs. TrEMBL
Match: tr|A0A0A0K666|A0A0A0K666_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G281380 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 3.9e-13
Identity = 42/56 (75.00%), Postives = 48/56 (85.71%), Query Frame = 0


Query: 25 LSSPSRGFALPHYFDSAKVAHILRGNGVAGIILLESKEKVIAIKKGDAIALPFRMV 81
          L+    GFALP Y DSAKVA++L+GNGVAGIIL ES+EKVIAIKKGDAIALPF +V
Sbjct: 42 LALEKNGFALPRYSDSAKVAYVLQGNGVAGIILPESEEKVIAIKKGDAIALPFGVV 97

[Close]

BLAST of Bhi01M000648 vs. TrEMBL
Match: tr|A0A2I4F8Z8|A0A2I4F8Z8_9ROSI (glutelin type-B 5-like OS=Juglans regia OX=51240 GN=LOC108996597 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 6.6e-13
Identity = 41/56 (73.21%), Postives = 48/56 (85.71%), Query Frame = 0


Query: 25 LSSPSRGFALPHYFDSAKVAHILRGNGVAGIILLESKEKVIAIKKGDAIALPFRMV 81
          L+    GFALP Y DSAKVA++L+GNGVAGI+L ES+EKVIAIKKGDAIALPF +V
Sbjct: 42 LALGKNGFALPRYSDSAKVAYVLQGNGVAGIVLPESEEKVIAIKKGDAIALPFGVV 97

[Close]

BLAST of Bhi01M000648 vs. TrEMBL
Match: tr|A0A2P4I660|A0A2P4I660_QUESU (Glutelin type-b 5 OS=Quercus suber OX=58331 GN=CFP56_02024 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 8.7e-13
Identity = 40/56 (71.43%), Postives = 48/56 (85.71%), Query Frame = 0


Query: 25 LSSPSRGFALPHYFDSAKVAHILRGNGVAGIILLESKEKVIAIKKGDAIALPFRMV 81
          L+    GFALP Y DSAKVA++L+GNGVAGI+L ES+EKV+AIKKGDAIALPF +V
Sbjct: 42 LALDKNGFALPRYSDSAKVAYVLQGNGVAGIVLPESEEKVLAIKKGDAIALPFGVV 97

[Close]

BLAST of Bhi01M000648 vs. TrEMBL
Match: tr|A0A2P4I640|A0A2P4I640_QUESU (Glutelin type-b 5 OS=Quercus suber OX=58331 GN=CFP56_02024 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 8.7e-13
Identity = 40/56 (71.43%), Postives = 48/56 (85.71%), Query Frame = 0


Query: 25 LSSPSRGFALPHYFDSAKVAHILRGNGVAGIILLESKEKVIAIKKGDAIALPFRMV 81
          L+    GFALP Y DSAKVA++L+GNGVAGI+L ES+EKV+AIKKGDAIALPF +V
Sbjct: 42 LALDKNGFALPRYSDSAKVAYVLQGNGVAGIVLPESEEKVLAIKKGDAIALPFGVV 97

[Close]

BLAST of Bhi01M000648 vs. TrEMBL
Match: tr|A0A2N9IRW9|A0A2N9IRW9_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS56109 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 1.1e-12
Identity = 40/56 (71.43%), Postives = 48/56 (85.71%), Query Frame = 0


Query: 25 LSSPSRGFALPHYFDSAKVAHILRGNGVAGIILLESKEKVIAIKKGDAIALPFRMV 81
          L+    GFALP Y DSAKVA++L+GNGVAGI+L E++EKVIAIKKGDAIALPF +V
Sbjct: 42 LAIEKNGFALPRYSDSAKVAYVLQGNGVAGIVLPEAEEKVIAIKKGDAIALPFGVV 97

[Close]

BLAST of Bhi01M000648 vs. NCBI nr
Match: XP_004150394.1 (PREDICTED: glutelin type-B 5-like isoform X1 [Cucumis sativus] >KGN44409.1 hypothetical protein Csa_7G281380 [Cucumis sativus])

HSP 1 Score: 82.8 bits (203), Expect = 5.9e-13
Identity = 42/56 (75.00%), Postives = 48/56 (85.71%), Query Frame = 0


Query: 25 LSSPSRGFALPHYFDSAKVAHILRGNGVAGIILLESKEKVIAIKKGDAIALPFRMV 81
          L+    GFALP Y DSAKVA++L+GNGVAGIIL ES+EKVIAIKKGDAIALPF +V
Sbjct: 42 LALEKNGFALPRYSDSAKVAYVLQGNGVAGIILPESEEKVIAIKKGDAIALPFGVV 97

[Close]

BLAST of Bhi01M000648 vs. NCBI nr
Match: XP_022159414.1 (legumin type B-like, partial [Momordica charantia])

HSP 1 Score: 82.8 bits (203), Expect = 5.9e-13
Identity = 42/56 (75.00%), Postives = 48/56 (85.71%), Query Frame = 0


Query: 25 LSSPSRGFALPHYFDSAKVAHILRGNGVAGIILLESKEKVIAIKKGDAIALPFRMV 81
          L+    GFALP Y DSAKVA++L+GNGVAGIIL ES+EKVIAIKKGDAIALPF +V
Sbjct: 42 LALEKNGFALPRYSDSAKVAYVLQGNGVAGIILPESEEKVIAIKKGDAIALPFGVV 97

[Close]

