MELO3C028698.2 (gene) Melon (DHL92) v3.6.1

Overview
NameMELO3C028698.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionPeptide transporter
Locationchr01 : 14456196 .. 14456330 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCACAACTGGAGGAGAAAGACTCGGAAAATGGAAGAGATGATTATACGGAAGATGGAACTGTGAGTCTCAAAGGTTTACCTGTCTTAAGATCAAAGACTGGGAGATGGGGAGCCTGTTCCTTCCTTGTTGCT

mRNA sequence

ATGGCACAACTGGAGGAGAAAGACTCGGAAAATGGAAGAGATGATTATACGGAAGATGGAACTGTGAGTCTCAAAGGTTTACCTGTCTTAAGATCAAAGACTGGGAGATGGGGAGCCTGTTCCTTCCTTGTTGCT

Coding sequence (CDS)

ATGGCACAACTGGAGGAGAAAGACTCGGAAAATGGAAGAGATGATTATACGGAAGATGGAACTGTGAGTCTCAAAGGTTTACCTGTCTTAAGATCAAAGACTGGGAGATGGGGAGCCTGTTCCTTCCTTGTTGCT

Protein sequence

MAQLEEKDSENGRDDYTEDGTVSLKGLPVLRSKTGRWGACSFLVA
Homology
[Close]
BLAST of MELO3C028698.2 vs. NCBI nr
Match: XP_004152059.1 (PREDICTED: protein NRT1/ PTR FAMILY 5.2-like [Cucumis sativus] >KGN58287.1 hypothetical protein Csa_3G608170 [Cucumis sativus])

HSP 1 Score: 84.7 bits (208), Expect = 8.6e-14
Identity = 40/45 (88.89%), Postives = 42/45 (93.33%), Query Frame = 0 

Query: 1  MAQLEEKDSENGRDDYTEDGTVSLKGLPVLRSKTGRWGACSFLVA 46
          MAQ+ EK SENGRDDYTEDGTVSLKGLPVLRSKTGRW ACSF+VA
Sbjct: 1  MAQVGEKGSENGRDDYTEDGTVSLKGLPVLRSKTGRWRACSFIVA 45

[Close]
BLAST of MELO3C028698.2 vs. NCBI nr
Match: XP_008447390.2 (PREDICTED: LOW QUALITY PROTEIN: protein NRT1/ PTR FAMILY 5.2-like [Cucumis melo])

HSP 1 Score: 84.7 bits (208), Expect = 8.6e-14
Identity = 40/45 (88.89%), Postives = 42/45 (93.33%), Query Frame = 0 

Query: 1  MAQLEEKDSENGRDDYTEDGTVSLKGLPVLRSKTGRWGACSFLVA 46
          MAQ+EEK SENGRDDYTEDGTVSLKGLPVLRSKTG W ACSF+VA
Sbjct: 1  MAQVEEKGSENGRDDYTEDGTVSLKGLPVLRSKTGGWRACSFIVA 45

[Close]
BLAST of MELO3C028698.2 vs. NCBI nr
Match: XP_022931104.1 (protein NRT1/ PTR FAMILY 5.2-like [Cucurbita moschata])

HSP 1 Score: 77.0 bits (188), Expect = 1.8e-11
Identity = 35/44 (79.55%), Postives = 40/44 (90.91%), Query Frame = 0 

Query: 1  MAQLEEKDSENGRDDYTEDGTVSLKGLPVLRSKTGRWGACSFLV 45
          MAQ+EEK S +GRDDYT+DGTVSLKG P+LRSKTGRW ACSF+V
Sbjct: 19 MAQVEEKGSADGRDDYTQDGTVSLKGDPILRSKTGRWRACSFIV 62

[Close]
BLAST of MELO3C028698.2 vs. NCBI nr
Match: XP_022996421.1 (protein NRT1/ PTR FAMILY 5.2-like [Cucurbita maxima])

HSP 1 Score: 77.0 bits (188), Expect = 1.8e-11
Identity = 35/44 (79.55%), Postives = 40/44 (90.91%), Query Frame = 0 

Query: 1  MAQLEEKDSENGRDDYTEDGTVSLKGLPVLRSKTGRWGACSFLV 45
          MAQ+EEK S +GRDDYT+DGTVSLKG P+LRSKTGRW ACSF+V
Sbjct: 19 MAQVEEKGSADGRDDYTQDGTVSLKGDPILRSKTGRWRACSFIV 62

