MELO3C030658.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C030658.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	Cytochrome P450
Location	chr04 : 23419693 .. 23419882 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGGTGGCGGAGGGAATTCATTGACGACGGACAAGGAATTGGTGACACTTTGTTCGGAGTTTTTGAACAGCGGGACGGACACGACGGAGACAGTGATAGAGTGGGGGATGGTGGAATCGATAGCGAATAAGGAAGTTTAGAGGAAGATTGTGGAAGAAATTAAAGATACGATTGGTGAGAGAAAAGTAGAG

mRNA sequence

TGGTGGCGGAGGGAATTCATTGACGACGGACAAGGAATTGGTGACACTTTGTTCGGAGTTTTTGAACAGCGGGACGGACACGACGGAGACAGTGATAGAGTGGGGGATGGTGGAATCGATAGCGAATAAGGAAGTTTAGAGGAAGATTGTGGAAGAAATTAAAGATACGATTGGTGAGAGAAAAGTAGAG

Coding sequence (CDS)

GGTGGCGGAGGGAATTCATTGACGACGGACAAGGAATTGGTGACACTTTGTTCGGAGTTTTTGAACAGCGGGACGGACACGACGGAGACAGTGATAGAGTGGGGGATGGTGGAATCGATAGCGAATAAGGAAGTTTAG

Protein sequence

GGGGNSLTTDKELVTLCSEFLNSGTDTTETVIEWGMVESIANKEV

Homology

[Close]

BLAST of MELO3C030658.2 vs. NCBI nr
Match: XP_008446777.2 (PREDICTED: LOW QUALITY PROTEIN: cytochrome P450 77A3-like [Cucumis melo])

HSP 1 Score: 72.8 bits (177), Expect = 3.4e-10
Identity = 34/44 (77.27%), Postives = 38/44 (86.36%), Query Frame = 0


Query: 2   GGGNSLTTDKELVTLCSEFLNSGTDTTETVIEWGMVESIANKEV 46
           GGGNS  T++ELVTLCSEFLN GTDTT TVIEWGM E IAN+E+
Sbjct: 285 GGGNSSATEEELVTLCSEFLNGGTDTTATVIEWGMAELIANEEI 328

[Close]

BLAST of MELO3C030658.2 vs. NCBI nr
Match: XP_011655840.1 (PREDICTED: cytochrome P450 77A3-like [Cucumis sativus] >KGN52206.1 hypothetical protein Csa_5G615280 [Cucumis sativus])

HSP 1 Score: 68.2 bits (165), Expect = 8.3e-09
Identity = 33/45 (73.33%), Postives = 37/45 (82.22%), Query Frame = 0


Query: 1   GGGGNSLTTDKELVTLCSEFLNSGTDTTETVIEWGMVESIANKEV 46
           G G +S  TD+ELVTLCSEFLN GTDTT TVIEWGM E IAN+E+
Sbjct: 285 GEGKSSSATDEELVTLCSEFLNGGTDTTATVIEWGMAELIANEEI 329

[Close]

BLAST of MELO3C030658.2 vs. NCBI nr
Match: XP_022957595.1 (cytochrome P450 77A3-like [Cucurbita moschata])

HSP 1 Score: 62.4 bits (150), Expect = 4.6e-07
Identity = 30/43 (69.77%), Postives = 32/43 (74.42%), Query Frame = 0


Query: 3   GGNSLTTDKELVTLCSEFLNSGTDTTETVIEWGMVESIANKEV 46
           GG +  TD+ELVTLCSEFLN GTDTT T IEWGM E I N  V
Sbjct: 290 GGRAAATDEELVTLCSEFLNGGTDTTATAIEWGMAELIENPGV 332

[Close]

BLAST of MELO3C030658.2 vs. NCBI nr
Match: XP_022984653.1 (cytochrome P450 77A3-like [Cucurbita maxima])

HSP 1 Score: 62.4 bits (150), Expect = 4.6e-07
Identity = 30/43 (69.77%), Postives = 32/43 (74.42%), Query Frame = 0


Query: 3   GGNSLTTDKELVTLCSEFLNSGTDTTETVIEWGMVESIANKEV 46
           GG +  TD+ELVTLCSEFLN GTDTT T IEWGM E I N  V
Sbjct: 290 GGRAAATDEELVTLCSEFLNGGTDTTATAIEWGMAELIENPGV 332

