MELO3C031190.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C031190.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	S-protein homolog 5
Location	chr05 : 13661155 .. 13662528 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGTTAGCTTGGATTTGGCTACATAGTGTGGCAAGGCGGTAAAGAGACACGTGTAAAGTTGTAATCCTGAGTCCAAAGTTGGAACTTTGTGTTGGAGATTAGTTTAAGAAGTTCTGCTTACTAGGCGTTCAACTTGTTATCTCACGGAGAGGTATGCATTGGGTGTCTAAACAACGCGTCTCCTTCTGGTCGCATGAAGTGGCTAGTGGAACGAGGAGTGACATTGGGTGATTTGTTTACTAAGCTAGAGAATACCTCTTTTTTCTCTAAGATTGATTTGAGATCAAATTGTCATCAACTAAGAATTAAGAAGTTACATATACCAAAAATGACATTCAAAATGTGTTTTGGACATTCTAAATTCTTAGGACGTCATTTAGCTTGCTTAACACCCAACCTGCATTGGGCTTAGTGAATTGAATATTTATCGCCTAATAAATTTTATAATTTTTCTTTTAAATATTTGATTCAGTTTCTAACTTTTGCTTTTATCCCATTTTCAGTATTTTCTTACTTAAATAATAAACTAATTTTTTAAAAAAAAAGTAGAAAAAGAAAAACAAAATAAAGAAACGAAATGATATAACTTGCAATTACAGAGTTCATTGTGCACCAAAAACTATTTCTTCTTATCTTTTATCTCTCTAATTTGTTTTAATTAATTGTGTGGATGTAGGATAACATGCACTAATTATAACATTAATTATGAAATAAATTCTCCAATTTTTACATATATTTCATATATTTCTTACTTTACTTTTATTTTATTTTATTATTAGTTGTGCATGAATATGAAATGCTAACTTGTAGTTACATAGAATCTGTTATGGGTTCTCAAAAATTCTCGTGCTTCCTTCTTATAATTATTTATGGTAAATGGATGTTAATATCTAACTTACAATTATAATTGACACTCTTTTCAGGGAAACTTTTTAGTATTGCAGTTTCCTACAATACCATCAAACCTTCCCTATATATTTGAACCTTTTGATTATATCCTCTTTGCAATCAAAGAACTTGAAAACAAAAACAAATAATTGATATATTATTACATTGTCATAGTTCTTTATCTTTTTCATTGGCAAAATGACTTCATCTTTAGCACTTGCATTCTCAATGTTTTTGTTGCTACCCATTAGCTTACGTGCCACAGATGAATTGATCTCACTTTTACCTGAAACTACAGTCACTATTTTTAACAAAGTGGGTGGCCCTCTGTTGGACATTCATTGTAGATCCAAGCAAAATGATCTAGGAGTTAATGTCGTATAGTCAAATAAAAGTTACTCATTTAACTTTAGACCCAACATCTGGGGAACGACATTATTTTATTGCGTCTTCGAATGGGTAGGTCAACCCCTCTACTTCACCA

mRNA sequence

ATGTGTTAGCTTGGATTTGGCTACATAGTGTGGCAAGGCGGTAAAGAGACACGTGTAAAGTTGTAATCCTGAGTCCAAAGTTGGAACTTTGTGTTGGAGATTAGTTTAAGAAGTTCTGCTTACTAGGCGTTCAACTTGTTATCTCACGGAGAGGTATGCATTGGGTGTCTAAACAACGCGTCTCCTTCTGGTCGCATGAAGTGGCTAGTGGAACGAGGAGTGACATTGGCACTTGCATTCTCAATGTTTTTGTTGCTACCCATTAGCTTACGTGCCACAGATGAATTGATCTCACTTTTACCTGAAACTACAGTCACTATTTTTAACAAAGTGGGTGGCCCTCTGTTGGACATTCATTGTAGATCCAAGCAAAATGATCTAGGAGTTAATGTCGTATAGTCAAATAAAAGTTACTCATTTAACTTTAGACCCAACATCTGGGGAACGACATTATTTTATTGCGTCTTCGAATGGGTAGGTCAACCCCTCTACTTCACCA

Coding sequence (CDS)

ATGAAGTGGCTAGTGGAACGAGGAGTGACATTGGCACTTGCATTCTCAATGTTTTTGTTGCTACCCATTAGCTTACGTGCCACAGATGAATTGATCTCACTTTTACCTGAAACTACAGTCACTATTTTTAACAAAGTGGGTGGCCCTCTGTTGGACATTCATTGTAGATCCAAGCAAAATGATCTAGGAGTTAATGTCGTATAG

Protein sequence

MKWLVERGVTLALAFSMFLLLPISLRATDELISLLPETTVTIFNKVGGPLLDIHCRSKQNDLGVNVV

Homology

[Close]

