MELO3C032701.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C032701.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	LOW QUALITY PROTEIN: gamma-aminobutyrate transaminase POP2, mitochondrial-like
Location	chr07 : 13358384 .. 13359195 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CACATATTTATATCTAGTTTATATATTTTGATTCTAGCTATGTGTTCGTATTTGTTTATTAAATGTTTGTTTTCTATGTCTACAGCCATTATGTTATATCGATGATCAAATTTTATAGAGACGGACGATATGTTCCTCCAGTTTGAGGACGATTTAGATAACATCGCGGGAGGGTCGTCATCTGTGTGCGACAATACGGGTGAGTCTAAGAATTTTCTTCATTTTAACTTACAATTATTTCGTGTTCTTTTTTCTAACTTTATATGTTATTATCGATTAATTAAGCAGGGTCTTCTTCTCAACAAGCGACTCCGACTCCTAGGAGACGTGCGCAGTTTTGACTCTTGGAGTTAGAACGCCACGTTGCAATAAATGGGTGCATTCCGATGACTATCGCCCTTGGAGCAAAGAAGCCTATTTCTTCACACGTCGTTTGCTTCAGCCAGGCGATAGACGTGTGCGTGCGAAAGACATTTCTCGTCCGCTATCTTAAGTGGGCAGACGTTGGGAGAGAATACATTGAGGTCGTCAAGGGCGACCTCCAGGTAATTAAATGCACTACACATTTATATATAATTTCATCTGAAACATATCTAACTTTAACCAATCTAATGTGTTATGTTTGTAATGTGTAGCGATTGTTTGTGATTGATTTCAATGATCAAGCAATGAACAGGTTTGTTGAGCATCAGATGCTCACGACCTTTAAAGAGTTCCGGTTCGACTGTCACAGACATTTCAAAAAATACAGCGACCCGGAGGAGGCTCGTGCCAACTCACCAAACGCATTGGTTGGACGTGATGAGGATTGA

mRNA sequence

CACATATTTATATCTAGTTTATATATTTTGATTCTAGCTATGTGTTCGTATTTGTTTATTAAATGTTTGTTTTCTATGTCTACAGCCATTATGTTATATCGATGATCAAATTTTATAGAGACGGACGATATGTTCCTCCAGTTTGAGGACGATTTAGATAACATCGCGGGAGGGTCGTCATCTGTGTGCGACAATACGGGGTCTTCTTCTCAACAAGCGACTCCGACTCCTAGGAGACGTGCGCAGTTTTGACTCTTGGAGTTAGAACGCCACGTTGCAATAAATGGGTGCATTCCGATGACTATCGCCCTTGGAGCAAAGAAGCCTATTTCTTCACACGTCGTTTGCTTCAGCCAGGCGATAGACGTGTGCGTGCGAAAGACATTTCTCGTCCGCTATCTTAAGTGGGCAGACGTTGGGAGAGAATACATTGAGGTCGTCAAGGGCGACCTCCAGCGATTGTTTGTGATTGATTTCAATGATCAAGCAATGAACAGGTTTGTTGAGCATCAGATGCTCACGACCTTTAAAGAGTTCCGGTTCGACTGTCACAGACATTTCAAAAAATACAGCGACCCGGAGGAGGCTCGTGCCAACTCACCAAACGCATTGGTTGGACGTGATGAGGATTGA

Coding sequence (CDS)

ATGACTATCGCCCTTGGAGCAAAGAAGCCTATTTCTTCACACGTCGTTTGCTTCAGCCAGGCGATAGACGTGTGCGTGCGAAAGACATTTCTCGTCCGCTATCTTAAGTGGGCAGACGTTGGGAGAGAATACATTGAGGTCGTCAAGGGCGACCTCCAGCGATTGTTTGTGATTGATTTCAATGATCAAGCAATGAACAGGTTTGTTGAGCATCAGATGCTCACGACCTTTAAAGAGTTCCGGTTCGACTGTCACAGACATTTCAAAAAATACAGCGACCCGGAGGAGGCTCGTGCCAACTCACCAAACGCATTGGTTGGACGTGATGAGGATTGA