[Close]

BLAST of MELO3C030658.2 vs. NCBI nr
Match: XP_023546857.1 (cytochrome P450 77A3-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 62.4 bits (150), Expect = 4.6e-07
Identity = 30/43 (69.77%), Postives = 32/43 (74.42%), Query Frame = 0


Query: 3   GGNSLTTDKELVTLCSEFLNSGTDTTETVIEWGMVESIANKEV 46
           GG +  TD+ELVTLCSEFLN GTDTT T IEWGM E I N  V
Sbjct: 290 GGRAAATDEELVTLCSEFLNGGTDTTATAIEWGMAELIENPGV 332

[Close]

BLAST of MELO3C030658.2 vs. TAIR10
Match: AT3G10560.1 (Cytochrome P450 superfamily protein)

HSP 1 Score: 57.8 bits (138), Expect = 2.0e-09
Identity = 26/43 (60.47%), Postives = 33/43 (76.74%), Query Frame = 0


Query: 3   GGNSLTTDKELVTLCSEFLNSGTDTTETVIEWGMVESIANKEV 46
           G  +  +D++LVTLCSEFLN+GTDTT   IEWG+ E IAN E+
Sbjct: 296 GSETTPSDEDLVTLCSEFLNAGTDTTGAAIEWGIAELIANPEI 338

[Close]

BLAST of MELO3C030658.2 vs. TAIR10
Match: AT5G04660.1 (cytochrome P450, family 77, subfamily A, polypeptide 4)

HSP 1 Score: 56.6 bits (135), Expect = 4.5e-09
Identity = 26/43 (60.47%), Postives = 33/43 (76.74%), Query Frame = 0


Query: 3   GGNSLTTDKELVTLCSEFLNSGTDTTETVIEWGMVESIANKEV 46
           G  +  +++ELVTLCSEFLN GTDTT T IEWG+ + IAN E+
Sbjct: 294 GRKTTPSNEELVTLCSEFLNGGTDTTGTAIEWGIAQLIANPEI 336

[Close]

BLAST of MELO3C030658.2 vs. TAIR10
Match: AT5G04630.1 (cytochrome P450, family 77, subfamily A, polypeptide 9)

HSP 1 Score: 55.8 bits (133), Expect = 7.8e-09
Identity = 25/43 (58.14%), Postives = 34/43 (79.07%), Query Frame = 0


Query: 3   GGNSLTTDKELVTLCSEFLNSGTDTTETVIEWGMVESIANKEV 46
           G  +  +D++LVTLCSEFLN+GTDTT T IEWG+ E I+N ++
Sbjct: 291 GRETSPSDEDLVTLCSEFLNAGTDTTGTAIEWGIAELISNPKI 333

[Close]

BLAST of MELO3C030658.2 vs. TAIR10
Match: AT3G10570.1 (cytochrome P450, family 77, subfamily A, polypeptide 6)

HSP 1 Score: 53.1 bits (126), Expect = 5.0e-08
Identity = 23/37 (62.16%), Postives = 30/37 (81.08%), Query Frame = 0


Query: 9   TDKELVTLCSEFLNSGTDTTETVIEWGMVESIANKEV 46
           +++ELV+LCSEFLN GTDTT T IEWG+ + I N E+
Sbjct: 302 SNEELVSLCSEFLNGGTDTTGTAIEWGIAQLIVNPEI 338

[Close]

BLAST of MELO3C030658.2 vs. TAIR10
Match: AT1G64940.1 (cytochrome P450, family 87, subfamily A, polypeptide 6)

HSP 1 Score: 47.0 bits (110), Expect = 3.6e-06
Identity = 19/36 (52.78%), Postives = 27/36 (75.00%), Query Frame = 0


Query: 10  DKELVTLCSEFLNSGTDTTETVIEWGMVESIANKEV 46
           + E+V+LCSEFLN+GTDTT T ++W M   + N E+
Sbjct: 300 EDEIVSLCSEFLNAGTDTTATALQWIMANLVKNPEI 335

[Close]

BLAST of MELO3C030658.2 vs. Swiss-Prot
Match: sp|Q9LZ31|C77A4_ARATH (Cytochrome P450 77A4 OS=Arabidopsis thaliana OX=3702 GN=CYP77A4 PE=2 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 8.2e-08
Identity = 26/43 (60.47%), Postives = 33/43 (76.74%), Query Frame = 0


