MELO3C035316.2 (gene) Melon (DHL92) v3.6.1

NameMELO3C035316.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionATP synthase subunit alpha
Locationchr12 : 4323669 .. 4324024 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTAGAATTTGTCAGTGGTGTCAAAGGAATAGCCTTAAATCTTGAGAATGAGAATGTATGGATTGTTGTCTTTGGTAGTGATATCGCTATTAAAGAAGGAGATCTTGTCAAGCACACTGGATCGATTGTGGATATTCCAGCAAGGTTATGCTTGGGTGTATGGTCGGCACCTTGGGAGCACCTATTGATGGAAGAGGGGCTTTCAGCGATCATGAGCGAAGACGTATCAAAGTGAAAGCCCTTGGGATAATTTAACGTAAATCAGTGCACGAGCCTATGGAAATAGGGTTAAAAGCGGTGGATAGCCTGGTTCCTGTAGGTAAGAGCCAACGAGAACTGATAATCAAGAAGCGA

mRNA sequence

ATGGTAGAATTTGTCAGTGGTGTCAAAGGAATAGCCTTAAATCTTGAGAATGAGAATGTATGGATTGTTGTCTTTGGTAGTGATATCGCTATTAAAGAAGGAGATCTTGTCAAGCACACTGGATCGATTGTGGATATTCCAGCAAGGTTATGCTTGGGTGTATGGTCGGCACCTTGGGAGCACCTATTGATGGAAGAGGGGCTTTCAGCGATCATGAGCGAAGACGTATCAAAGTGAAAGCCCTTGGGATAATTTAACGTAAATCAGTGCACGAGCCTATGGAAATAGGGTTAAAAGCGGTGGATAGCCTGGTTCCTGTAGGTAAGAGCCAACGAGAACTGATAATCAAGAAGCGA

Coding sequence (CDS)

ATGGTAGAATTTGTCAGTGGTGTCAAAGGAATAGCCTTAAATCTTGAGAATGAGAATGTATGGATTGTTGTCTTTGGTAGTGATATCGCTATTAAAGAAGGAGATCTTGTCAAGCACACTGGATCGATTGTGGATATTCCAGCAAGGTTATGCTTGGGTGTATGGTCGGCACCTTGGGAGCACCTATTGATGGAAGAGGGGCTTTCAGCGATCATGAGCGAAGACGTATCAAAGTGA

Protein sequence

MVEFVSGVKGIALNLENENVWIVVFGSDIAIKEGDLVKHTGSIVDIPARLCLGVWSAPWEHLLMEEGLSAIMSEDVSK
BLAST of MELO3C035316.2 vs. NCBI nr
Match: KGN50911.1 (hypothetical protein Csa_5G321490 [Cucumis sativus])

HSP 1 Score: 109.8 bits (273), Expect = 4.3e-21
Identity = 54/68 (79.41%), Postives = 59/68 (86.76%), Query Frame = 0

Query: 1  MVEFVSGVKGIALNLENENVWIVVFGSDIAIKEGDLVKHTGSIVDI-PARLCLGVWSAPW 60
          MVEF SGVKGIALNLENENV I++FGSD AIKEGDLVK T SIVD+   RLCLGVWS PW
Sbjct: 25 MVEFSSGVKGIALNLENENVGIIIFGSDTAIKEGDLVKRTRSIVDVLRERLCLGVWSTPW 84

Query: 61 EHLLMEEG 68
          ++LLMEEG
Sbjct: 85 KYLLMEEG 92

BLAST of MELO3C035316.2 vs. NCBI nr
Match: AAF17049.1 (ATPase alpha subunit, partial (mitochondrion) [Alisma plantago-aquatica])

HSP 1 Score: 90.1 bits (222), Expect = 3.5e-15
Identity = 45/52 (86.54%), Postives = 46/52 (88.46%), Query Frame = 0

Query: 1  MVEFVSGVKGIALNLENENVWIVVFGSDIAIKEGDLVKHTGSIVDIPARLCL 53
          MVEF SGVKGIALNLENENV IVVFGSD AIKEGDLVK TGSIVD+PA  CL
Sbjct: 17 MVEFASGVKGIALNLENENVGIVVFGSDTAIKEGDLVKRTGSIVDVPAGKCL 68