Protein sequence

MTIALGAKKPISSHVVCFSQAIDVCVRKTFLVRYLKWADVGREYIEVVKGDLQRLFVIDFNDQAMNRFVEHQMLTTFKEFRFDCHRHFKKYSDPEEARANSPNALVGRDED

Homology

[Close]

BLAST of MELO3C032701.2 vs. NCBI nr
Match: ADN34071.1 (CACTA en-spm transposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 194.5 bits (493), Expect = 1.9e-46
Identity = 95/111 (85.59%), Postives = 100/111 (90.09%), Query Frame = 0


Query: 1   MTIALGAKKPISSHVVCFSQAIDVCVRKTFLVRYLKWADVGREYIEVVKGDLQRLFVIDF 60
           MTIA GA+KPIS + V FSQAI VCVRKTF VR LKW DVGREYIEVVKGDLQR FV+DF
Sbjct: 62  MTIAPGAEKPISPYAVHFSQAIGVCVRKTFPVRCLKWVDVGREYIEVVKGDLQRFFVLDF 121

Query: 61  NDQAMNRFVEHQMLTTFKEFRFDCHRHFKKYSDPEEARANSPNALVGRDED 112
           NDQAMNRFVEHQM+TTFKEF+ DCHRHFKKYSDPEEARAN PNALVGRDED
Sbjct: 122 NDQAMNRFVEHQMVTTFKEFQVDCHRHFKKYSDPEEARANPPNALVGRDED 172

[Close]

BLAST of MELO3C032701.2 vs. NCBI nr
Match: XP_016901035.1 (PREDICTED: uncharacterized protein LOC107991153 [Cucumis melo] >XP_016901036.1 PREDICTED: uncharacterized protein LOC107991153 [Cucumis melo])

HSP 1 Score: 157.5 bits (397), Expect = 2.6e-35
Identity = 80/111 (72.07%), Postives = 88/111 (79.28%), Query Frame = 0


Query: 1   MTIALGAKKPISSHVVCFSQAIDVCVRKTFLVRYLKWADVGREYIEVVKGDLQRLFVIDF 60
           M IA GA+ PI  + + FSQAI VCV+KTF V YLKWAD+ REYIEVVKG+LQR FV+DF
Sbjct: 71  MMIAPGAEMPIFPYAIRFSQAIGVCVQKTFFVCYLKWADIDREYIEVVKGNLQRFFVLDF 130

Query: 61  NDQAMNRFVEHQMLTTFKEFRFDCHRHFKKYSDPEEARANSPNALVGRDED 112
           NDQA+NRFVEHQMLTTFKEF  DCHRHFK      EARAN PN LVGR ED
Sbjct: 131 NDQAINRFVEHQMLTTFKEFWGDCHRHFK------EARANPPNVLVGRHED 175

[Close]

BLAST of MELO3C032701.2 vs. NCBI nr
Match: XP_016901155.1 (PREDICTED: LOW QUALITY PROTEIN: gamma-aminobutyrate transaminase POP2, mitochondrial-like [Cucumis melo])

HSP 1 Score: 107.8 bits (268), Expect = 2.3e-20
Identity = 54/71 (76.06%), Postives = 59/71 (83.10%), Query Frame = 0


Query: 41  GREYIEVVKGDLQRLFVIDFNDQAMNRFVEHQMLTTFKEFRFDCHRHFKKYSDPEEARAN 100
           GREYIEVVK DLQ  FV+DF+DQAMN  VE+QM  TFKEF  DCH+ FKKYSDPEEARAN
Sbjct: 116 GREYIEVVKADLQ-FFVLDFSDQAMNTSVEYQMSNTFKEFWGDCHKQFKKYSDPEEARAN 175