BLAST of MELO3C031190.2 vs. NCBI nr
Match: ABY56091.1 (self-incompatibility protein 1 [Cucumis melo] >ABY56095.1 self-incompatibility protein 3 [Cucumis melo] >ABY56096.1 self-incompatibility protein 4 [Cucumis melo])

HSP 1 Score: 100.1 bits (248), Expect = 2.9e-18
Identity = 51/58 (87.93%), Postives = 54/58 (93.10%), Query Frame = 0


Query: 10 TLALAFSMFLLLPISLRATDELISLLPETTVTIFNKVGGPLLDIHCRSKQNDLGVNVV 68
          +LAL FSMFLLLPISL ATDELISLLPETTVTI N+VGGPLL IHCRSKQ+DLGVNVV
Sbjct: 4  SLALGFSMFLLLPISLHATDELISLLPETTVTIVNEVGGPLLGIHCRSKQDDLGVNVV 61

[Close]

BLAST of MELO3C031190.2 vs. NCBI nr
Match: ABY56092.1 (self-incompatibility protein 2 [Cucumis melo])

HSP 1 Score: 99.8 bits (247), Expect = 3.8e-18
Identity = 51/60 (85.00%), Postives = 54/60 (90.00%), Query Frame = 0


Query: 8   GVTLALAFSMFLLLPISLRATDELISLLPETTVTIFNKVGGPLLDIHCRSKQNDLGVNVV 67
           G  +AL FSMFLLLPISL ATDELISLLPETTVTI N+VGGPLL IHCRSKQ+DLGVNVV
Sbjct: 72  GRDIALGFSMFLLLPISLHATDELISLLPETTVTIVNEVGGPLLGIHCRSKQDDLGVNVV 131

[Close]

BLAST of MELO3C031190.2 vs. NCBI nr
Match: XP_013603996.1 (PREDICTED: uncharacterized protein LOC106311341 [Brassica oleracea var. oleracea])

HSP 1 Score: 57.4 bits (137), Expect = 2.2e-05
Identity = 23/51 (45.10%), Postives = 37/51 (72.55%), Query Frame = 0


Query: 17 MFLLLPISLRATDELISLLPETTVTIFNKVGGPLLDIHCRSKQNDLGVNVV 68
          +FL++ +    + EL    P+TTVT+ N +GGPLL +HC+SK +DLG+++V
Sbjct: 10 VFLIMVLLFGPSHELAPFWPDTTVTVINNLGGPLLTVHCKSKDDDLGIHIV 60

[Close]

BLAST of MELO3C031190.2 vs. NCBI nr
Match: XP_009111091.1 (PREDICTED: uncharacterized protein LOC103836563 [Brassica rapa])

HSP 1 Score: 54.7 bits (130), Expect = 1.4e-04
Identity = 23/51 (45.10%), Postives = 36/51 (70.59%), Query Frame = 0


Query: 17 MFLLLPISLRATDELISLLPETTVTIFNKVGGPLLDIHCRSKQNDLGVNVV 68
          +FL++ +    + EL    P+TTV + N +GGPLL +HC+SK +DLGV++V
Sbjct: 10 VFLIMVLLFGPSHELAPFWPDTTVIVINNLGGPLLTVHCKSKNDDLGVHMV 60

[Close]

BLAST of MELO3C031190.2 vs. TAIR10
Match: AT1G04645.1 (Plant self-incompatibility protein S1 family)

HSP 1 Score: 46.2 bits (108), Expect = 9.1e-06
Identity = 19/30 (63.33%), Postives = 25/30 (83.33%), Query Frame = 0


Query: 38 TTVTIFNKVGGPLLDIHCRSKQNDLGVNVV 68
          T VT+ N +GGP L IHC+SKQ+DLG++VV
Sbjct: 29 TVVTMTNLIGGPPLTIHCKSKQDDLGIHVV 58

[Close]

BLAST of MELO3C031190.2 vs. Swiss-Prot
Match: sp|O23020|SPH5_ARATH (S-protein homolog 5 OS=Arabidopsis thaliana OX=3702 GN=SPH5 PE=2 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 1.6e-04
Identity = 19/30 (63.33%), Postives = 25/30 (83.33%), Query Frame = 0


Query: 38 TTVTIFNKVGGPLLDIHCRSKQNDLGVNVV 68
          T VT+ N +GGP L IHC+SKQ+DLG++VV
Sbjct: 29 TVVTMTNLIGGPPLTIHCKSKQDDLGIHVV 58

[Close]

BLAST of MELO3C031190.2 vs. TrEMBL
Match: tr|B0F817|B0F817_CUCME (Self-incompatibility protein 1 OS=Cucumis melo OX=3656 PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 1.9e-18
Identity = 51/58 (87.93%), Postives = 54/58 (93.10%), Query Frame = 0


