MELO3C034924.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C034924.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	flocculation protein FLO11-like
Location	chr11 : 9808793 .. 9809041 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGATGGTGTTGAGATTTGCCCCTGGTGATCATAATGTCGAAGTTCCTGTTGCTGATACTGTTGATCCAAGTGCTCAACAAGAAACTCCATTAGTTCCTACAGAACCAAAGCCGTCTAGGAAGAAAGGTCAACAACTTCGAAGAAACATTACTACCAAAGCTGGTCGAAAGAAAATTCCTCTCAATATTCCATCAATCCAAATTGATGGTATATCATTTCATCTTGAGGAAAACGTACAGCGTTAG

mRNA sequence

ATGTCGATGGTGTTGAGATTTGCCCCTGGTGATCATAATGTCGAAGTTCCTGTTGCTGATACTGTTGATCCAAGTGCTCAACAAGAAACTCCATTAGTTCCTACAGAACCAAAGCCGTCTAGGAAGAAAGGTCAACAACTTCGAAGAAACATTACTACCAAAGCTGGTCGAAAGAAAATTCCTCTCAATATTCCATCAATCCAAATTGATGGTATATCATTTCATCTTGAGGAAAACGTACAGCGTTAG

Coding sequence (CDS)

ATGTCGATGGTGTTGAGATTTGCCCCTGGTGATCATAATGTCGAAGTTCCTGTTGCTGATACTGTTGATCCAAGTGCTCAACAAGAAACTCCATTAGTTCCTACAGAACCAAAGCCGTCTAGGAAGAAAGGTCAACAACTTCGAAGAAACATTACTACCAAAGCTGGTCGAAAGAAAATTCCTCTCAATATTCCATCAATCCAAATTGATGGTATATCATTTCATCTTGAGGAAAACGTACAGCGTTAG

Protein sequence

MSMVLRFAPGDHNVEVPVADTVDPSAQQETPLVPTEPKPSRKKGQQLRRNITTKAGRKKIPLNIPSIQIDGISFHLEENVQR

Homology

[Close]

BLAST of MELO3C034924.2 vs. NCBI nr
Match: XP_008437685.1 (PREDICTED: uncharacterized protein LOC103483026 [Cucumis melo])

HSP 1 Score: 134.4 bits (337), Expect = 1.7e-28
Identity = 70/76 (92.11%), Postives = 71/76 (93.42%), Query Frame = 0


Query: 8   APGDHNVEVPVADTVDPSAQQETPLVPTEPKPSRKKGQQLRRNITTKAGRKKIPLNIPSI 67
           APGDHN EVPVADTVDPSAQQET  VPTEPKPSRKKGQQLRRNITTKAGRKKIPLNIPS+
Sbjct: 135 APGDHNDEVPVADTVDPSAQQETLSVPTEPKPSRKKGQQLRRNITTKAGRKKIPLNIPSV 194

Query: 68  QI-DGISFHLEENVQR 83
            I DGISFHLEENVQR
Sbjct: 195 PIVDGISFHLEENVQR 210

[Close]

BLAST of MELO3C034924.2 vs. NCBI nr
Match: XP_008454699.1 (PREDICTED: uncharacterized protein LOC103495053 [Cucumis melo])

HSP 1 Score: 125.6 bits (314), Expect = 8.0e-26
Identity = 62/75 (82.67%), Postives = 67/75 (89.33%), Query Frame = 0


Query: 8   APGDHNVEVPVADTVDPSAQQETPLVPTEPKPSRKKGQQLRRNITTKAGRKKIPLNIPSI 67
           APGD+N EVPVADTVDP AQQE   VPTE KP+RKKGQQ+RRNITTKAGRKKIPLNIPS+
Sbjct: 62  APGDYNDEVPVADTVDPGAQQEPSSVPTELKPARKKGQQIRRNITTKAGRKKIPLNIPSV 121

Query: 68  QIDGISFHLEENVQR 83
            IDGISFHLEEN+ R
Sbjct: 122 PIDGISFHLEENIHR 136

[Close]