[Close]
BLAST of MELO3C028698.2 vs. NCBI nr
Match: XP_023532745.1 (protein NRT1/ PTR FAMILY 5.2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 75.5 bits (184), Expect = 5.2e-11
Identity = 34/44 (77.27%), Postives = 39/44 (88.64%), Query Frame = 0 

Query: 1  MAQLEEKDSENGRDDYTEDGTVSLKGLPVLRSKTGRWGACSFLV 45
          MAQ+EEK S +GRDDYT+DGTVSLKG P+ RSKTGRW ACSF+V
Sbjct: 1  MAQVEEKGSADGRDDYTQDGTVSLKGDPIFRSKTGRWRACSFIV 44

[Close]
BLAST of MELO3C028698.2 vs. TAIR10
Match: AT2G40460.1 (Major facilitator superfamily protein)

HSP 1 Score: 52.0 bits (123), Expect = 1.1e-07
Identity = 22/29 (75.86%), Postives = 25/29 (86.21%), Query Frame = 0 

Query: 16 YTEDGTVSLKGLPVLRSKTGRWGACSFLV 45
          YT+DGTV L+G PVL SKTGRW ACSFL+
Sbjct: 7  YTQDGTVDLQGRPVLASKTGRWRACSFLL 35

[Close]
BLAST of MELO3C028698.2 vs. TAIR10
Match: AT5G46040.1 (Major facilitator superfamily protein)

HSP 1 Score: 50.4 bits (119), Expect = 3.3e-07
Identity = 22/31 (70.97%), Postives = 26/31 (83.87%), Query Frame = 0 

Query: 14 DDYTEDGTVSLKGLPVLRSKTGRWGACSFLV 45
          DDYT+DGTV L+G  V RS+TGRW ACSF+V
Sbjct: 8  DDYTKDGTVDLRGNRVRRSQTGRWKACSFVV 38

[Close]
BLAST of MELO3C028698.2 vs. TAIR10
Match: AT5G46050.1 (peptide transporter 3)

HSP 1 Score: 49.7 bits (117), Expect = 5.6e-07
Identity = 22/31 (70.97%), Postives = 25/31 (80.65%), Query Frame = 0 

Query: 14 DDYTEDGTVSLKGLPVLRSKTGRWGACSFLV 45
          DDYT+DGTV L+G PV RS  GRW ACSF+V
Sbjct: 8  DDYTKDGTVDLQGNPVRRSIRGRWKACSFVV 38

[Close]
BLAST of MELO3C028698.2 vs. TAIR10
Match: AT2G02040.1 (peptide transporter 2)

HSP 1 Score: 40.0 bits (92), Expect = 4.4e-04
Identity = 15/29 (51.72%), Postives = 19/29 (65.52%), Query Frame = 0 

Query: 16 YTEDGTVSLKGLPVLRSKTGRWGACSFLV 45
          Y EDG+V   G P L+ KTG W AC F++
Sbjct: 24 YAEDGSVDFNGNPPLKEKTGNWKACPFIL 52

[Close]
BLAST of MELO3C028698.2 vs. Swiss-Prot
Match: sp|Q8VZR7|PTR30_ARATH (Protein NRT1/ PTR FAMILY 5.1 OS=Arabidopsis thaliana OX=3702 GN=NPF5.1 PE=2 SV=2)

HSP 1 Score: 52.0 bits (123), Expect = 2.0e-06
Identity = 22/29 (75.86%), Postives = 25/29 (86.21%), Query Frame = 0 

Query: 16 YTEDGTVSLKGLPVLRSKTGRWGACSFLV 45
          YT+DGTV L+G PVL SKTGRW ACSFL+
Sbjct: 7  YTQDGTVDLQGRPVLASKTGRWRACSFLL 35

[Close]
BLAST of MELO3C028698.2 vs. Swiss-Prot
Match: sp|Q9FNL8|PTR4_ARATH (Protein NRT1/ PTR FAMILY 5.3 OS=Arabidopsis thaliana OX=3702 GN=NPF5.3 PE=2 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 5.9e-06
Identity = 22/31 (70.97%), Postives = 26/31 (83.87%), Query Frame = 0 

Query: 14 DDYTEDGTVSLKGLPVLRSKTGRWGACSFLV 45
          DDYT+DGTV L+G  V RS+TGRW ACSF+V
Sbjct: 8  DDYTKDGTVDLRGNRVRRSQTGRWKACSFVV 38

