MELO3C035021.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C035021.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	Unknown protein
Location	chr11 : 16624982 .. 16625173 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACAGAATCTCGTAGCGGTTTTCATATCGGCAACGCTGGCTCCTCCGCCGCATCTGGAGCAAATTCCAGGCGCCGGCCTACTCCGCCGCACCTTCCGCTTCTGATCCACCATAAAGCAAAAGAAAACCATGGTGTCGTCCTCGGAGCTTTGTTGGTTGGGAATGAAAACTATGGGCTCAGTGAGGAGTAG

mRNA sequence

ATGACAGAATCTCGTAGCGGTTTTCATATCGGCAACGCTGGCTCCTCCGCCGCATCTGGAGCAAATTCCAGGCGCCGGCCTACTCCGCCGCACCTTCCGCTTCTGATCCACCATAAAGCAAAAGAAAACCATGGTGTCGTCCTCGGAGCTTTGTTGGTTGGGAATGAAAACTATGGGCTCAGTGAGGAGTAG

Coding sequence (CDS)

ATGACAGAATCTCGTAGCGGTTTTCATATCGGCAACGCTGGCTCCTCCGCCGCATCTGGAGCAAATTCCAGGCGCCGGCCTACTCCGCCGCACCTTCCGCTTCTGATCCACCATAAAGCAAAAGAAAACCATGGTGTCGTCCTCGGAGCTTTGTTGGTTGGGAATGAAAACTATGGGCTCAGTGAGGAGTAG

Protein sequence

MTESRSGFHIGNAGSSAASGANSRRRPTPPHLPLLIHHKAKENHGVVLGALLVGNENYGLSEE

Homology

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BLAST of MELO3C035021.2 vs. NCBI nr
Match: KGN46698.1 (hypothetical protein Csa_6G124130 [Cucumis sativus])

HSP 1 Score: 101.3 bits (251), Expect = 1.2e-18
Identity = 51/62 (82.26%), Postives = 53/62 (85.48%), Query Frame = 0


Query: 1  MTESRSGFHIGNAGSSAASGANSRRRPTPPHLPLLIHHKAKENHGVVLGALLVGNENYGL 60
          MTES SGFHIGNAGSS ASGANSR RPT  HLPLLIHHKAKENHGVV+GA LVGNE   +
Sbjct: 1  MTESNSGFHIGNAGSSTASGANSRGRPTSAHLPLLIHHKAKENHGVVVGASLVGNEKLEV 60

Query: 61 SE 63
          SE
Sbjct: 61 SE 62

[Close]

BLAST of MELO3C035021.2 vs. TrEMBL
Match: tr|A0A0A0KAZ7|A0A0A0KAZ7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G124130 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 8.2e-19
Identity = 51/62 (82.26%), Postives = 53/62 (85.48%), Query Frame = 0


Query: 1  MTESRSGFHIGNAGSSAASGANSRRRPTPPHLPLLIHHKAKENHGVVLGALLVGNENYGL 60
          MTES SGFHIGNAGSS ASGANSR RPT  HLPLLIHHKAKENHGVV+GA LVGNE   +
Sbjct: 1  MTESNSGFHIGNAGSSTASGANSRGRPTSAHLPLLIHHKAKENHGVVVGASLVGNEKLEV 60

Query: 61 SE 63
          SE
Sbjct: 61 SE 62

The following BLAST results are available for this feature:

BLAST of MELO3C035021.2 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN46698.1	1.2e-18	82.26	hypothetical protein Csa_6G124130 [Cucumis sativus]	[more]

BLAST of MELO3C035021.2 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of MELO3C035021.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C035021.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KAZ7\|A0A0A0KAZ7_CUCSA	8.2e-19	82.26	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G124130 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C035021.2.1	MELO3C035021.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..23
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..32

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C035021.2	Csa6G124130	Cucumber (Chinese Long) v2	cumedB431
MELO3C035021.2	CsGy6G010190	Cucumber (Gy14) v2	cgybmedB368

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C035021.2	Cucumber (Gy14) v2	cgybmedB390
MELO3C035021.2	Cucumber (Gy14) v1	cgymedB176
MELO3C035021.2	Cucumber (Gy14) v1	cgymedB177
MELO3C035021.2	Cucurbita moschata (Rifu)	cmomedB566
MELO3C035021.2	Cucurbita pepo (Zucchini)	cpemedB309
MELO3C035021.2	Wild cucumber (PI 183967)	cpimedB414
MELO3C035021.2	Wild cucumber (PI 183967)	cpimedB440
MELO3C035021.2	Cucumber (Chinese Long) v2	cumedB405
MELO3C035021.2	Bottle gourd (USVL1VR-Ls)	lsimedB053
MELO3C035021.2	Watermelon (Charleston Gray)	medwcgB105
MELO3C035021.2	Watermelon (97103) v1	medwmB123
MELO3C035021.2	Cucumber (Chinese Long) v3	cucmedB421
MELO3C035021.2	Cucumber (Chinese Long) v3	cucmedB444
MELO3C035021.2	Watermelon (97103) v2	medwmbB104