Query: 3   GGNSLTTDKELVTLCSEFLNSGTDTTETVIEWGMVESIANKEV 46
           G  +  +++ELVTLCSEFLN GTDTT T IEWG+ + IAN E+
Sbjct: 294 GRKTTPSNEELVTLCSEFLNGGTDTTGTAIEWGIAQLIANPEI 336

[Close]

BLAST of MELO3C030658.2 vs. Swiss-Prot
Match: sp|O48928|C77A3_SOYBN (Cytochrome P450 77A3 OS=Glycine max OX=3847 GN=CYP77A3 PE=2 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 1.4e-07
Identity = 26/43 (60.47%), Postives = 31/43 (72.09%), Query Frame = 0


Query: 3   GGNSLTTDKELVTLCSEFLNSGTDTTETVIEWGMVESIANKEV 46
           G  S  +D ELV+LCSEFLN GTDTT T +EWG+ + IAN  V
Sbjct: 290 GKKSAPSDAELVSLCSEFLNGGTDTTATAVEWGIAQLIANPNV 332

[Close]

BLAST of MELO3C030658.2 vs. Swiss-Prot
Match: sp|P37124|C77A2_SOLME (Cytochrome P450 77A2 OS=Solanum melongena OX=4111 GN=CYP77A2 PE=2 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 2.6e-06
Identity = 26/43 (60.47%), Postives = 28/43 (65.12%), Query Frame = 0


Query: 3   GGNSLTTDKELVTLCSEFLNSGTDTTETVIEWGMVESIANKEV 46
           G NS  T  ELVTLCSEFLN GTDTT T IEW +   I N  +
Sbjct: 295 GRNSTPTYPELVTLCSEFLNGGTDTTATAIEWAIGRLIENPNI 337

[Close]

BLAST of MELO3C030658.2 vs. Swiss-Prot
Match: sp|P37123|C77A1_SOLME (Cytochrome P450 77A1 (Fragment) OS=Solanum melongena OX=4111 GN=CYP77A1 PE=2 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 1.0e-05
Identity = 24/43 (55.81%), Postives = 29/43 (67.44%), Query Frame = 0


Query: 3   GGNSLTTDKELVTLCSEFLNSGTDTTETVIEWGMVESIANKEV 46
           G  S  T+ ELVTLCSEFLN GTDTT T +EWG+   + N  +
Sbjct: 282 GRKSGPTNAELVTLCSEFLNGGTDTTATALEWGIGRLMENPTI 324

[Close]

BLAST of MELO3C030658.2 vs. TrEMBL
Match: tr|A0A1S3BGP7|A0A1S3BGP7_CUCME (LOW QUALITY PROTEIN: cytochrome P450 77A3-like OS=Cucumis melo OX=3656 GN=LOC103489405 PE=3 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 2.2e-10
Identity = 34/44 (77.27%), Postives = 38/44 (86.36%), Query Frame = 0


Query: 2   GGGNSLTTDKELVTLCSEFLNSGTDTTETVIEWGMVESIANKEV 46
           GGGNS  T++ELVTLCSEFLN GTDTT TVIEWGM E IAN+E+
Sbjct: 285 GGGNSSATEEELVTLCSEFLNGGTDTTATVIEWGMAELIANEEI 328

[Close]

BLAST of MELO3C030658.2 vs. TrEMBL
Match: tr|A0A0A0KWN5|A0A0A0KWN5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G615280 PE=3 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 5.5e-09
Identity = 33/45 (73.33%), Postives = 37/45 (82.22%), Query Frame = 0


Query: 1   GGGGNSLTTDKELVTLCSEFLNSGTDTTETVIEWGMVESIANKEV 46
           G G +S  TD+ELVTLCSEFLN GTDTT TVIEWGM E IAN+E+
Sbjct: 285 GEGKSSSATDEELVTLCSEFLNGGTDTTATVIEWGMAELIANEEI 329

[Close]

BLAST of MELO3C030658.2 vs. TrEMBL
Match: tr|A0A2I4HB86|A0A2I4HB86_9ROSI (cytochrome P450 77A3-like OS=Juglans regia OX=51240 GN=LOC109015403 PE=3 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 8.8e-07
Identity = 30/43 (69.77%), Postives = 32/43 (74.42%), Query Frame = 0


