MELO3C031304.2 (gene) Melon (DHL92) v3.6.1

Overview
NameMELO3C031304.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionCLAVATA3/ESR (CLE)-related protein TDIF
Locationchr05 : 8255930 .. 8256190 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAAAACATTTTGAAGAGTATTTGAAGTCTCAAACTTGCTTCTTCCTCTTCCTCCTCGTTCTCCTTCTTCTCGTCGTTCCTCATTGCTTCTCGACAGAGCCGAATACTCCGCCCAGTCCTCCTTCAAATTCTATGGCCATGGCAAAAGAAGACTTATTCTCTAGCCCTAGTTCAAGTAAAAGAACATTATTATTGCAACAGTTTGAAGCAGCTATGCATGAAGTTCCTAGTGGCCCAAATCCCACATCCAACAAGTAA

mRNA sequence

ATGGCAAAACATTTTGAAGAGTATTTGAAGTCTCAAACTTGCTTCTTCCTCTTCCTCCTCGTTCTCCTTCTTCTCGTCGTTCCTCATTGCTTCTCGACAGAGCCGAATACTCCGCCCAGTCCTCCTTCAAATTCTATGGCCATGGCAAAAGAAGACTTATTCTCTAGCCCTAGTTCAAGTAAAAGAACATTATTATTGCAACAGTTTGAAGCAGCTATGCATGAAGTTCCTAGTGGCCCAAATCCCACATCCAACAAGTAA

Coding sequence (CDS)

ATGGCAAAACATTTTGAAGAGTATTTGAAGTCTCAAACTTGCTTCTTCCTCTTCCTCCTCGTTCTCCTTCTTCTCGTCGTTCCTCATTGCTTCTCGACAGAGCCGAATACTCCGCCCAGTCCTCCTTCAAATTCTATGGCCATGGCAAAAGAAGACTTATTCTCTAGCCCTAGTTCAAGTAAAAGAACATTATTATTGCAACAGTTTGAAGCAGCTATGCATGAAGTTCCTAGTGGCCCAAATCCCACATCCAACAAGTAA

Protein sequence

MAKHFEEYLKSQTCFFLFLLVLLLLVVPHCFSTEPNTPPSPPSNSMAMAKEDLFSSPSSSKRTLLLQQFEAAMHEVPSGPNPTSNK
Homology
[Close]
BLAST of MELO3C031304.2 vs. NCBI nr
Match: KGN61461.1 (CLAVATA3/ESR-related protein [Cucumis sativus])

HSP 1 Score: 59.3 bits (142), Expect = 7.4e-06
Identity = 40/86 (46.51%), Postives = 41/86 (47.67%), Query Frame = 0 

Query: 1  MAKHFEEYLKSQTCFFXXXXXXXXXXXXXXFSTEXXXXXXXXXXXMAMAKEDLFSSPSSS 60
          MAKHFE+YLKSQ CFF     XXX       ST            MAM            
Sbjct: 1  MAKHFEDYLKSQACFFLFLLVXXXLVVPHRCSTVPNTPSRPPSNFMAM------------ 60

Query: 61 KRTLLLQQFEAAMHEVPSGPNPTSNK 87
                  FEAAMHEVPSGPNPTSNK
Sbjct: 61 --------FEAAMHEVPSGPNPTSNK 66

[Close]
BLAST of MELO3C031304.2 vs. TrEMBL
Match: tr|A0A0A0LNB8|A0A0A0LNB8_CUCSA (CLAVATA3/ESR-related protein OS=Cucumis sativus OX=3659 GN=Csa_2G131680 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 4.9e-06
Identity = 40/86 (46.51%), Postives = 41/86 (47.67%), Query Frame = 0 

Query: 1  MAKHFEEYLKSQTCFFXXXXXXXXXXXXXXFSTEXXXXXXXXXXXMAMAKEDLFSSPSSS 60
          MAKHFE+YLKSQ CFF     XXX       ST            MAM            
Sbjct: 1  MAKHFEDYLKSQACFFLFLLVXXXLVVPHRCSTVPNTPSRPPSNFMAM------------ 60

