MELO3C031696.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C031696.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	GATA zinc finger domain-containing protein 10-like isoform X2
Location	chr06 : 11969698 .. 11972164 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCATGCCATTTTGCCATTGTTCTGTCAGCCACACACTTATTAACTTTCAACAAAACTTACACTTATCTTTGTAGACCGATGAAAATATATAGATGGTAGGCTTTTCAACTGAAAATAAGTTTCAGCCCATTCCTCCTCCATTGATGGCGAGCTTGGGAGGCTTCTAATTTCTAATTTCTTTTAAATCTTCTTCCTTCATACTACGACAACACCCAAAAAAACATCTTCCTTTTAAATTTCTTCCTTTAGTTTCTCTTCCTTTTAAGCCTTCTTCCTTCACCGACTTCTTCCTTCACGGTAGTTCTCTCGTAAAATCTCAATCTCCCTAAATTTCTAATTTCTTTTTTTTTAATTTCTAATTTCTCTTTGTTCGATTTATATTTCCACATATTTACCTAAATATCTTAGTATATATTTTTTCTTTTCTTTTGTTTAATCTATATTTCCAATATTTTTACGAAAATATCTTAAAATATTTTTCATTAAATTTTTTTTTCGTTTTTCATTTTCCATAAAAATTTTAAAAATATTTTTCATAAAAATCTTAAAAGGATTCACCTATATCTTCGCATTATATTATTTATTTTTGTTAAATTTATTTTTTAAATTATTTACATAAATTTTAACTAGATTTTCGTTTTATCTTTACAGGTCAGAGTCATGGTGATTGGTTGTATCTTTGCCAAGTATTACTCGGTGTGAGCCCACTTGCTGAACAAATCAGGGGTTTGAGGTTGAGTTTAACATGGCTGGGGGTAGAGTTTTCTGGATTGGCTGACGATGCCGATGAGCAAACTATCACAAGATATGCACGAGCATATATTTTACAGTTGATGGGTGAGAGTATATTCGCAGATAAATCAACTTGTTATGTGCACCTAATATTCTTACCATTCTTATCTAATATGCACCACACGTCGCAATATTCGTGGAGTGGAGCCTGTTTAGCATGGTTGTATAGATAATTATGCAAGACATCCAAACAAGGTATTCGTGAAATTGTTGGACCACTAATATTGTTACAATTATGGGCTTGGAAACGATTCCCAATAGTTGCTCCACAACTCCTGCATGTTAATGCTCATCAATTACACGGTCGAGCTTATGGTTCAAGGTATGCTATTTCAATTTAATTTTGATTAACAATAACTTTTTATACATAGTACATTTAAAATCTAAAATATTAGTTGAACAATACAGATGAAGAGATCAATTTTGTGTGACCAAGTTGGCTACACATGTAGTCTCTAAGTATAGATACATGTTTGATCTTCTTCAACCTGATCAAGTACGTCTTGCTAAACTTGAAGTTCAAGTTCCATATTATTTGTTTCATAGAATATGTTGTGTTTCAAATTATCTGGGAGCCATACAAAGCTGTCATAGATAGTTTGCCACATTTATGTACGAACGGTTACGACATATGGCGGACGATTAGTCCTCTTATATGTTTCTACATTGGTGAGTAGCATCATCCTGACAAAACACTTGGACAGTTTGATATTCAACAAGATGTTCCACGTGGTTGTAATACTAAACCACTGTTGCACGACATTGACCTGAGGACTGCTGATTGGTTAGATAGAGTTGCTCATTTAGTGATGCGATGGCTAAATCGCAGAAGGTTAAGCTACAGGACCTCCAATTGGGCAATTTGATACGGATGTAACTCAAGAATACATCCATTGGTATAAAAACATTACCAGGCTCTATATCACCCAACCGAGAGCTGCTGTAGGTCATCTGGAACACATTTAAATATTGTATAATTATTTTTAGTGCAAATTTATTTTCAATGATTTCTAATTCATTTTAATATTTCACAGAGATTAAACAAAAGTAGACTTCGAGTTGTTGCAGATGATCCAAGGTCCTAAATATATGCAATGATAACGAGCAGTACATCGATAGCATACACTATATGTATGATGTACCTATTGTACCTGCTCCAGTTCAAAGGAGACGTACTCTAGTGCAAAAGCTTGATGAATTGGAAGAAGTTGACCAAAACGTGGAAGAAGTGCCTCCTATCACACAAACACAGAGCGAGACTGGTTACGTTAGTCCAATGATGATGATGTCGGCGTTTGGAACGAGATATTATTATCCAGGAGTTGGTCAATCGTCAGGCTTCGGAACATGATATTACAATTTAGAGGCAAGTCCATCATCATCAAACTTTGGACAAGAATACTATGATTTAGGGACCAATCCATCATCTTCATACATGCATGGTCATGGATGCAGTCGTGGAGAACATAACGAATATTTATACTACGAAGCGCCCGCAGTGGTACCCGATGAACCAAATGAGCAACAACAACAAGAGAATCAGAAGGAACTACAACAACAAAGAGTGCAGAGTCGACGACGACAACCAACTAGAAATCGTCGACGTCCAAGTTGTGGAACACATTGATTTTTTTCATTAAATGAAAATTGTTAAATTATCGTATTAGACAT