BLAST of MELO3C034924.2 vs. NCBI nr
Match: XP_008464590.1 (PREDICTED: uncharacterized protein LOC103502436 [Cucumis melo])

HSP 1 Score: 124.8 bits (312), Expect = 1.4e-25
Identity = 63/74 (85.14%), Postives = 66/74 (89.19%), Query Frame = 0


Query: 9   PGDHNVEVPVADTVDPSAQQETPLVPTEPKPSRKKGQQLRRNITTKAGRKKIPLNIPSIQ 68
           P DHN EVPVADT+DPSAQQ+TP VPTE K SRKKGQQLRRNITTKAGRKKIPLNIPS+ 
Sbjct: 70  PSDHNDEVPVADTIDPSAQQQTPSVPTERKSSRKKGQQLRRNITTKAGRKKIPLNIPSVP 129

Query: 69  IDGISFHLEENVQR 83
           I GISFH EENVQR
Sbjct: 130 IYGISFHHEENVQR 143

[Close]

BLAST of MELO3C034924.2 vs. NCBI nr
Match: XP_008454855.1 (PREDICTED: uncharacterized protein LOC103495162 [Cucumis melo])

HSP 1 Score: 120.2 bits (300), Expect = 3.4e-24
Identity = 61/71 (85.92%), Postives = 64/71 (90.14%), Query Frame = 0


Query: 11  DHNVEVPVADTVDPSAQQETPLVPTEPKPSRKKGQQLRRNITTKAGRKKIPLNIPSIQID 70
           DHN EV VAD+VD SAQQETPLV TEPKPSRKKGQQL+RNITTK GRKKIPLNIPS+ ID
Sbjct: 146 DHNEEVHVADSVDSSAQQETPLVSTEPKPSRKKGQQLQRNITTKVGRKKIPLNIPSVPID 205

Query: 71  GISFHLEENVQ 82
           GI FHLEENVQ
Sbjct: 206 GIFFHLEENVQ 216

[Close]

BLAST of MELO3C034924.2 vs. NCBI nr
Match: XP_008463460.1 (PREDICTED: uncharacterized protein LOC103501627 [Cucumis melo])

HSP 1 Score: 92.8 bits (229), Expect = 5.7e-16
Identity = 46/55 (83.64%), Postives = 49/55 (89.09%), Query Frame = 0


Query: 28  QETPLVPTEPKPSRKKGQQLRRNITTKAGRKKIPLNIPSIQIDGISFHLEENVQR 83
           QET  VPTEPKPSRKK QQ RRNITTK GRKK+PLNIPS+ IDGISFHLEE+VQR
Sbjct: 132 QETQSVPTEPKPSRKKVQQNRRNITTKTGRKKVPLNIPSVPIDGISFHLEESVQR 186

[Close]

BLAST of MELO3C034924.2 vs. TrEMBL
Match: tr|A0A1S3AV82|A0A1S3AV82_CUCME (uncharacterized protein LOC103483026 OS=Cucumis melo OX=3656 GN=LOC103483026 PE=4 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 1.1e-28
Identity = 70/76 (92.11%), Postives = 71/76 (93.42%), Query Frame = 0


Query: 8   APGDHNVEVPVADTVDPSAQQETPLVPTEPKPSRKKGQQLRRNITTKAGRKKIPLNIPSI 67
           APGDHN EVPVADTVDPSAQQET  VPTEPKPSRKKGQQLRRNITTKAGRKKIPLNIPS+
Sbjct: 135 APGDHNDEVPVADTVDPSAQQETLSVPTEPKPSRKKGQQLRRNITTKAGRKKIPLNIPSV 194

Query: 68  QI-DGISFHLEENVQR 83
            I DGISFHLEENVQR
Sbjct: 195 PIVDGISFHLEENVQR 210

[Close]

BLAST of MELO3C034924.2 vs. TrEMBL
Match: tr|A0A1S3C0F4|A0A1S3C0F4_CUCME (uncharacterized protein LOC103495053 OS=Cucumis melo OX=3656 GN=LOC103495053 PE=4 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 5.3e-26
Identity = 62/75 (82.67%), Postives = 67/75 (89.33%), Query Frame = 0