Query: 101 SPNALVGRDED 112
            PN LVGR+ED
Sbjct: 176 PPNLLVGRNED 185

[Close]

BLAST of MELO3C032701.2 vs. NCBI nr
Match: XP_011648549.1 (PREDICTED: (R)-mandelonitrile lyase 1-like [Cucumis sativus])

HSP 1 Score: 74.3 bits (181), Expect = 2.9e-10
Identity = 39/73 (53.42%), Postives = 48/73 (65.75%), Query Frame = 0


Query: 1   MTIALGAKKPISSHVVCFSQAIDVCVRKTFLVRYLKWADVGREYIEVVKGDLQRLFVIDF 60
           ++I L   KPIS H + FS  IDV  R TF ++ LKW DV +EYIEVVK    + FV+DF
Sbjct: 751 ISIPLEGDKPISPHPIRFSCTIDVLTRDTFPIQILKWVDVPQEYIEVVK----QWFVLDF 810

Query: 61  NDQAMNRFVEHQM 74
            D  + RFVEHQM
Sbjct: 811 KDLTLTRFVEHQM 819

[Close]

BLAST of MELO3C032701.2 vs. NCBI nr
Match: KDO39328.1 (hypothetical protein CISIN_1g041788mg, partial [Citrus sinensis])

HSP 1 Score: 58.9 bits (141), Expect = 1.2e-05
Identity = 30/93 (32.26%), Postives = 48/93 (51.61%), Query Frame = 0


Query: 9   KPISSHVVCFSQAIDVCVRKTFLVRYLKWADVGREYIEVVKGDLQRLFVIDFNDQAMNRF 68
           +PI +H   F+  I V VR    ++Y  W  +  E  +VV   L   F  D +   +  +
Sbjct: 23  RPICNHASRFANEIGVAVRLFSPIQYESWCAIPDEEKKVVFEQLLTKFEFDMSMPHILNY 82

Query: 69  VEHQMLTTFKEFRFDCHRHFKKYSDPEEARANS 102
           V   M   + + R++CH+HFKKY+ P EAR ++
Sbjct: 83  VNSSMAKRYSDHRYNCHKHFKKYATPSEARQHA 115

[Close]

BLAST of MELO3C032701.2 vs. TrEMBL
Match: tr|E5GC72|E5GC72_CUCME (CACTA en-spm transposon protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 194.5 bits (493), Expect = 1.3e-46
Identity = 95/111 (85.59%), Postives = 100/111 (90.09%), Query Frame = 0


Query: 1   MTIALGAKKPISSHVVCFSQAIDVCVRKTFLVRYLKWADVGREYIEVVKGDLQRLFVIDF 60
           MTIA GA+KPIS + V FSQAI VCVRKTF VR LKW DVGREYIEVVKGDLQR FV+DF
Sbjct: 62  MTIAPGAEKPISPYAVHFSQAIGVCVRKTFPVRCLKWVDVGREYIEVVKGDLQRFFVLDF 121

Query: 61  NDQAMNRFVEHQMLTTFKEFRFDCHRHFKKYSDPEEARANSPNALVGRDED 112
           NDQAMNRFVEHQM+TTFKEF+ DCHRHFKKYSDPEEARAN PNALVGRDED
Sbjct: 122 NDQAMNRFVEHQMVTTFKEFQVDCHRHFKKYSDPEEARANPPNALVGRDED 172

[Close]

BLAST of MELO3C032701.2 vs. TrEMBL
Match: tr|A0A1S4DZ93|A0A1S4DZ93_CUCME (uncharacterized protein LOC107991153 OS=Cucumis melo OX=3656 GN=LOC107991153 PE=4 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 1.7e-35
Identity = 80/111 (72.07%), Postives = 88/111 (79.28%), Query Frame = 0