Query: 10 TLALAFSMFLLLPISLRATDELISLLPETTVTIFNKVGGPLLDIHCRSKQNDLGVNVV 68
          +LAL FSMFLLLPISL ATDELISLLPETTVTI N+VGGPLL IHCRSKQ+DLGVNVV
Sbjct: 4  SLALGFSMFLLLPISLHATDELISLLPETTVTIVNEVGGPLLGIHCRSKQDDLGVNVV 61

[Close]

BLAST of MELO3C031190.2 vs. TrEMBL
Match: tr|B0F818|B0F818_CUCME (Self-incompatibility protein 2 OS=Cucumis melo OX=3656 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 2.5e-18
Identity = 51/60 (85.00%), Postives = 54/60 (90.00%), Query Frame = 0


Query: 8   GVTLALAFSMFLLLPISLRATDELISLLPETTVTIFNKVGGPLLDIHCRSKQNDLGVNVV 67
           G  +AL FSMFLLLPISL ATDELISLLPETTVTI N+VGGPLL IHCRSKQ+DLGVNVV
Sbjct: 72  GRDIALGFSMFLLLPISLHATDELISLLPETTVTIVNEVGGPLLGIHCRSKQDDLGVNVV 131

[Close]

BLAST of MELO3C031190.2 vs. TrEMBL
Match: tr|A0A0D3DIV6|A0A0D3DIV6_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea OX=109376 GN=106311341 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 1.4e-05
Identity = 23/51 (45.10%), Postives = 37/51 (72.55%), Query Frame = 0


Query: 17 MFLLLPISLRATDELISLLPETTVTIFNKVGGPLLDIHCRSKQNDLGVNVV 68
          +FL++ +    + EL    P+TTVT+ N +GGPLL +HC+SK +DLG+++V
Sbjct: 10 VFLIMVLLFGPSHELAPFWPDTTVTVINNLGGPLLTVHCKSKDDDLGIHIV 60

The following BLAST results are available for this feature:

BLAST of MELO3C031190.2 vs. NCBI nr


Match Name	E-value	Identity	Description
ABY56091.1	2.9e-18	87.93	self-incompatibility protein 1 [Cucumis melo] >ABY56095.1 self-incompatibility p...	[more]
ABY56092.1	3.8e-18	85.00	self-incompatibility protein 2 [Cucumis melo]	[more]
XP_013603996.1	2.2e-05	45.10	PREDICTED: uncharacterized protein LOC106311341 [Brassica oleracea var. oleracea...	[more]
XP_009111091.1	1.4e-04	45.10	PREDICTED: uncharacterized protein LOC103836563 [Brassica rapa]	[more]

BLAST of MELO3C031190.2 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G04645.1	9.1e-06	63.33	Plant self-incompatibility protein S1 family	[more]

BLAST of MELO3C031190.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|O23020\|SPH5_ARATH	1.6e-04	63.33	S-protein homolog 5 OS=Arabidopsis thaliana OX=3702 GN=SPH5 PE=2 SV=1	[more]

BLAST of MELO3C031190.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|B0F817\|B0F817_CUCME	1.9e-18	87.93	Self-incompatibility protein 1 OS=Cucumis melo OX=3656 PE=4 SV=1	[more]
tr\|B0F818\|B0F818_CUCME	2.5e-18	85.00	Self-incompatibility protein 2 OS=Cucumis melo OX=3656 PE=4 SV=1	[more]
tr\|A0A0D3DIV6\|A0A0D3DIV6_BRAOL	1.4e-05	45.10	Uncharacterized protein OS=Brassica oleracea var. oleracea OX=109376 GN=10631134...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005576	extracellular region
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C031190.2.1	MELO3C031190.2.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C031190.2	Cucumber (Chinese Long) v3	cucmedB137
MELO3C031190.2	Watermelon (97103) v2	medwmbB362
MELO3C031190.2	Watermelon (97103) v2	medwmbB366
MELO3C031190.2	Wax gourd	medwgoB458
MELO3C031190.2	Cucumber (Gy14) v2	cgybmedB122
MELO3C031190.2	Cucumber (Gy14) v1	cgymedB340
MELO3C031190.2	Cucurbita maxima (Rimu)	cmamedB494
MELO3C031190.2	Cucurbita maxima (Rimu)	cmamedB833
MELO3C031190.2	Cucurbita moschata (Rifu)	cmomedB481
MELO3C031190.2	Cucurbita moschata (Rifu)	cmomedB823
MELO3C031190.2	Cucurbita pepo (Zucchini)	cpemedB125
MELO3C031190.2	Wild cucumber (PI 183967)	cpimedB135
MELO3C031190.2	Cucumber (Chinese Long) v2	cumedB135
MELO3C031190.2	Bottle gourd (USVL1VR-Ls)	lsimedB125
MELO3C031190.2	Watermelon (Charleston Gray)	medwcgB365
MELO3C031190.2	Watermelon (97103) v1	medwmB412