MELO3C026895 (gene) Melon (DHL92) v3.5.1

NameMELO3C026895
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionCCR4-NOT transcription complex subunit 3
Locationchr4 : 25499173 .. 25499568 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTGCGAGTCGAAAGCTCCAAGGGGAAATTGACCGAGTTCTCAAGAAGGTCCAAGAAGGGGTTGACGTCTTTGACAGCATTTGGAACAAGGTTCATTTCCCCATCCACTCACTCGCTTCCGAGAATGTGAGCTTTTCCTGTAAATTTTGAGTTGGGTCTTAACTTTTTTCTTGTTTGTCTCGTTTCTAGGTTTATGATACCGACAATTCCAATCAGAAGGAGAAATTTGAGGCGGACTTGAAGAAGGAGATAAAGAAGCTTCAGAGATACAGGGACCAAATCAAGACATGGATTCAGTCCAGTGAGATTAAGGATAAGAAGGTTTTTTCCTATTTTGCATCTTTATGCTCTCAAAGTTACTGTGGTTTCTGTGAACTTTCAATGGCACATTGA

mRNA sequence

ATGGGTGCGAGTCGAAAGCTCCAAGGGGAAATTGACCGAGTTCTCAAGAAGGTCCAAGAAGGGGTTGACGTCTTTGACAGCATTTGGAACAAGGTTTATGATACCGACAATTCCAATCAGAAGGAGAAATTTGAGGCGGACTTGAAGAAGGAGATAAAGAAGCTTCAGAGATACAGGGACCAAATCAAGACATGGATTCAGTCCAGTGAGATTAAGGATAAGAAGGTTTTTTCCTATTTTGCATCTTTATGCTCTCAAAGTTACTGTGGTTTCTGTGAACTTTCAATGGCACATTGA

Coding sequence (CDS)

ATGGGTGCGAGTCGAAAGCTCCAAGGGGAAATTGACCGAGTTCTCAAGAAGGTCCAAGAAGGGGTTGACGTCTTTGACAGCATTTGGAACAAGGTTTATGATACCGACAATTCCAATCAGAAGGAGAAATTTGAGGCGGACTTGAAGAAGGAGATAAAGAAGCTTCAGAGATACAGGGACCAAATCAAGACATGGATTCAGTCCAGTGAGATTAAGGATAAGAAGGTTTTTTCCTATTTTGCATCTTTATGCTCTCAAAGTTACTGTGGTTTCTGTGAACTTTCAATGGCACATTGA

Protein sequence

MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNSNQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKVFSYFASLCSQSYCGFCELSMAH*
BLAST of MELO3C026895 vs. Swiss-Prot
Match: CNOT3_HUMAN (CCR4-NOT transcription complex subunit 3 OS=Homo sapiens GN=CNOT3 PE=1 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 1.6e-24
Identity = 53/75 (70.67%), Postives = 61/75 (81.33%), Query Frame = 1

Query: 1  MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNSNQKEKFEADLKKEIKKLQRYRD 60
          M   RKLQGEIDR LKKV EGV+ F+ IW K+++  N+NQKEK+EADLKKEIKKLQR RD
Sbjct: 1  MADKRKLQGEIDRCLKKVSEGVEQFEDIWQKLHNAANANQKEKYEADLKKEIKKLQRLRD 60

Query: 61 QIKTWIQSSEIKDKK 76
          QIKTW+ S+EIKDK+
Sbjct: 61 QIKTWVASNEIKDKR 75

BLAST of MELO3C026895 vs. Swiss-Prot
Match: CNOT3_MOUSE (CCR4-NOT transcription complex subunit 3 OS=Mus musculus GN=Cnot3 PE=1 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 1.6e-24
Identity = 53/75 (70.67%), Postives = 61/75 (81.33%), Query Frame = 1

Query: 1  MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNSNQKEKFEADLKKEIKKLQRYRD 60
          M   RKLQGEIDR LKKV EGV+ F+ IW K+++  N+NQKEK+EADLKKEIKKLQR RD
Sbjct: 1  MADKRKLQGEIDRCLKKVSEGVEQFEDIWQKLHNAANANQKEKYEADLKKEIKKLQRLRD 60

Query: 61 QIKTWIQSSEIKDKK 76
          QIKTW+ S+EIKDK+
Sbjct: 61 QIKTWVASNEIKDKR 75

BLAST of MELO3C026895 vs. Swiss-Prot
Match: NOT5_YEAST (General negative regulator of transcription subunit 5 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NOT5 PE=1 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 3.8e-18
Identity = 42/75 (56.00%), Postives = 58/75 (77.33%), Query Frame = 1

Query: 3  ASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTD--NSNQKEKFEADLKKEIKKLQRYRD 62
          + RKLQ +ID++LKKV+EG++ FD I+ K   TD  NS+ +EK E+DLK+EIKKLQ++RD
Sbjct: 2  SQRKLQQDIDKLLKKVKEGIEDFDDIYEKFQSTDPSNSSHREKLESDLKREIKKLQKHRD 61