[Close]
BLAST of MELO3C028698.2 vs. Swiss-Prot
Match: sp|Q9FNL7|PTR3_ARATH (Protein NRT1/ PTR FAMILY 5.2 OS=Arabidopsis thaliana OX=3702 GN=NPF5.2 PE=2 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 1.0e-05
Identity = 22/31 (70.97%), Postives = 25/31 (80.65%), Query Frame = 0 

Query: 14 DDYTEDGTVSLKGLPVLRSKTGRWGACSFLV 45
          DDYT+DGTV L+G PV RS  GRW ACSF+V
Sbjct: 8  DDYTKDGTVDLQGNPVRRSIRGRWKACSFVV 38

[Close]
BLAST of MELO3C028698.2 vs. TrEMBL
Match: tr|A0A1S3BHC2|A0A1S3BHC2_CUCME (LOW QUALITY PROTEIN: protein NRT1/ PTR FAMILY 5.2-like OS=Cucumis melo OX=3656 GN=LOC103489849 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 5.7e-14
Identity = 40/45 (88.89%), Postives = 42/45 (93.33%), Query Frame = 0 

Query: 1  MAQLEEKDSENGRDDYTEDGTVSLKGLPVLRSKTGRWGACSFLVA 46
          MAQ+EEK SENGRDDYTEDGTVSLKGLPVLRSKTG W ACSF+VA
Sbjct: 1  MAQVEEKGSENGRDDYTEDGTVSLKGLPVLRSKTGGWRACSFIVA 45

[Close]
BLAST of MELO3C028698.2 vs. TrEMBL
Match: tr|A0A0A0LC54|A0A0A0LC54_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G608170 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 5.7e-14
Identity = 40/45 (88.89%), Postives = 42/45 (93.33%), Query Frame = 0 

Query: 1  MAQLEEKDSENGRDDYTEDGTVSLKGLPVLRSKTGRWGACSFLVA 46
          MAQ+ EK SENGRDDYTEDGTVSLKGLPVLRSKTGRW ACSF+VA
Sbjct: 1  MAQVGEKGSENGRDDYTEDGTVSLKGLPVLRSKTGRWRACSFIVA 45

[Close]
BLAST of MELO3C028698.2 vs. TrEMBL
Match: tr|A0A061DPK9|A0A061DPK9_THECC (Peptide transporter PTR3-A OS=Theobroma cacao OX=3641 GN=TCM_003950 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 2.2e-10
Identity = 33/44 (75.00%), Postives = 39/44 (88.64%), Query Frame = 0 

Query: 1  MAQLEEKDSENGRDDYTEDGTVSLKGLPVLRSKTGRWGACSFLV 45
          MA++EEK S +GRDDYTEDG+V LKG PVLRS+TGRW ACSF+V
Sbjct: 54 MAKVEEKGSVDGRDDYTEDGSVDLKGRPVLRSETGRWKACSFIV 97

[Close]
BLAST of MELO3C028698.2 vs. TrEMBL
Match: tr|G7KWE3|G7KWE3_MEDTR (Peptide transporter OS=Medicago truncatula OX=3880 GN=11425206 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 5.0e-10
Identity = 31/44 (70.45%), Postives = 37/44 (84.09%), Query Frame = 0 

Query: 1  MAQLEEKDSENGRDDYTEDGTVSLKGLPVLRSKTGRWGACSFLV 45
          M  +EEK S NG++DYT+DGTV LKG P+LRSKTGRW ACSF+V
Sbjct: 2  MEMVEEKGSANGKEDYTQDGTVDLKGRPILRSKTGRWKACSFIV 45

[Close]
BLAST of MELO3C028698.2 vs. TrEMBL
Match: tr|A0A2K3L7H5|A0A2K3L7H5_TRIPR (Peptide transporter PTR3-a-like protein (Fragment) OS=Trifolium pratense OX=57577 GN=L195_g030402 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 5.0e-10
Identity = 31/44 (70.45%), Postives = 37/44 (84.09%), Query Frame = 0 

Query: 1  MAQLEEKDSENGRDDYTEDGTVSLKGLPVLRSKTGRWGACSFLV 45
          M  +EEK S NG++DYT+DGTV LKG P+LRSKTGRW ACSF+V
Sbjct: 1  MVMVEEKGSANGQEDYTQDGTVDLKGRPILRSKTGRWKACSFIV 44