BLAST of MELO3C035316.2 vs. NCBI nr
Match: ABI75160.1 (ATPase alpha subunit, partial (mitochondrion) [Baldellia ranunculoides])

HSP 1 Score: 89.0 bits (219), Expect = 7.9e-15
Identity = 44/52 (84.62%), Postives = 46/52 (88.46%), Query Frame = 0

Query: 1  MVEFVSGVKGIALNLENENVWIVVFGSDIAIKEGDLVKHTGSIVDIPARLCL 53
          MVEF SGVKGIALNLENENV IVVFG+D AIKEGDLVK TGSIVD+PA  CL
Sbjct: 12 MVEFASGVKGIALNLENENVGIVVFGNDTAIKEGDLVKRTGSIVDVPAGKCL 63

BLAST of MELO3C035316.2 vs. NCBI nr
Match: ADQ28320.1 (ATPase subunit 1, partial (mitochondrion) [Luronium natans])

HSP 1 Score: 88.2 bits (217), Expect = 1.3e-14
Identity = 44/52 (84.62%), Postives = 45/52 (86.54%), Query Frame = 0

Query: 1  MVEFVSGVKGIALNLENENVWIVVFGSDIAIKEGDLVKHTGSIVDIPARLCL 53
          MVEF  GVKGIALNLENENV IVVFGSD AIKEGDLVK TGSIVD+PA  CL
Sbjct: 12 MVEFACGVKGIALNLENENVGIVVFGSDTAIKEGDLVKRTGSIVDVPAGKCL 63

BLAST of MELO3C035316.2 vs. NCBI nr
Match: ANY30762.1 (ATPase subunit 1, partial (mitochondrion) [Luronium natans])

HSP 1 Score: 88.2 bits (217), Expect = 1.3e-14
Identity = 44/52 (84.62%), Postives = 45/52 (86.54%), Query Frame = 0

Query: 1  MVEFVSGVKGIALNLENENVWIVVFGSDIAIKEGDLVKHTGSIVDIPARLCL 53
          MVEF  GVKGIALNLENENV IVVFGSD AIKEGDLVK TGSIVD+PA  CL
Sbjct: 35 MVEFACGVKGIALNLENENVGIVVFGSDTAIKEGDLVKRTGSIVDVPAGKCL 86

BLAST of MELO3C035316.2 vs. TAIR10
Match: AT2G07698.1 (ATPase, F1 complex, alpha subunit protein)

HSP 1 Score: 79.3 bits (194), Expect = 1.1e-15
Identity = 39/48 (81.25%), Postives = 42/48 (87.50%), Query Frame = 0

Query: 1   MVEFVSGVKGIALNLENENVWIVVFGSDIAIKEGDLVKHTGSIVDIPA 49
           MV F +GVKG+ALNLENENV IVVFG D AIKEGDLVK TGSIVD+PA
Sbjct: 324 MVLFANGVKGMALNLENENVGIVVFGGDTAIKEGDLVKRTGSIVDVPA 371

BLAST of MELO3C035316.2 vs. TAIR10
Match: ATMG01190.1 (ATP synthase subunit 1)

HSP 1 Score: 79.3 bits (194), Expect = 1.1e-15
Identity = 39/48 (81.25%), Postives = 42/48 (87.50%), Query Frame = 0

Query: 1   MVEFVSGVKGIALNLENENVWIVVFGSDIAIKEGDLVKHTGSIVDIPA 49
           MV F +GVKG+ALNLENENV IVVFG D AIKEGDLVK TGSIVD+PA
Sbjct: 54  MVLFANGVKGMALNLENENVGIVVFGGDTAIKEGDLVKRTGSIVDVPA 101

BLAST of MELO3C035316.2 vs. TAIR10
Match: ATCG00120.1 (ATP synthase subunit alpha)

HSP 1 Score: 52.0 bits (123), Expect = 1.9e-07
Identity = 25/47 (53.19%), Postives = 31/47 (65.96%), Query Frame = 0