Query: 8   APGDHNVEVPVADTVDPSAQQETPLVPTEPKPSRKKGQQLRRNITTKAGRKKIPLNIPSI 67
           APGD+N EVPVADTVDP AQQE   VPTE KP+RKKGQQ+RRNITTKAGRKKIPLNIPS+
Sbjct: 62  APGDYNDEVPVADTVDPGAQQEPSSVPTELKPARKKGQQIRRNITTKAGRKKIPLNIPSV 121

Query: 68  QIDGISFHLEENVQR 83
            IDGISFHLEEN+ R
Sbjct: 122 PIDGISFHLEENIHR 136

[Close]

BLAST of MELO3C034924.2 vs. TrEMBL
Match: tr|A0A1S3CND8|A0A1S3CND8_CUCME (uncharacterized protein LOC103502436 OS=Cucumis melo OX=3656 GN=LOC103502436 PE=4 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 9.0e-26
Identity = 63/74 (85.14%), Postives = 66/74 (89.19%), Query Frame = 0


Query: 9   PGDHNVEVPVADTVDPSAQQETPLVPTEPKPSRKKGQQLRRNITTKAGRKKIPLNIPSIQ 68
           P DHN EVPVADT+DPSAQQ+TP VPTE K SRKKGQQLRRNITTKAGRKKIPLNIPS+ 
Sbjct: 70  PSDHNDEVPVADTIDPSAQQQTPSVPTERKSSRKKGQQLRRNITTKAGRKKIPLNIPSVP 129

Query: 69  IDGISFHLEENVQR 83
           I GISFH EENVQR
Sbjct: 130 IYGISFHHEENVQR 143

[Close]

BLAST of MELO3C034924.2 vs. TrEMBL
Match: tr|A0A1S3BZ31|A0A1S3BZ31_CUCME (uncharacterized protein LOC103495162 OS=Cucumis melo OX=3656 GN=LOC103495162 PE=4 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 2.2e-24
Identity = 61/71 (85.92%), Postives = 64/71 (90.14%), Query Frame = 0


Query: 11  DHNVEVPVADTVDPSAQQETPLVPTEPKPSRKKGQQLRRNITTKAGRKKIPLNIPSIQID 70
           DHN EV VAD+VD SAQQETPLV TEPKPSRKKGQQL+RNITTK GRKKIPLNIPS+ ID
Sbjct: 146 DHNEEVHVADSVDSSAQQETPLVSTEPKPSRKKGQQLQRNITTKVGRKKIPLNIPSVPID 205

Query: 71  GISFHLEENVQ 82
           GI FHLEENVQ
Sbjct: 206 GIFFHLEENVQ 216

[Close]

BLAST of MELO3C034924.2 vs. TrEMBL
Match: tr|A0A1S3CJR8|A0A1S3CJR8_CUCME (uncharacterized protein LOC103501627 OS=Cucumis melo OX=3656 GN=LOC103501627 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 3.8e-16
Identity = 46/55 (83.64%), Postives = 49/55 (89.09%), Query Frame = 0


Query: 28  QETPLVPTEPKPSRKKGQQLRRNITTKAGRKKIPLNIPSIQIDGISFHLEENVQR 83
           QET  VPTEPKPSRKK QQ RRNITTK GRKK+PLNIPS+ IDGISFHLEE+VQR
Sbjct: 132 QETQSVPTEPKPSRKKVQQNRRNITTKTGRKKVPLNIPSVPIDGISFHLEESVQR 186

The following BLAST results are available for this feature:

BLAST of MELO3C034924.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008437685.1	1.7e-28	92.11	PREDICTED: uncharacterized protein LOC103483026 [Cucumis melo]	[more]
XP_008454699.1	8.0e-26	82.67	PREDICTED: uncharacterized protein LOC103495053 [Cucumis melo]	[more]
XP_008464590.1	1.4e-25	85.14	PREDICTED: uncharacterized protein LOC103502436 [Cucumis melo]	[more]
XP_008454855.1	3.4e-24	85.92	PREDICTED: uncharacterized protein LOC103495162 [Cucumis melo]	[more]
XP_008463460.1	5.7e-16	83.64	PREDICTED: uncharacterized protein LOC103501627 [Cucumis melo]	[more]