mRNA sequence

ATGGCCATGCCATTTTGCCATTGTTCTGTCAGCCACACACTTATTAACTTTCAACAAAACTTACACTTATCTTTGTAGACCGATGAAAATATATAGATGGTAGGCTTTTCAACTGAAAATAAGTTTCAGCCCATTCCTCCTCCATTGATGGCGAGCTTGGGAGGCTTCTAATTTCTAATTTCTTTTAAATCTTCTTCCTTCATACTACGACAACACCCAAAAAAACATCTTCCTTTTAAATTTCTTCCTTTAGTTTCTCTTCCTTTTAAGCCTTCTTCCTTCACCGACTTCTTCCTTCACGGTCAGAGTCATGGTGATTGGTTGTATCTTTGCCAAGTATTACTCGGTGTGAGCCCACTTGCTGAACAAATCAGGGGTTTGAGGTTGAGTTTAACATGGCTGGGGGTAGAGTTTTCTGGATTGGCTGACGATGCCGATGAGCAAACTATCACAAGATATGCACGAGCATATATTTTACAGTTGATGGGTGAGAGTATATTCGCAGATAAATCAACTTGTTATGTGCACCTAATATTCTTACCATTCTTATCTAATATGCACCACACGTCGCAATATTCGTGGAGTGGAGCCTGTTTAGCATGGTTGTATAGATAATTATGCAAGACATCCAAACAAGGTATTCGTGAAATTGTTGGACCACTAATATTGTTACAATTATGGGCTTGGAAACGATTCCCAATAGTTGCTCCACAACTCCTGCATGTTAATGCTCATCAATTACACGGTCGAGCTTATGGTTCAAGATGAAGAGATCAATTTTGTGTGACCAAGTTGGCTACACATGTAGTCTCTAAGTATAGATACATGTTTGATCTTCTTCAACCTGATCAAGTACGTCTTGCTAAACTTGAAGTTCAAGTTCCATATTATTTGTTTCATAGAATATGTTGTGTTTCAAATTATCTGGGAGCCATACAAAGCTGTCATAGATAGTTTGCCACATTTATGTACGAACGGTTACgACATATGGCGGACGATTAGTCCTCTTATATGTTTCTACATTGGTGAGTAGCATCATCCTGACAAAACACTTGGACAGTTTGATATTCAACAAGATGTTCCACGTGGTTGTAATACTAAACCACTGTTGCACGACATTGACCTGAGGACTGCTGATTGGTTAGATAGAGTTGCTCATTTAGTGATGCGATGGCTAAATCGCAGAAGGTTAAGCTACAGGACCTCCAATTGGGCAATTTGATACGGATGTAACTCAAGAATACATCCATTGGTATAAAAACATTACCAGGCTCTATATCACCCAACCGAGAGCTGCTAGATTAAACAAAAGTAGACTTCGAGTTGTTGCAGATGATCCAAGGTCCTAAATATATGCAATGATAACGAGCAGTACATCGATAGCATACACTATATGTATGATGTACCTATTGTACCTGCTCCAGTTCAAAGGAGACGTACTCTAGTGCAAAAGCTTGATGAATTGGAAGAAGTTGACCAAAACGTGGAAGAAGTGCCTCCTATCACACAAACACAGAGCGAGACTGGTTACGTTAGTCCAATGATGATGATGTCGGCGTTTGGAACGAGATATTATTATCCAGGAGTTGGTCAATCGTCAGGCTTCGGAACATGATATTACAATTTAGAGGCAAGTCCATCATCATCAAACTTTGGACAAGAATACTATGATTTAGGGACCAATCCATCATCTTCATACATGCATGGTCATGGATGCAGTCGTGGAGAACATAACGAATATTTATACTACGAAGCGCCCGCAGTGGTACCCGATGAACCAAATGAGCAACAACAACAAGAGAATCAGAAGGAACTACAACAACAAAGAGTGCAGAGTCGACGACGACAACCAACTAGAAATCGTCGACGTCCAAGTTGTGGAACACATTGATTTTTTTCATTAAATGAAAATTGTTAAATTATCGTATTAGACAT