Query: 1  MVEFVSGVKGIALNLENENVWIVVFGSDIAIKEGDLVKHTGSIVDIP 48
          +VEF  G  GIALNLE+ NV +V+ G  + I+EG  VK TG I  IP
Sbjct: 53 LVEFEEGTIGIALNLESNNVGVVLMGDGLMIQEGSSVKATGKIAQIP 99

BLAST of MELO3C035316.2 vs. Swiss-Prot
Match: sp|Q06735|ATPAM_BETVU (ATP synthase subunit alpha, mitochondrial OS=Beta vulgaris OX=161934 GN=ATPA PE=3 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 1.7e-16
Identity = 43/48 (89.58%), Postives = 44/48 (91.67%), Query Frame = 0

Query: 1   MVEFVSGVKGIALNLENENVWIVVFGSDIAIKEGDLVKHTGSIVDIPA 49
           MVEF SGVKGIALNLENENV IVVFGSD AIKEGDLVK TGSIVD+PA
Sbjct: 54  MVEFASGVKGIALNLENENVGIVVFGSDTAIKEGDLVKRTGSIVDVPA 101

BLAST of MELO3C035316.2 vs. Swiss-Prot
Match: sp|P18260|ATPAM_HELAN (ATP synthase subunit alpha, mitochondrial OS=Helianthus annuus OX=4232 GN=ATPA PE=3 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 1.7e-16
Identity = 43/48 (89.58%), Postives = 44/48 (91.67%), Query Frame = 0

Query: 1   MVEFVSGVKGIALNLENENVWIVVFGSDIAIKEGDLVKHTGSIVDIPA 49
           MVEF SGVKGIALNLENENV IVVFGSD AIKEGDLVK TGSIVD+PA
Sbjct: 54  MVEFASGVKGIALNLENENVGIVVFGSDTAIKEGDLVKRTGSIVDVPA 101

BLAST of MELO3C035316.2 vs. Swiss-Prot
Match: sp|P05494|ATPAM_MAIZE (ATP synthase subunit alpha, mitochondrial OS=Zea mays OX=4577 GN=ATPA PE=3 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 1.7e-16
Identity = 43/48 (89.58%), Postives = 44/48 (91.67%), Query Frame = 0

Query: 1   MVEFVSGVKGIALNLENENVWIVVFGSDIAIKEGDLVKHTGSIVDIPA 49
           MVEF SGVKGIALNLENENV IVVFGSD AIKEGDLVK TGSIVD+PA
Sbjct: 54  MVEFASGVKGIALNLENENVGIVVFGSDTAIKEGDLVKRTGSIVDVPA 101

BLAST of MELO3C035316.2 vs. Swiss-Prot
Match: sp|P05495|ATPAM_NICPL (ATP synthase subunit alpha, mitochondrial OS=Nicotiana plumbaginifolia OX=4092 GN=ATPA PE=3 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 1.7e-16
Identity = 43/48 (89.58%), Postives = 44/48 (91.67%), Query Frame = 0

Query: 1   MVEFVSGVKGIALNLENENVWIVVFGSDIAIKEGDLVKHTGSIVDIPA 49
           MVEF SGVKGIALNLENENV IVVFGSD AIKEGDLVK TGSIVD+PA
Sbjct: 54  MVEFASGVKGIALNLENENVGIVVFGSDTAIKEGDLVKRTGSIVDVPA 101

BLAST of MELO3C035316.2 vs. Swiss-Prot
Match: sp|P05492|ATPAM_OENBI (ATP synthase subunit alpha, mitochondrial OS=Oenothera biennis OX=3942 GN=ATPA PE=3 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 1.7e-16
Identity = 43/48 (89.58%), Postives = 44/48 (91.67%), Query Frame = 0

Query: 1   MVEFVSGVKGIALNLENENVWIVVFGSDIAIKEGDLVKHTGSIVDIPA 49
           MVEF SGVKGIALNLENENV IVVFGSD AIKEGDLVK TGSIVD+PA
Sbjct: 54  MVEFASGVKGIALNLENENVGIVVFGSDTAIKEGDLVKRTGSIVDVPA 101

BLAST of MELO3C035316.2 vs. TrEMBL
Match: tr|A0A0A0KT56|A0A0A0KT56_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G321490 PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 2.9e-21
Identity = 54/68 (79.41%), Postives = 59/68 (86.76%), Query Frame = 0

