CsaV3_2G011430 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_2G011430
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionCLAVATA3/ESR-related protein
Locationchr2 : 8729651 .. 8729911 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAAAACATTTTGAAGATTATTTGAAGTCTCAAGCTTGCTTCTTTCTCTTCCTCCTCGTTCTTCTTCTTCTCGTCGTTCCTCATCGCTGCTCGACAGTGCCGAATACTCCATCTCGTCCTCCTTCAAATTTTATGGCCATGGTAAAAGAAGACTTATTCTCTAGCCCTAGTTCAAGTAAAAGAACATTATTGTTGCAACAGTTTGAAGCAGCTATGCATGAAGTTCCTAGTGGCCCAAATCCCACATCCAACAAGTAA

mRNA sequence

ATGGCAAAACATTTTGAAGATTATTTGAAGTCTCAAGCTTGCTTCTTTCTCTTCCTCCTCGTTCTTCTTCTTCTCGTCGTTCCTCATCGCTGCTCGACAGTGCCGAATACTCCATCTCGTCCTCCTTCAAATTTTATGGCCATGTTTGAAGCAGCTATGCATGAAGTTCCTAGTGGCCCAAATCCCACATCCAACAAGTAA

Coding sequence (CDS)

ATGGCAAAACATTTTGAAGATTATTTGAAGTCTCAAGCTTGCTTCTTTCTCTTCCTCCTCGTTCTTCTTCTTCTCGTCGTTCCTCATCGCTGCTCGACAGTGCCGAATACTCCATCTCGTCCTCCTTCAAATTTTATGGCCATGTTTGAAGCAGCTATGCATGAAGTTCCTAGTGGCCCAAATCCCACATCCAACAAGTAA

Protein sequence

MAKHFEDYLKSQACFFLFLLVLLLLVVPHRCSTVPNTPSRPPSNFMAMFEAAMHEVPSGPNPTSNK
Homology
[Close]
BLAST of CsaV3_2G011430 vs. NCBI nr
Match: KGN61461.1 (CLAVATA3/ESR-related protein [Cucumis sativus])

HSP 1 Score: 134.4 bits (337), Expect = 1.4e-28
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 0 

Query: 1  MAKHFEDYLKSQACFFLFLLVXXXLVVPHRCSTVPNTPSRPPSNFMAMFEAAMHEVPSGP 60
          MAKHFEDYLKSQACFFLFLLVXXXLVVPHRCSTVPNTPSRPPSNFMAMFEAAMHEVPSGP
Sbjct: 1  MAKHFEDYLKSQACFFLFLLVXXXLVVPHRCSTVPNTPSRPPSNFMAMFEAAMHEVPSGP 60

Query: 61 NPTSNK 67
          NPTSNK
Sbjct: 61 NPTSNK 66

[Close]
BLAST of CsaV3_2G011430 vs. TrEMBL
Match: tr|A0A0A0LNB8|A0A0A0LNB8_CUCSA (CLAVATA3/ESR-related protein OS=Cucumis sativus OX=3659 GN=Csa_2G131680 PE=4 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 9.3e-29
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 0 

Query: 1  MAKHFEDYLKSQACFFLFLLVXXXLVVPHRCSTVPNTPSRPPSNFMAMFEAAMHEVPSGP 60
          MAKHFEDYLKSQACFFLFLLVXXXLVVPHRCSTVPNTPSRPPSNFMAMFEAAMHEVPSGP
Sbjct: 1  MAKHFEDYLKSQACFFLFLLVXXXLVVPHRCSTVPNTPSRPPSNFMAMFEAAMHEVPSGP 60

Query: 61 NPTSNK 67
          NPTSNK
Sbjct: 61 NPTSNK 66

The following BLAST results are available for this feature:
BLAST of CsaV3_2G011430 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN61461.11.4e-28100.00CLAVATA3/ESR-related protein [Cucumis sativus][more]
BLAST of CsaV3_2G011430 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_2G011430 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_2G011430 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LNB8|A0A0A0LNB8_CUCSA9.3e-29100.00CLAVATA3/ESR-related protein OS=Cucumis sativus OX=3659 GN=Csa_2G131680 PE=4 SV=... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_2G011430.1CsaV3_2G011430.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_2G011430Lsi09G011540Bottle gourd (USVL1VR-Ls)cuclsiB101
CsaV3_2G011430MELO3C031304.2Melon (DHL92) v3.6.1cucmedB129
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_2G011430Watermelon (97103) v2cucwmbB142
CsaV3_2G011430Wax gourdcucwgoB133
CsaV3_2G011430Silver-seed gourdcarcucB0257
CsaV3_2G011430Silver-seed gourdcarcucB1122
CsaV3_2G011430Cucumber (Gy14) v2cgybcucB064
CsaV3_2G011430Cucumber (Gy14) v1cgycucB383
CsaV3_2G011430Cucumber (Gy14) v1cgycucB408
CsaV3_2G011430Cucurbita maxima (Rimu)cmacucB0276
CsaV3_2G011430Cucurbita maxima (Rimu)cmacucB0424
CsaV3_2G011430Cucurbita maxima (Rimu)cmacucB1047
CsaV3_2G011430Cucurbita moschata (Rifu)cmocucB0266
CsaV3_2G011430Cucurbita moschata (Rifu)cmocucB0417
CsaV3_2G011430Cucurbita moschata (Rifu)cmocucB1031
CsaV3_2G011430Cucurbita pepo (Zucchini)cpecucB0151
CsaV3_2G011430Cucurbita pepo (Zucchini)cpecucB0375
CsaV3_2G011430Wild cucumber (PI 183967)cpicucB080
CsaV3_2G011430Melon (DHL92) v3.5.1cucmeB136
CsaV3_2G011430Melon (DHL92) v3.5.1cucmeB149
CsaV3_2G011430Melon (DHL92) v3.6.1cucmedB142
CsaV3_2G011430Watermelon (Charleston Gray)cucwcgB154
CsaV3_2G011430Watermelon (Charleston Gray)cucwcgB155
CsaV3_2G011430Watermelon (97103) v1cucwmB143
CsaV3_2G011430Watermelon (97103) v1cucwmB179