BLAST of MELO3C034924.2 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of MELO3C034924.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C034924.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3AV82\|A0A1S3AV82_CUCME	1.1e-28	92.11	uncharacterized protein LOC103483026 OS=Cucumis melo OX=3656 GN=LOC103483026 PE=...	[more]
tr\|A0A1S3C0F4\|A0A1S3C0F4_CUCME	5.3e-26	82.67	uncharacterized protein LOC103495053 OS=Cucumis melo OX=3656 GN=LOC103495053 PE=...	[more]
tr\|A0A1S3CND8\|A0A1S3CND8_CUCME	9.0e-26	85.14	uncharacterized protein LOC103502436 OS=Cucumis melo OX=3656 GN=LOC103502436 PE=...	[more]
tr\|A0A1S3BZ31\|A0A1S3BZ31_CUCME	2.2e-24	85.92	uncharacterized protein LOC103495162 OS=Cucumis melo OX=3656 GN=LOC103495162 PE=...	[more]
tr\|A0A1S3CJR8\|A0A1S3CJR8_CUCME	3.8e-16	83.64	uncharacterized protein LOC103501627 OS=Cucumis melo OX=3656 GN=LOC103501627 PE=...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C034924.2.1	MELO3C034924.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 20..56

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C034924.2	Cucumber (Gy14) v2	cgybmedB080
MELO3C034924.2	Cucumber (Gy14) v2	cgybmedB452
MELO3C034924.2	Cucumber (Gy14) v1	cgymedB071
MELO3C034924.2	Cucumber (Gy14) v1	cgymedB243
MELO3C034924.2	Cucurbita maxima (Rimu)	cmamedB095
MELO3C034924.2	Cucurbita maxima (Rimu)	cmamedB579
MELO3C034924.2	Cucurbita maxima (Rimu)	cmamedB612
MELO3C034924.2	Cucurbita moschata (Rifu)	cmomedB087
MELO3C034924.2	Cucurbita moschata (Rifu)	cmomedB558
MELO3C034924.2	Cucurbita moschata (Rifu)	cmomedB601
MELO3C034924.2	Cucurbita pepo (Zucchini)	cpemedB302
MELO3C034924.2	Cucurbita pepo (Zucchini)	cpemedB710
MELO3C034924.2	Cucurbita pepo (Zucchini)	cpemedB797
MELO3C034924.2	Wild cucumber (PI 183967)	cpimedB088
MELO3C034924.2	Wild cucumber (PI 183967)	cpimedB507
MELO3C034924.2	Cucumber (Chinese Long) v2	cumedB088
MELO3C034924.2	Cucumber (Chinese Long) v2	cumedB497
MELO3C034924.2	Melon (DHL92) v3.6.1	medmedB038
MELO3C034924.2	Bottle gourd (USVL1VR-Ls)	lsimedB054
MELO3C034924.2	Bottle gourd (USVL1VR-Ls)	lsimedB095
MELO3C034924.2	Watermelon (Charleston Gray)	medwcgB088
MELO3C034924.2	Watermelon (Charleston Gray)	medwcgB100
MELO3C034924.2	Watermelon (97103) v1	medwmB119
MELO3C034924.2	Watermelon (97103) v1	medwmB127
MELO3C034924.2	Silver-seed gourd	carmedB0030
MELO3C034924.2	Silver-seed gourd	carmedB0348
MELO3C034924.2	Cucumber (Chinese Long) v3	cucmedB096
MELO3C034924.2	Cucumber (Chinese Long) v3	cucmedB522
MELO3C034924.2	Watermelon (97103) v2	medwmbB087
MELO3C034924.2	Watermelon (97103) v2	medwmbB100
MELO3C034924.2	Wax gourd	medwgoB110
MELO3C034924.2	Wax gourd	medwgoB128