Coding sequence (CDS)

ATGTATGATGTACCTATTGTACCTGCTCCAGTTCAAAGGAGACGTACTCTAGTGCAAAAGCTTGATGAATTGGAAGAAGTTGACCAAAACGTGGAAGAAGTGCCTCCTATCACACAAACACAGAGCGAGACTGGTTACGTTAGTCCAATGATGATGATGTCGGCGTTTGGAACGAGATATTATTATCCAGGAGTTGGTCAATCGTCAGGCTTCGGAACATGA

Protein sequence

MYDVPIVPAPVQRRRTLVQKLDELEEVDQNVEEVPPITQTQSETGYVSPMMMMSAFGTRYYYPGVGQSSGFGT

Homology

[Close]

BLAST of MELO3C031696.2 vs. NCBI nr
Match: XP_011652738.1 (PREDICTED: uncharacterized protein LOC105435074 [Cucumis sativus])

HSP 1 Score: 75.1 bits (183), Expect = 1.1e-10
Identity = 40/54 (74.07%), Postives = 43/54 (79.63%), Query Frame = 0


Query: 20  KLDELEEVDQNVEEVPPITQTQSETGYVSPMMMMSAFGTRYYYPGVGQSSGFGT 74
           K D+LEEVDQNVEEV P+TQTQSE GYVS +MMM  FGT YY  GVGQSS F T
Sbjct: 167 KSDQLEEVDQNVEEVAPVTQTQSEHGYVSLVMMMPTFGTTYYDYGVGQSSDFRT 220

[Close]

BLAST of MELO3C031696.2 vs. NCBI nr
Match: XP_008449513.1 (PREDICTED: mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo])

HSP 1 Score: 71.6 bits (174), Expect = 1.2e-09
Identity = 39/50 (78.00%), Postives = 43/50 (86.00%), Query Frame = 0


Query: 1   MYDVPIVPAPVQRRRTLVQKLDELEEVDQNVEEVPPI--TQTQSETGYVS 49
           MYDVPIVPAPVQRRR LVQ+ D+LEEVDQ+ EEVPP+  TQTQSE  YVS
Sbjct: 83  MYDVPIVPAPVQRRRPLVQESDQLEEVDQHGEEVPPMTQTQTQSEHNYVS 132

[Close]

BLAST of MELO3C031696.2 vs. NCBI nr
Match: XP_016900498.1 (PREDICTED: GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo])

HSP 1 Score: 71.6 bits (174), Expect = 1.2e-09
Identity = 39/50 (78.00%), Postives = 43/50 (86.00%), Query Frame = 0


Query: 1   MYDVPIVPAPVQRRRTLVQKLDELEEVDQNVEEVPPI--TQTQSETGYVS 49
           MYDVPIVPAPVQRRR LVQ+ D+LEEVDQ+ EEVPP+  TQTQSE  YVS
Sbjct: 63  MYDVPIVPAPVQRRRPLVQESDQLEEVDQHGEEVPPMTQTQTQSEHNYVS 112

[Close]

BLAST of MELO3C031696.2 vs. TrEMBL
Match: tr|A0A1S3BLK4|A0A1S3BLK4_CUCME (mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103491376 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 8.1e-10
Identity = 39/50 (78.00%), Postives = 43/50 (86.00%), Query Frame = 0