Query: 63 QIKTWIQSSEIKDKK 76
          QIKTW+   ++KDK+
Sbjct: 62 QIKTWLSKEDVKDKQ 76

BLAST of MELO3C026895 vs. Swiss-Prot
Match: NOT3_SCHPO (General negative regulator of transcription subunit 3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=not3 PE=1 SV=2)

HSP 1 Score: 88.2 bits (217), Expect = 5.5e-17
Identity = 40/73 (54.79%), Postives = 55/73 (75.34%), Query Frame = 1

Query: 3  ASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNSNQKEKFEADLKKEIKKLQRYRDQI 62
          ++RKLQ EI++  KKV +G+ +FD ++ K+  +++ +QKEK E DLK +IKKLQR RDQI
Sbjct: 2  SARKLQVEIEKTFKKVTDGIAIFDEVYEKLSASNSVSQKEKLEGDLKTQIKKLQRLRDQI 61

Query: 63 KTWIQSSEIKDKK 76
          KTW  S++IKDKK
Sbjct: 62 KTWASSNDIKDKK 74

BLAST of MELO3C026895 vs. Swiss-Prot
Match: NOT3_YEAST (General negative regulator of transcription subunit 3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NOT3 PE=1 SV=2)

HSP 1 Score: 84.7 bits (208), Expect = 6.1e-16
Identity = 40/73 (54.79%), Postives = 55/73 (75.34%), Query Frame = 1

Query: 3  ASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYD-TDNSNQKEKFEADLKKEIKKLQRYRDQ 62
          A RKLQ E+DRV KK+ EG+++F+S + +    T+N +QK+K E+DLK+E+KKLQR R+Q
Sbjct: 2  AHRKLQQEVDRVFKKINEGLEIFNSYYERHESCTNNPSQKDKLESDLKREVKKLQRLREQ 61

Query: 63 IKTWIQSSEIKDK 75
          IK+W  S +IKDK
Sbjct: 62 IKSWQSSPDIKDK 74

BLAST of MELO3C026895 vs. TrEMBL
Match: A0A067EVW8_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0026781mg PE=4 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 1.6e-34
Identity = 75/76 (98.68%), Postives = 76/76 (100.00%), Query Frame = 1

Query: 1  MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNSNQKEKFEADLKKEIKKLQRYRD 60
          MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDN+NQKEKFEADLKKEIKKLQRYRD
Sbjct: 1  MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRD 60

Query: 61 QIKTWIQSSEIKDKKV 77
          QIKTWIQSSEIKDKKV
Sbjct: 61 QIKTWIQSSEIKDKKV 76

BLAST of MELO3C026895 vs. TrEMBL
Match: V4TT72_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10018788mg PE=4 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 1.6e-34
Identity = 75/76 (98.68%), Postives = 76/76 (100.00%), Query Frame = 1

Query: 1  MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNSNQKEKFEADLKKEIKKLQRYRD 60
          MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDN+NQKEKFEADLKKEIKKLQRYRD
Sbjct: 1  MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRD 60

Query: 61 QIKTWIQSSEIKDKKV 77
          QIKTWIQSSEIKDKKV
Sbjct: 61 QIKTWIQSSEIKDKKV 76

BLAST of MELO3C026895 vs. TrEMBL
Match: S8CEU2_9LAMI (Uncharacterized protein (Fragment) OS=Genlisea aurea GN=M569_09447 PE=4 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 1.6e-34
Identity = 75/76 (98.68%), Postives = 76/76 (100.00%), Query Frame = 1

Query: 1  MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNSNQKEKFEADLKKEIKKLQRYRD 60
          MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDN+NQKEKFEADLKKEIKKLQRYRD
Sbjct: 1  MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRD 60

Query: 61 QIKTWIQSSEIKDKKV 77
          QIKTWIQSSEIKDKKV
Sbjct: 61 QIKTWIQSSEIKDKKV 76

BLAST of MELO3C026895 vs. TrEMBL
Match: A0A0K9QPM3_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_155610 PE=4 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 1.6e-34
Identity = 75/76 (98.68%), Postives = 76/76 (100.00%), Query Frame = 1

Query: 1  MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNSNQKEKFEADLKKEIKKLQRYRD 60
          MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDN+NQKEKFEADLKKEIKKLQRYRD
Sbjct: 1  MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRD 60

Query: 61 QIKTWIQSSEIKDKKV 77
          QIKTWIQSSEIKDKKV
Sbjct: 61 QIKTWIQSSEIKDKKV 76

BLAST of MELO3C026895 vs. TrEMBL
Match: A0A0K9QRA1_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_155610 PE=4 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 1.6e-34
Identity = 75/76 (98.68%), Postives = 76/76 (100.00%), Query Frame = 1