Query: 1  MVEFVSGVKGIALNLENENVWIVVFGSDIAIKEGDLVKHTGSIVDI-PARLCLGVWSAPW 60
          MVEF SGVKGIALNLENENV I++FGSD AIKEGDLVK T SIVD+   RLCLGVWS PW
Sbjct: 25 MVEFSSGVKGIALNLENENVGIIIFGSDTAIKEGDLVKRTRSIVDVLRERLCLGVWSTPW 84

Query: 61 EHLLMEEG 68
          ++LLMEEG
Sbjct: 85 KYLLMEEG 92

BLAST of MELO3C035316.2 vs. TrEMBL
Match: tr|Q9T713|Q9T713_ALIPL (ATP synthase subunit alpha (Fragment) OS=Alisma plantago-aquatica OX=15000 GN=atp1 PE=3 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 2.3e-15
Identity = 45/52 (86.54%), Postives = 46/52 (88.46%), Query Frame = 0

Query: 1  MVEFVSGVKGIALNLENENVWIVVFGSDIAIKEGDLVKHTGSIVDIPARLCL 53
          MVEF SGVKGIALNLENENV IVVFGSD AIKEGDLVK TGSIVD+PA  CL
Sbjct: 17 MVEFASGVKGIALNLENENVGIVVFGSDTAIKEGDLVKRTGSIVDVPAGKCL 68

BLAST of MELO3C035316.2 vs. TrEMBL
Match: tr|A7J178|A7J178_BALRA (ATP synthase subunit alpha (Fragment) OS=Baldellia ranunculoides OX=55328 GN=atp1 PE=3 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 5.2e-15
Identity = 44/52 (84.62%), Postives = 46/52 (88.46%), Query Frame = 0

Query: 1  MVEFVSGVKGIALNLENENVWIVVFGSDIAIKEGDLVKHTGSIVDIPARLCL 53
          MVEF SGVKGIALNLENENV IVVFG+D AIKEGDLVK TGSIVD+PA  CL
Sbjct: 12 MVEFASGVKGIALNLENENVGIVVFGNDTAIKEGDLVKRTGSIVDVPAGKCL 63

BLAST of MELO3C035316.2 vs. TrEMBL
Match: tr|I1SZK5|I1SZK5_9LILI (ATP synthase subunit alpha (Fragment) OS=Alisma gramineum OX=365729 GN=atp1 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 8.9e-15
Identity = 44/51 (86.27%), Postives = 45/51 (88.24%), Query Frame = 0

Query: 2  VEFVSGVKGIALNLENENVWIVVFGSDIAIKEGDLVKHTGSIVDIPARLCL 53
          VEF SGVKGIALNLENENV IVVFGSD AIKEGDLVK TGSIVD+PA  CL
Sbjct: 1  VEFASGVKGIALNLENENVGIVVFGSDTAIKEGDLVKRTGSIVDVPAGKCL 51

BLAST of MELO3C035316.2 vs. TrEMBL
Match: tr|A0A1B2ART0|A0A1B2ART0_LURNA (ATP synthase subunit alpha (Fragment) OS=Luronium natans OX=55479 GN=atp1 PE=3 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 8.9e-15
Identity = 44/52 (84.62%), Postives = 45/52 (86.54%), Query Frame = 0

Query: 1  MVEFVSGVKGIALNLENENVWIVVFGSDIAIKEGDLVKHTGSIVDIPARLCL 53
          MVEF  GVKGIALNLENENV IVVFGSD AIKEGDLVK TGSIVD+PA  CL
Sbjct: 35 MVEFACGVKGIALNLENENVGIVVFGSDTAIKEGDLVKRTGSIVDVPAGKCL 86

