Csa6G124130 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa6G124130
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr6 : 8569517 .. 8569933 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GGCCACTGAGCTATAAAATGAACAAATTCCGACTACAAATAAGGCATGTTAAATTACAATTAGTGTCTTAGATGAAAAAAAAAAACGTTGAAAAAATGGAAGGAAATAAATAAATTAGCGATAAGATCGAAGAACAGATCCACAAAAGGTACAGATGAGGGCTCTCCAAGATTTCCAATAAAATGGAACATGACAGAATCTAACAGCGGTTTTCATATCGGCAACGCTGGCTCCTCCACCGCATCTGGCGCAAATTCCAGGGGCCGGCCTACTTCGGCGCACCTTCCGCTTCTGATCCACCATAAAGCAAAAGAAAACCATGGTGTGGTGGTCGGAGCTTCGTTGGTTGGGAATGAAAAGCTTGAGGTCAGTGAACATATTTATAGGGACGTAGAACGCGGGCAGTGTGTAGGTTAA

mRNA sequence

ATGACAGAATCTAACAGCGGTTTTCATATCGGCAACGCTGGCTCCTCCACCGCATCTGGCGCAAATTCCAGGGGCCGGCCTACTTCGGCGCACCTTCCGCTTCTGATCCACCATAAAGCAAAAGAAAACCATGGTGTGGTGGTCGGAGCTTCGTTGGTTGGGAATGAAAAGCTTGAGGTCAGTGAACATATTTATAGGGACGTAGAACGCGGGCAGTGTGTAGGTTAA

Coding sequence (CDS)

ATGACAGAATCTAACAGCGGTTTTCATATCGGCAACGCTGGCTCCTCCACCGCATCTGGCGCAAATTCCAGGGGCCGGCCTACTTCGGCGCACCTTCCGCTTCTGATCCACCATAAAGCAAAAGAAAACCATGGTGTGGTGGTCGGAGCTTCGTTGGTTGGGAATGAAAAGCTTGAGGTCAGTGAACATATTTATAGGGACGTAGAACGCGGGCAGTGTGTAGGTTAA

Protein sequence

MTESNSGFHIGNAGSSTASGANSRGRPTSAHLPLLIHHKAKENHGVVVGASLVGNEKLEVSEHIYRDVERGQCVG*
Homology
[Close]
BLAST of Csa6G124130 vs. TrEMBL
Match: A0A0A0KAZ7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G124130 PE=4 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 4.1e-35
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 1 

Query: 1  MTESNSGFHIGNAGSSTASGANSRGRPTSAHLPLLIHHKAKENHGVVVGASLVGNEKLEV 60
          MTESNSGFHIGNAGSSTASGANSRGRPTSAHLPLLIHHKAKENHGVVVGASLVGNEKLEV
Sbjct: 1  MTESNSGFHIGNAGSSTASGANSRGRPTSAHLPLLIHHKAKENHGVVVGASLVGNEKLEV 60

Query: 61 SEHIYRDVERGQCVG 76
          SEHIYRDVERGQCVG
Sbjct: 61 SEHIYRDVERGQCVG 75

[Close]
BLAST of Csa6G124130 vs. NCBI nr
Match: gi|700191494|gb|KGN46698.1| (hypothetical protein Csa_6G124130 [Cucumis sativus])

HSP 1 Score: 154.8 bits (390), Expect = 5.9e-35
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 1 

Query: 1  MTESNSGFHIGNAGSSTASGANSRGRPTSAHLPLLIHHKAKENHGVVVGASLVGNEKLEV 60
          MTESNSGFHIGNAGSSTASGANSRGRPTSAHLPLLIHHKAKENHGVVVGASLVGNEKLEV
Sbjct: 1  MTESNSGFHIGNAGSSTASGANSRGRPTSAHLPLLIHHKAKENHGVVVGASLVGNEKLEV 60

Query: 61 SEHIYRDVERGQCVG 76
          SEHIYRDVERGQCVG
Sbjct: 61 SEHIYRDVERGQCVG 75

The following BLAST results are available for this feature:
BLAST of Csa6G124130 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KAZ7_CUCSA4.1e-35100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G124130 PE=4 SV=1[more]
BLAST of Csa6G124130 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700191494|gb|KGN46698.1|5.9e-35100.00hypothetical protein Csa_6G124130 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU178004cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa6G124130.1Csa6G124130.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU178004CU178004transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa6G124130MELO3C035021.2Melon (DHL92) v3.6.1cumedB431
Csa6G124130CsGy6G010190Cucumber (Gy14) v2cgybcuB282
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa6G124130Melon (DHL92) v3.5.1cumeB425
Csa6G124130Melon (DHL92) v3.5.1cumeB451
Csa6G124130Watermelon (Charleston Gray)cuwcgB445
Csa6G124130Watermelon (97103) v1cuwmB519
Csa6G124130Bottle gourd (USVL1VR-Ls)culsiB409
Csa6G124130Bottle gourd (USVL1VR-Ls)culsiB423
Csa6G124130Bottle gourd (USVL1VR-Ls)culsiB424
Csa6G124130Melon (DHL92) v3.6.1cumedB405
Csa6G124130Watermelon (97103) v2cuwmbB435
Csa6G124130Watermelon (97103) v2cuwmbB439
Csa6G124130Watermelon (97103) v2cuwmbB446
Csa6G124130Wax gourdcuwgoB600
Csa6G124130Wax gourdcuwgoB612
Csa6G124130Wax gourdcuwgoB618
Csa6G124130Cucumber (Gy14) v1cgycuB155
Csa6G124130Cucurbita maxima (Rimu)cmacuB636
Csa6G124130Cucurbita moschata (Rifu)cmocuB626