Query: 61 KRTLLLQQFEAAMHEVPSGPNPTSNK 87
                  FEAAMHEVPSGPNPTSNK
Sbjct: 61 --------FEAAMHEVPSGPNPTSNK 66

The following BLAST results are available for this feature:
BLAST of MELO3C031304.2 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN61461.17.4e-0646.51CLAVATA3/ESR-related protein [Cucumis sativus][more]
BLAST of MELO3C031304.2 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of MELO3C031304.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of MELO3C031304.2 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LNB8|A0A0A0LNB8_CUCSA4.9e-0646.51CLAVATA3/ESR-related protein OS=Cucumis sativus OX=3659 GN=Csa_2G131680 PE=4 SV=... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0045168 cell-cell signaling involved in cell fate commitment
biological_process GO:0030154 cell differentiation
biological_process GO:0007275 multicellular organism development
biological_process GO:0010087 phloem or xylem histogenesis
biological_process GO:0010067 procambium histogenesis
biological_process GO:0010089 xylem development
biological_process GO:0008150 biological_process
cellular_component GO:0048046 apoplast
cellular_component GO:0005576 extracellular region
cellular_component GO:0005615 extracellular space
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0016020 membrane
cellular_component GO:0005886 plasma membrane
cellular_component GO:0005575 cellular_component
molecular_function GO:0033612 receptor serine/threonine kinase binding
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C031304.2.1MELO3C031304.2.1mRNA


InterPro
Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 33..60

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
MELO3C031304.2Csa2G131680Cucumber (Chinese Long) v2cumedB127
MELO3C031304.2Lsi09G011540Bottle gourd (USVL1VR-Ls)lsimedB027
MELO3C031304.2CsaV3_2G011430Cucumber (Chinese Long) v3cucmedB129
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C031304.2Silver-seed gourdcarmedB0240
MELO3C031304.2Silver-seed gourdcarmedB0945
MELO3C031304.2Silver-seed gourdcarmedB1060
MELO3C031304.2Cucumber (Chinese Long) v3cucmedB222
MELO3C031304.2Cucumber (Chinese Long) v3cucmedB224
MELO3C031304.2Watermelon (97103) v2medwmbB374
MELO3C031304.2Watermelon (97103) v2medwmbB378
MELO3C031304.2Watermelon (97103) v2medwmbB391
MELO3C031304.2Wax gourdmedwgoB453
MELO3C031304.2Cucumber (Gy14) v1cgymedB442
MELO3C031304.2Cucumber (Gy14) v2cgybmedB114
MELO3C031304.2Cucumber (Gy14) v2cgybmedB195
MELO3C031304.2Cucumber (Gy14) v2cgybmedB197
MELO3C031304.2Cucumber (Gy14) v1cgymedB429
MELO3C031304.2Cucurbita maxima (Rimu)cmamedB266
MELO3C031304.2Cucurbita maxima (Rimu)cmamedB394
MELO3C031304.2Cucurbita maxima (Rimu)cmamedB657
MELO3C031304.2Cucurbita maxima (Rimu)cmamedB860
MELO3C031304.2Cucurbita maxima (Rimu)cmamedB946
MELO3C031304.2Cucurbita moschata (Rifu)cmomedB250
MELO3C031304.2Cucurbita moschata (Rifu)cmomedB381
MELO3C031304.2Cucurbita moschata (Rifu)cmomedB644
MELO3C031304.2Cucurbita moschata (Rifu)cmomedB854
MELO3C031304.2Cucurbita moschata (Rifu)cmomedB935
MELO3C031304.2Cucurbita pepo (Zucchini)cpemedB166
MELO3C031304.2Cucurbita pepo (Zucchini)cpemedB362
MELO3C031304.2Cucurbita pepo (Zucchini)cpemedB685
MELO3C031304.2Cucurbita pepo (Zucchini)cpemedB825
MELO3C031304.2Cucurbita pepo (Zucchini)cpemedB944
MELO3C031304.2Wild cucumber (PI 183967)cpimedB127
MELO3C031304.2Wild cucumber (PI 183967)cpimedB219
MELO3C031304.2Wild cucumber (PI 183967)cpimedB221
MELO3C031304.2Cucumber (Chinese Long) v2cumedB218
MELO3C031304.2Cucumber (Chinese Long) v2cumedB220
MELO3C031304.2Melon (DHL92) v3.6.1medmedB144
MELO3C031304.2Bottle gourd (USVL1VR-Ls)lsimedB375
MELO3C031304.2Watermelon (Charleston Gray)medwcgB376
MELO3C031304.2Watermelon (Charleston Gray)medwcgB378
MELO3C031304.2Watermelon (Charleston Gray)medwcgB390
MELO3C031304.2Watermelon (97103) v1medwmB404
MELO3C031304.2Watermelon (97103) v1medwmB418