Query: 3   GGNSLTTDKELVTLCSEFLNSGTDTTETVIEWGMVESIANKEV 46
           G  S  TD ELVTLCSEFLN GTDTT T IEWG+ + IAN EV
Sbjct: 325 GRKSSPTDAELVTLCSEFLNGGTDTTATAIEWGIAQLIANPEV 367

[Close]

BLAST of MELO3C030658.2 vs. TrEMBL
Match: tr|W9S4G3|W9S4G3_9ROSA (Cytochrome P450 77A3 OS=Morus notabilis OX=981085 GN=L484_016787 PE=3 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 3.3e-06
Identity = 28/43 (65.12%), Postives = 33/43 (76.74%), Query Frame = 0


Query: 3   GGNSLTTDKELVTLCSEFLNSGTDTTETVIEWGMVESIANKEV 46
           G +S+ T  ELVTLCSEFLN GTDTT T +EWG+ + IAN EV
Sbjct: 286 GRSSVPTKDELVTLCSEFLNGGTDTTGTAVEWGIAQLIANPEV 328

[Close]

BLAST of MELO3C030658.2 vs. TrEMBL
Match: tr|A0A1Q3BMP2|A0A1Q3BMP2_CEPFO (p450 domain-containing protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_12808 PE=3 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 4.4e-06
Identity = 27/43 (62.79%), Postives = 32/43 (74.42%), Query Frame = 0


Query: 3   GGNSLTTDKELVTLCSEFLNSGTDTTETVIEWGMVESIANKEV 46
           G  S  +D+ELVTLCSEFLN GTDTT T IEWG+ + I N E+
Sbjct: 212 GRKSAPSDEELVTLCSEFLNGGTDTTATAIEWGIAQLITNPEI 254

The following BLAST results are available for this feature:

BLAST of MELO3C030658.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008446777.2	3.4e-10	77.27	PREDICTED: LOW QUALITY PROTEIN: cytochrome P450 77A3-like [Cucumis melo]	[more]
XP_011655840.1	8.3e-09	73.33	PREDICTED: cytochrome P450 77A3-like [Cucumis sativus] >KGN52206.1 hypothetical ...	[more]
XP_022957595.1	4.6e-07	69.77	cytochrome P450 77A3-like [Cucurbita moschata]	[more]
XP_022984653.1	4.6e-07	69.77	cytochrome P450 77A3-like [Cucurbita maxima]	[more]
XP_023546857.1	4.6e-07	69.77	cytochrome P450 77A3-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of MELO3C030658.2 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G10560.1	2.0e-09	60.47	Cytochrome P450 superfamily protein	[more]
AT5G04660.1	4.5e-09	60.47	cytochrome P450, family 77, subfamily A, polypeptide 4	[more]
AT5G04630.1	7.8e-09	58.14	cytochrome P450, family 77, subfamily A, polypeptide 9	[more]
AT3G10570.1	5.0e-08	62.16	cytochrome P450, family 77, subfamily A, polypeptide 6	[more]
AT1G64940.1	3.6e-06	52.78	cytochrome P450, family 87, subfamily A, polypeptide 6	[more]

BLAST of MELO3C030658.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9LZ31\|C77A4_ARATH	8.2e-08	60.47	Cytochrome P450 77A4 OS=Arabidopsis thaliana OX=3702 GN=CYP77A4 PE=2 SV=1	[more]
sp\|O48928\|C77A3_SOYBN	1.4e-07	60.47	Cytochrome P450 77A3 OS=Glycine max OX=3847 GN=CYP77A3 PE=2 SV=1	[more]
sp\|P37124\|C77A2_SOLME	2.6e-06	60.47	Cytochrome P450 77A2 OS=Solanum melongena OX=4111 GN=CYP77A2 PE=2 SV=1	[more]
sp\|P37123\|C77A1_SOLME	1.0e-05	55.81	Cytochrome P450 77A1 (Fragment) OS=Solanum melongena OX=4111 GN=CYP77A1 PE=2 SV=...	[more]