The following BLAST results are available for this feature:
BLAST of MELO3C028698.2 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004152059.18.6e-1488.89PREDICTED: protein NRT1/ PTR FAMILY 5.2-like [Cucumis sativus] >KGN58287.1 hypot... [more]
XP_008447390.28.6e-1488.89PREDICTED: LOW QUALITY PROTEIN: protein NRT1/ PTR FAMILY 5.2-like [Cucumis melo][more]
XP_022931104.11.8e-1179.55protein NRT1/ PTR FAMILY 5.2-like [Cucurbita moschata][more]
XP_022996421.11.8e-1179.55protein NRT1/ PTR FAMILY 5.2-like [Cucurbita maxima][more]
XP_023532745.15.2e-1177.27protein NRT1/ PTR FAMILY 5.2-like [Cucurbita pepo subsp. pepo][more]
BLAST of MELO3C028698.2 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G40460.11.1e-0775.86Major facilitator superfamily protein[more]
AT5G46040.13.3e-0770.97Major facilitator superfamily protein[more]
AT5G46050.15.6e-0770.97peptide transporter 3[more]
AT2G02040.14.4e-0451.72peptide transporter 2[more]
BLAST of MELO3C028698.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q8VZR7|PTR30_ARATH2.0e-0675.86Protein NRT1/ PTR FAMILY 5.1 OS=Arabidopsis thaliana OX=3702 GN=NPF5.1 PE=2 SV=2[more]
sp|Q9FNL8|PTR4_ARATH5.9e-0670.97Protein NRT1/ PTR FAMILY 5.3 OS=Arabidopsis thaliana OX=3702 GN=NPF5.3 PE=2 SV=1[more]
sp|Q9FNL7|PTR3_ARATH1.0e-0570.97Protein NRT1/ PTR FAMILY 5.2 OS=Arabidopsis thaliana OX=3702 GN=NPF5.2 PE=2 SV=1[more]
BLAST of MELO3C028698.2 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3BHC2|A0A1S3BHC2_CUCME5.7e-1488.89LOW QUALITY PROTEIN: protein NRT1/ PTR FAMILY 5.2-like OS=Cucumis melo OX=3656 G... [more]
tr|A0A0A0LC54|A0A0A0LC54_CUCSA5.7e-1488.89Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G608170 PE=4 SV=1[more]
tr|A0A061DPK9|A0A061DPK9_THECC2.2e-1075.00Peptide transporter PTR3-A OS=Theobroma cacao OX=3641 GN=TCM_003950 PE=4 SV=1[more]
tr|G7KWE3|G7KWE3_MEDTR5.0e-1070.45Peptide transporter OS=Medicago truncatula OX=3880 GN=11425206 PE=4 SV=1[more]
tr|A0A2K3L7H5|A0A2K3L7H5_TRIPR5.0e-1070.45Peptide transporter PTR3-a-like protein (Fragment) OS=Trifolium pratense OX=5757... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0022857transmembrane transporter activity
Vocabulary: Biological Process
TermDefinition
GO:0055085transmembrane transport
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR000109POT_fam
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006810 transport
biological_process GO:0055085 transmembrane transport
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0016020 membrane
molecular_function GO:0005215 transporter activity
molecular_function GO:0022857 transmembrane transporter activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C028698.2.1MELO3C028698.2.1mRNA


InterPro
Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..20
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..21
NoneNo IPR availablePANTHERPTHR11654:SF287SUBFAMILY NOT NAMEDcoord: 3..44
IPR000109Proton-dependent oligopeptide transporter familyPANTHERPTHR11654OLIGOPEPTIDE TRANSPORTER-RELATEDcoord: 3..44

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C028698.2Silver-seed gourdcarmedB0076
MELO3C028698.2Silver-seed gourdcarmedB0442
MELO3C028698.2Cucumber (Chinese Long) v3cucmedB540
MELO3C028698.2Watermelon (97103) v2medwmbB197
MELO3C028698.2Wax gourdmedwgoB243
MELO3C028698.2Cucumber (Gy14) v2cgybmedB469
MELO3C028698.2Cucurbita maxima (Rimu)cmamedB015
MELO3C028698.2Cucurbita maxima (Rimu)cmamedB463
MELO3C028698.2Cucurbita moschata (Rifu)cmomedB003
MELO3C028698.2Cucurbita moschata (Rifu)cmomedB451
MELO3C028698.2Cucurbita pepo (Zucchini)cpemedB591
MELO3C028698.2Cucurbita pepo (Zucchini)cpemedB844
MELO3C028698.2Wild cucumber (PI 183967)cpimedB527
MELO3C028698.2Cucumber (Chinese Long) v2cumedB513
MELO3C028698.2Bottle gourd (USVL1VR-Ls)lsimedB203
MELO3C028698.2Watermelon (Charleston Gray)medwcgB158
MELO3C028698.2Watermelon (97103) v1medwmB184