Query: 1   MYDVPIVPAPVQRRRTLVQKLDELEEVDQNVEEVPPI--TQTQSETGYVS 49
           MYDVPIVPAPVQRRR LVQ+ D+LEEVDQ+ EEVPP+  TQTQSE  YVS
Sbjct: 83  MYDVPIVPAPVQRRRPLVQESDQLEEVDQHGEEVPPMTQTQTQSEHNYVS 132

[Close]

BLAST of MELO3C031696.2 vs. TrEMBL
Match: tr|A0A1S4DWZ9|A0A1S4DWZ9_CUCME (GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103491376 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 8.1e-10
Identity = 39/50 (78.00%), Postives = 43/50 (86.00%), Query Frame = 0


Query: 1   MYDVPIVPAPVQRRRTLVQKLDELEEVDQNVEEVPPI--TQTQSETGYVS 49
           MYDVPIVPAPVQRRR LVQ+ D+LEEVDQ+ EEVPP+  TQTQSE  YVS
Sbjct: 63  MYDVPIVPAPVQRRRPLVQESDQLEEVDQHGEEVPPMTQTQTQSEHNYVS 112

The following BLAST results are available for this feature:

BLAST of MELO3C031696.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011652738.1	1.1e-10	74.07	PREDICTED: uncharacterized protein LOC105435074 [Cucumis sativus]	[more]
XP_008449513.1	1.2e-09	78.00	PREDICTED: mediator of RNA polymerase II transcription subunit 12-like isoform X...	[more]
XP_016900498.1	1.2e-09	78.00	PREDICTED: GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumi...	[more]

BLAST of MELO3C031696.2 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of MELO3C031696.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C031696.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BLK4\|A0A1S3BLK4_CUCME	8.1e-10	78.00	mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi...	[more]
tr\|A0A1S4DWZ9\|A0A1S4DWZ9_CUCME	8.1e-10	78.00	GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo OX...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C031696.2.1	MELO3C031696.2.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C031696.2	Cucumber (Gy14) v2	cgybmedB215
MELO3C031696.2	Cucumber (Gy14) v2	cgybmedB492
MELO3C031696.2	Cucumber (Gy14) v1	cgymedB379
MELO3C031696.2	Cucumber (Gy14) v1	cgymedB412
MELO3C031696.2	Cucurbita maxima (Rimu)	cmamedB346
MELO3C031696.2	Cucurbita maxima (Rimu)	cmamedB560
MELO3C031696.2	Cucurbita maxima (Rimu)	cmamedB777
MELO3C031696.2	Cucurbita moschata (Rifu)	cmomedB332
MELO3C031696.2	Cucurbita moschata (Rifu)	cmomedB547
MELO3C031696.2	Cucurbita moschata (Rifu)	cmomedB774
MELO3C031696.2	Cucurbita pepo (Zucchini)	cpemedB234
MELO3C031696.2	Cucurbita pepo (Zucchini)	cpemedB481
MELO3C031696.2	Wild cucumber (PI 183967)	cpimedB239
MELO3C031696.2	Wild cucumber (PI 183967)	cpimedB552
MELO3C031696.2	Cucumber (Chinese Long) v2	cumedB238
MELO3C031696.2	Cucumber (Chinese Long) v2	cumedB534
MELO3C031696.2	Bottle gourd (USVL1VR-Ls)	lsimedB280
MELO3C031696.2	Bottle gourd (USVL1VR-Ls)	lsimedB384
MELO3C031696.2	Watermelon (Charleston Gray)	medwcgB413
MELO3C031696.2	Watermelon (Charleston Gray)	medwcgB417
MELO3C031696.2	Watermelon (97103) v1	medwmB448
MELO3C031696.2	Watermelon (97103) v1	medwmB472
MELO3C031696.2	Silver-seed gourd	carmedB0220
MELO3C031696.2	Silver-seed gourd	carmedB0384
MELO3C031696.2	Silver-seed gourd	carmedB0661
MELO3C031696.2	Cucumber (Chinese Long) v3	cucmedB246
MELO3C031696.2	Cucumber (Chinese Long) v3	cucmedB566
MELO3C031696.2	Watermelon (97103) v2	medwmbB421
MELO3C031696.2	Watermelon (97103) v2	medwmbB424
MELO3C031696.2	Wax gourd	medwgoB531