Query: 1   MTIALGAKKPISSHVVCFSQAIDVCVRKTFLVRYLKWADVGREYIEVVKGDLQRLFVIDF 60
           M IA GA+ PI  + + FSQAI VCV+KTF V YLKWAD+ REYIEVVKG+LQR FV+DF
Sbjct: 71  MMIAPGAEMPIFPYAIRFSQAIGVCVQKTFFVCYLKWADIDREYIEVVKGNLQRFFVLDF 130

Query: 61  NDQAMNRFVEHQMLTTFKEFRFDCHRHFKKYSDPEEARANSPNALVGRDED 112
           NDQA+NRFVEHQMLTTFKEF  DCHRHFK      EARAN PN LVGR ED
Sbjct: 131 NDQAINRFVEHQMLTTFKEFWGDCHRHFK------EARANPPNVLVGRHED 175

[Close]

BLAST of MELO3C032701.2 vs. TrEMBL
Match: tr|A0A1S4DZJ7|A0A1S4DZJ7_CUCME (LOW QUALITY PROTEIN: gamma-aminobutyrate transaminase POP2, mitochondrial-like OS=Cucumis melo OX=3656 GN=LOC103493054 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 1.5e-20
Identity = 54/71 (76.06%), Postives = 59/71 (83.10%), Query Frame = 0


Query: 41  GREYIEVVKGDLQRLFVIDFNDQAMNRFVEHQMLTTFKEFRFDCHRHFKKYSDPEEARAN 100
           GREYIEVVK DLQ  FV+DF+DQAMN  VE+QM  TFKEF  DCH+ FKKYSDPEEARAN
Sbjct: 116 GREYIEVVKADLQ-FFVLDFSDQAMNTSVEYQMSNTFKEFWGDCHKQFKKYSDPEEARAN 175

Query: 101 SPNALVGRDED 112
            PN LVGR+ED
Sbjct: 176 PPNLLVGRNED 185

[Close]

BLAST of MELO3C032701.2 vs. TrEMBL
Match: tr|A0A067D926|A0A067D926_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis OX=2711 GN=CISIN_1g041788mg PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 8.2e-06
Identity = 30/93 (32.26%), Postives = 48/93 (51.61%), Query Frame = 0


Query: 9   KPISSHVVCFSQAIDVCVRKTFLVRYLKWADVGREYIEVVKGDLQRLFVIDFNDQAMNRF 68
           +PI +H   F+  I V VR    ++Y  W  +  E  +VV   L   F  D +   +  +
Sbjct: 23  RPICNHASRFANEIGVAVRLFSPIQYESWCAIPDEEKKVVFEQLLTKFEFDMSMPHILNY 82

Query: 69  VEHQMLTTFKEFRFDCHRHFKKYSDPEEARANS 102
           V   M   + + R++CH+HFKKY+ P EAR ++
Sbjct: 83  VNSSMAKRYSDHRYNCHKHFKKYATPSEARQHA 115

[Close]

BLAST of MELO3C032701.2 vs. TrEMBL
Match: tr|A0A1S4E4L2|A0A1S4E4L2_CUCME (uncharacterized protein LOC107992057 OS=Cucumis melo OX=3656 GN=LOC107992057 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 2.0e-04
Identity = 29/54 (53.70%), Postives = 34/54 (62.96%), Query Frame = 0


Query: 3   IALGAKKPISSHVVCFSQAIDVCVRKTFLVRYLKWADVGREYIEVVKGDLQRLF 57
           I  G  K IS +VV FS  I V    TFLVR+LKWAD+  EYIE++K  LQ  F
Sbjct: 323 IVPGQDKRISPYVVHFSNTIGVLTGDTFLVRFLKWADMITEYIELIKSSLQISF 376

The following BLAST results are available for this feature:

BLAST of MELO3C032701.2 vs. NCBI nr


Match Name	E-value	Identity	Description
ADN34071.1	1.9e-46	85.59	CACTA en-spm transposon protein [Cucumis melo subsp. melo]	[more]
XP_016901035.1	2.6e-35	72.07	PREDICTED: uncharacterized protein LOC107991153 [Cucumis melo] >XP_016901036.1 P...	[more]
XP_016901155.1	2.3e-20	76.06	PREDICTED: LOW QUALITY PROTEIN: gamma-aminobutyrate transaminase POP2, mitochond...	[more]
XP_011648549.1	2.9e-10	53.42	PREDICTED: (R)-mandelonitrile lyase 1-like [Cucumis sativus]	[more]
KDO39328.1	1.2e-05	32.26	hypothetical protein CISIN_1g041788mg, partial [Citrus sinensis]	[more]

BLAST of MELO3C032701.2 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of MELO3C032701.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C032701.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|E5GC72\|E5GC72_CUCME	1.3e-46	85.59	CACTA en-spm transposon protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1	[more]
tr\|A0A1S4DZ93\|A0A1S4DZ93_CUCME	1.7e-35	72.07	uncharacterized protein LOC107991153 OS=Cucumis melo OX=3656 GN=LOC107991153 PE=...	[more]
tr\|A0A1S4DZJ7\|A0A1S4DZJ7_CUCME	1.5e-20	76.06	LOW QUALITY PROTEIN: gamma-aminobutyrate transaminase POP2, mitochondrial-like O...	[more]
tr\|A0A067D926\|A0A067D926_CITSI	8.2e-06	32.26	Uncharacterized protein (Fragment) OS=Citrus sinensis OX=2711 GN=CISIN_1g041788m...	[more]
tr\|A0A1S4E4L2\|A0A1S4E4L2_CUCME	2.0e-04	53.70	uncharacterized protein LOC107992057 OS=Cucumis melo OX=3656 GN=LOC107992057 PE=...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003824	catalytic activity
molecular_function	GO:0030170	pyridoxal phosphate binding
molecular_function	GO:0008483	transaminase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C032701.2.1	MELO3C032701.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 92..111

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C032701.2	Cucumber (Gy14) v2	cgybmedB067
MELO3C032701.2	Cucumber (Gy14) v2	cgybmedB269
MELO3C032701.2	Cucumber (Gy14) v1	cgymedB162
MELO3C032701.2	Cucumber (Gy14) v1	cgymedB302
MELO3C032701.2	Cucurbita maxima (Rimu)	cmamedB232
MELO3C032701.2	Cucurbita maxima (Rimu)	cmamedB280
MELO3C032701.2	Cucurbita maxima (Rimu)	cmamedB502
MELO3C032701.2	Cucurbita moschata (Rifu)	cmomedB266
MELO3C032701.2	Cucurbita moschata (Rifu)	cmomedB490
MELO3C032701.2	Cucurbita pepo (Zucchini)	cpemedB641
MELO3C032701.2	Cucurbita pepo (Zucchini)	cpemedB700
MELO3C032701.2	Wild cucumber (PI 183967)	cpimedB071
MELO3C032701.2	Wild cucumber (PI 183967)	cpimedB304
MELO3C032701.2	Cucumber (Chinese Long) v2	cumedB300
MELO3C032701.2	Bottle gourd (USVL1VR-Ls)	lsimedB236
MELO3C032701.2	Bottle gourd (USVL1VR-Ls)	lsimedB466
MELO3C032701.2	Watermelon (Charleston Gray)	medwcgB483
MELO3C032701.2	Watermelon (97103) v1	medwmB502
MELO3C032701.2	Silver-seed gourd	carmedB0712
MELO3C032701.2	Silver-seed gourd	carmedB0825
MELO3C032701.2	Cucumber (Chinese Long) v3	cucmedB080
MELO3C032701.2	Cucumber (Chinese Long) v3	cucmedB310
MELO3C032701.2	Watermelon (97103) v2	medwmbB486
MELO3C032701.2	Wax gourd	medwgoB586