BLAST of Bhi01M000648 vs. NCBI nr
Match: XP_022932542.1 (glutelin type-D 1-like [Cucurbita moschata])

HSP 1 Score: 82.8 bits (203), Expect = 5.9e-13
Identity = 42/56 (75.00%), Postives = 48/56 (85.71%), Query Frame = 0


Query: 25 LSSPSRGFALPHYFDSAKVAHILRGNGVAGIILLESKEKVIAIKKGDAIALPFRMV 81
          L+    GFALP Y DSAKVA++L+GNGVAGIIL ES+EKVIAIKKGDAIALPF +V
Sbjct: 42 LALEKNGFALPRYSDSAKVAYVLQGNGVAGIILPESEEKVIAIKKGDAIALPFGVV 97

[Close]

BLAST of Bhi01M000648 vs. NCBI nr
Match: XP_022976927.1 (glutelin type-D 1-like [Cucurbita maxima])

HSP 1 Score: 82.8 bits (203), Expect = 5.9e-13
Identity = 42/56 (75.00%), Postives = 48/56 (85.71%), Query Frame = 0


Query: 25 LSSPSRGFALPHYFDSAKVAHILRGNGVAGIILLESKEKVIAIKKGDAIALPFRMV 81
          L+    GFALP Y DSAKVA++L+GNGVAGIIL ES+EKVIAIKKGDAIALPF +V
Sbjct: 42 LALEKNGFALPRYSDSAKVAYVLQGNGVAGIILPESEEKVIAIKKGDAIALPFGVV 97

[Close]

BLAST of Bhi01M000648 vs. NCBI nr
Match: XP_023535755.1 (glutelin type-D 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 82.8 bits (203), Expect = 5.9e-13
Identity = 42/56 (75.00%), Postives = 48/56 (85.71%), Query Frame = 0


Query: 25 LSSPSRGFALPHYFDSAKVAHILRGNGVAGIILLESKEKVIAIKKGDAIALPFRMV 81
          L+    GFALP Y DSAKVA++L+GNGVAGIIL ES+EKVIAIKKGDAIALPF +V
Sbjct: 42 LALEKNGFALPRYSDSAKVAYVLQGNGVAGIILPESEEKVIAIKKGDAIALPFGVV 97

The following BLAST results are available for this feature:

BLAST of Bhi01M000648 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G07750.1	1.4e-13	60.71	RmlC-like cupins superfamily protein	[more]
AT2G28680.1	9.3e-13	68.00	RmlC-like cupins superfamily protein	[more]

BLAST of Bhi01M000648 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Bhi01M000648 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0K666\|A0A0A0K666_CUCSA	3.9e-13	75.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G281380 PE=4 SV=1	[more]
tr\|A0A2I4F8Z8\|A0A2I4F8Z8_9ROSI	6.6e-13	73.21	glutelin type-B 5-like OS=Juglans regia OX=51240 GN=LOC108996597 PE=4 SV=1	[more]
tr\|A0A2P4I660\|A0A2P4I660_QUESU	8.7e-13	71.43	Glutelin type-b 5 OS=Quercus suber OX=58331 GN=CFP56_02024 PE=4 SV=1	[more]
tr\|A0A2P4I640\|A0A2P4I640_QUESU	8.7e-13	71.43	Glutelin type-b 5 OS=Quercus suber OX=58331 GN=CFP56_02024 PE=4 SV=1	[more]
tr\|A0A2N9IRW9\|A0A2N9IRW9_FAGSY	1.1e-12	71.43	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS56109 PE=4 SV=1	[more]

BLAST of Bhi01M000648 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004150394.1	5.9e-13	75.00	PREDICTED: glutelin type-B 5-like isoform X1 [Cucumis sativus] >KGN44409.1 hypot...	[more]
XP_022159414.1	5.9e-13	75.00	legumin type B-like, partial [Momordica charantia]	[more]
XP_022932542.1	5.9e-13	75.00	glutelin type-D 1-like [Cucurbita moschata]	[more]
XP_022976927.1	5.9e-13	75.00	glutelin type-D 1-like [Cucurbita maxima]	[more]
XP_023535755.1	5.9e-13	75.00	glutelin type-D 1-like [Cucurbita pepo subsp. pepo]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **Molecular Function**
Term	Definition
GO:0045735	nutrient reservoir activity

Vocabulary: **INTERPRO**
Term	Definition
IPR011051	RmlC_Cupin_sf
IPR006045	Cupin_1
IPR014710	RmlC-like_jellyroll

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0045735	nutrient reservoir activity

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Bhi01G000648	Bhi01G000648	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Bhi01M000648.exon1	Bhi01M000648.exon1	exon
Bhi01M000648.exon2	Bhi01M000648.exon2	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.Bhi01M000648	cds.Bhi01M000648	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Bhi01M000648	Bhi01M000648-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR014710	RmlC-like jelly roll fold	GENE3D	G3DSA:2.60.120.10		coord: 10..80 e-value: 1.5E-8 score: 36.1
IPR006045	Cupin 1	PFAM	PF00190	Cupin_1	coord: 28..80 e-value: 7.6E-6 score: 25.5
None	No IPR available	PANTHER	PTHR31189:SF24	SUBFAMILY NOT NAMED	coord: 29..80
None	No IPR available	PANTHER	PTHR31189	FAMILY NOT NAMED	coord: 29..80
IPR011051	RmlC-like cupin domain superfamily	SUPERFAMILY	SSF51182	RmlC-like cupins	coord: 25..79