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN50911.14.3e-2179.41hypothetical protein Csa_5G321490 [Cucumis sativus][more]
AAF17049.13.5e-1586.54ATPase alpha subunit, partial (mitochondrion) [Alisma plantago-aquatica][more]
ABI75160.17.9e-1584.62ATPase alpha subunit, partial (mitochondrion) [Baldellia ranunculoides][more]
ADQ28320.11.3e-1484.62ATPase subunit 1, partial (mitochondrion) [Luronium natans][more]
ANY30762.11.3e-1484.62ATPase subunit 1, partial (mitochondrion) [Luronium natans][more]
Match NameE-valueIdentityDescription
AT2G07698.11.1e-1581.25ATPase, F1 complex, alpha subunit protein[more]
ATMG01190.11.1e-1581.25ATP synthase subunit 1[more]
ATCG00120.11.9e-0753.19ATP synthase subunit alpha[more]
Match NameE-valueIdentityDescription
sp|Q06735|ATPAM_BETVU1.7e-1689.58ATP synthase subunit alpha, mitochondrial OS=Beta vulgaris OX=161934 GN=ATPA PE=... [more]
sp|P18260|ATPAM_HELAN1.7e-1689.58ATP synthase subunit alpha, mitochondrial OS=Helianthus annuus OX=4232 GN=ATPA P... [more]
sp|P05494|ATPAM_MAIZE1.7e-1689.58ATP synthase subunit alpha, mitochondrial OS=Zea mays OX=4577 GN=ATPA PE=3 SV=1[more]
sp|P05495|ATPAM_NICPL1.7e-1689.58ATP synthase subunit alpha, mitochondrial OS=Nicotiana plumbaginifolia OX=4092 G... [more]
sp|P05492|ATPAM_OENBI1.7e-1689.58ATP synthase subunit alpha, mitochondrial OS=Oenothera biennis OX=3942 GN=ATPA P... [more]
Match NameE-valueIdentityDescription
tr|A0A0A0KT56|A0A0A0KT56_CUCSA2.9e-2179.41Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G321490 PE=4 SV=1[more]
tr|Q9T713|Q9T713_ALIPL2.3e-1586.54ATP synthase subunit alpha (Fragment) OS=Alisma plantago-aquatica OX=15000 GN=at... [more]
tr|A7J178|A7J178_BALRA5.2e-1584.62ATP synthase subunit alpha (Fragment) OS=Baldellia ranunculoides OX=55328 GN=atp... [more]
tr|I1SZK5|I1SZK5_9LILI8.9e-1586.27ATP synthase subunit alpha (Fragment) OS=Alisma gramineum OX=365729 GN=atp1 PE=4... [more]
tr|A0A1B2ART0|A0A1B2ART0_LURNA8.9e-1584.62ATP synthase subunit alpha (Fragment) OS=Luronium natans OX=55479 GN=atp1 PE=3 S... [more]
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:1902600hydrogen ion transmembrane transport
GO:0046034ATP metabolic process
Vocabulary: INTERPRO
TermDefinition
IPR036121ATPase_F1/V1/A1_a/bsu_N_sf
IPR023366ATP_synth_asu-like_sf
IPR004100ATPase_F1/V1/A1_a/bsu_N
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006754 ATP biosynthetic process
biological_process GO:0046034 ATP metabolic process
biological_process GO:0015986 ATP synthesis coupled proton transport
biological_process GO:0006811 ion transport
biological_process GO:0015992 proton transport
biological_process GO:0006810 transport
biological_process GO:1902600 hydrogen ion transmembrane transport
cellular_component GO:0005739 mitochondrion
cellular_component GO:0045261 proton-transporting ATP synthase complex, catalytic core F(1)
molecular_function GO:0032559 adenyl ribonucleotide binding
molecular_function GO:0005524 ATP binding
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0046933 proton-transporting ATP synthase activity, rotational mechanism

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C035316.2.1MELO3C035316.2.1mRNA


Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004100ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domainPFAMPF02874ATP-synt_ab_Ncoord: 2..41
e-value: 6.7E-8
score: 32.8
IPR023366ATP synthase subunit alpha, N-terminal domain-like superfamilyGENE3DG3DSA:2.40.30.20coord: 1..43
e-value: 3.0E-15
score: 57.5
NoneNo IPR availablePANTHERPTHR43089FAMILY NOT NAMEDcoord: 1..48
NoneNo IPR availablePANTHERPTHR43089:SF5ATP SYNTHASE SUBUNIT ALPHAcoord: 1..48
IPR036121ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain superfamilySUPERFAMILYSSF50615N-terminal domain of alpha and beta subunits of F1 ATP synthasecoord: 1..43