BLAST of MELO3C030658.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BGP7\|A0A1S3BGP7_CUCME	2.2e-10	77.27	LOW QUALITY PROTEIN: cytochrome P450 77A3-like OS=Cucumis melo OX=3656 GN=LOC103...	[more]
tr\|A0A0A0KWN5\|A0A0A0KWN5_CUCSA	5.5e-09	73.33	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G615280 PE=3 SV=1	[more]
tr\|A0A2I4HB86\|A0A2I4HB86_9ROSI	8.8e-07	69.77	cytochrome P450 77A3-like OS=Juglans regia OX=51240 GN=LOC109015403 PE=3 SV=1	[more]
tr\|W9S4G3\|W9S4G3_9ROSA	3.3e-06	65.12	Cytochrome P450 77A3 OS=Morus notabilis OX=981085 GN=L484_016787 PE=3 SV=1	[more]
tr\|A0A1Q3BMP2\|A0A1Q3BMP2_CEPFO	4.4e-06	62.79	p450 domain-containing protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_128...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0016705	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0005506	iron ion binding
GO:0020037	heme binding

Vocabulary: **Biological Process**
Term	Definition
GO:0055114	oxidation-reduction process

Vocabulary: **INTERPRO**
Term	Definition
IPR036396	Cyt_P450_sf

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0055114	oxidation-reduction process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0020037	heme binding
molecular_function	GO:0005506	iron ion binding
molecular_function	GO:0016705	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C030658.2.1	MELO3C030658.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036396	Cytochrome P450 superfamily	GENE3D	G3DSA:1.10.630.10		coord: 2..45 e-value: 2.4E-5 score: 25.3
IPR036396	Cytochrome P450 superfamily	SUPERFAMILY	SSF48264	Cytochrome P450	coord: 6..44
None	No IPR available	PANTHER	PTHR24298	FAMILY NOT NAMED	coord: 3..45
None	No IPR available	PANTHER	PTHR24298:SF47	CYTOCHROME P450 77A4-RELATED	coord: 3..45

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C030658.2	Cucumber (Chinese Long) v3	cucmedB217
MELO3C030658.2	Cucumber (Chinese Long) v3	cucmedB556
MELO3C030658.2	Watermelon (97103) v2	medwmbB305
MELO3C030658.2	Watermelon (97103) v2	medwmbB357
MELO3C030658.2	Wax gourd	medwgoB391
MELO3C030658.2	Wax gourd	medwgoB443
MELO3C030658.2	Cucumber (Gy14) v2	cgybmedB191
MELO3C030658.2	Cucumber (Gy14) v2	cgybmedB485
MELO3C030658.2	Cucumber (Gy14) v1	cgymedB343
MELO3C030658.2	Cucurbita maxima (Rimu)	cmamedB257
MELO3C030658.2	Cucurbita maxima (Rimu)	cmamedB387
MELO3C030658.2	Cucurbita maxima (Rimu)	cmamedB489
MELO3C030658.2	Cucurbita maxima (Rimu)	cmamedB943
MELO3C030658.2	Cucurbita moschata (Rifu)	cmomedB239
MELO3C030658.2	Cucurbita moschata (Rifu)	cmomedB476
MELO3C030658.2	Cucurbita moschata (Rifu)	cmomedB932
MELO3C030658.2	Cucurbita pepo (Zucchini)	cpemedB360
MELO3C030658.2	Cucurbita pepo (Zucchini)	cpemedB615
MELO3C030658.2	Cucurbita pepo (Zucchini)	cpemedB673
MELO3C030658.2	Wild cucumber (PI 183967)	cpimedB215
MELO3C030658.2	Wild cucumber (PI 183967)	cpimedB544
MELO3C030658.2	Cucumber (Chinese Long) v2	cumedB215
MELO3C030658.2	Cucumber (Chinese Long) v2	cumedB528
MELO3C030658.2	Melon (DHL92) v3.6.1	medmedB084
MELO3C030658.2	Bottle gourd (USVL1VR-Ls)	lsimedB221
MELO3C030658.2	Bottle gourd (USVL1VR-Ls)	lsimedB273
MELO3C030658.2	Watermelon (Charleston Gray)	medwcgB308
MELO3C030658.2	Watermelon (Charleston Gray)	medwcgB309
MELO3C030658.2	Watermelon (97103) v1	medwmB343
MELO3C030658.2	Watermelon (97103) v1	medwmB344
MELO3C030658.2	Silver-seed gourd	carmedB0460