Query: 1  MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNSNQKEKFEADLKKEIKKLQRYRD 60
          MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDN+NQKEKFEADLKKEIKKLQRYRD
Sbjct: 1  MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRD 60

Query: 61 QIKTWIQSSEIKDKKV 77
          QIKTWIQSSEIKDKKV
Sbjct: 61 QIKTWIQSSEIKDKKV 76

BLAST of MELO3C026895 vs. TAIR10
Match: AT5G18230.2 (AT5G18230.2 transcription regulator NOT2/NOT3/NOT5 family protein)

HSP 1 Score: 147.5 bits (371), Expect = 4.3e-36
Identity = 79/86 (91.86%), Postives = 77/86 (89.53%), Query Frame = 1

Query: 1  MGASRKLQGEIDRVLKKVQEGVDVFDSIWNK--VYDTDNSNQKEKFEADLKKEIKKLQRY 60
          MGASRKLQGEIDRVLKKVQEGVDVFDSIWNK  VYDTDN NQKEKFEADLKKEIKKLQRY
Sbjct: 1  MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKWNVYDTDNVNQKEKFEADLKKEIKKLQRY 60

Query: 61 RDQIKTWIQSSEIKDKKV-FSYFASL 84
          RDQIKTWIQSSEIKDKKV  SY  SL
Sbjct: 61 RDQIKTWIQSSEIKDKKVSASYEQSL 86

BLAST of MELO3C026895 vs. NCBI nr
Match: gi|449446768|ref|XP_004141143.1| (PREDICTED: general negative regulator of transcription subunit 3 [Cucumis sativus])

HSP 1 Score: 154.5 bits (389), Expect = 1.0e-34
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 1

Query: 1  MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNSNQKEKFEADLKKEIKKLQRYRD 60
          MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNSNQKEKFEADLKKEIKKLQRYRD
Sbjct: 1  MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNSNQKEKFEADLKKEIKKLQRYRD 60

Query: 61 QIKTWIQSSEIKDKKV 77
          QIKTWIQSSEIKDKKV
Sbjct: 61 QIKTWIQSSEIKDKKV 76

BLAST of MELO3C026895 vs. NCBI nr
Match: gi|764584810|ref|XP_011464447.1| (PREDICTED: CCR4-NOT transcription complex subunit 3 isoform X2 [Fragaria vesca subsp. vesca])

HSP 1 Score: 154.5 bits (389), Expect = 1.0e-34
Identity = 76/82 (92.68%), Postives = 79/82 (96.34%), Query Frame = 1

Query: 1  MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNSNQKEKFEADLKKEIKKLQRYRD 60
          MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDN+NQKEKFEADLKKEIKKLQRYRD
Sbjct: 1  MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRD 60

Query: 61 QIKTWIQSSEIKDKKVFSYFAS 83
          QIKTWIQSSEIKDKKV + + S
Sbjct: 61 QIKTWIQSSEIKDKKVSASYES 82

BLAST of MELO3C026895 vs. NCBI nr
Match: gi|659130746|ref|XP_008465329.1| (PREDICTED: general negative regulator of transcription subunit 3 [Cucumis melo])

HSP 1 Score: 154.5 bits (389), Expect = 1.0e-34
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 1

Query: 1  MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNSNQKEKFEADLKKEIKKLQRYRD 60
          MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNSNQKEKFEADLKKEIKKLQRYRD
Sbjct: 1  MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNSNQKEKFEADLKKEIKKLQRYRD 60

Query: 61 QIKTWIQSSEIKDKKV 77
          QIKTWIQSSEIKDKKV
Sbjct: 61 QIKTWIQSSEIKDKKV 76

BLAST of MELO3C026895 vs. NCBI nr
Match: gi|764584806|ref|XP_011464446.1| (PREDICTED: general negative regulator of transcription subunit 3 isoform X1 [Fragaria vesca subsp. vesca])

HSP 1 Score: 154.5 bits (389), Expect = 1.0e-34
Identity = 76/82 (92.68%), Postives = 79/82 (96.34%), Query Frame = 1

Query: 1  MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNSNQKEKFEADLKKEIKKLQRYRD 60
          MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDN+NQKEKFEADLKKEIKKLQRYRD
Sbjct: 1  MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRD 60

Query: 61 QIKTWIQSSEIKDKKVFSYFAS 83
          QIKTWIQSSEIKDKKV + + S
Sbjct: 61 QIKTWIQSSEIKDKKVSASYES 82

BLAST of MELO3C026895 vs. NCBI nr
Match: gi|971551656|ref|XP_015164528.1| (PREDICTED: general negative regulator of transcription subunit 3 isoform X3 [Solanum tuberosum])

HSP 1 Score: 153.3 bits (386), Expect = 2.2e-34
Identity = 75/76 (98.68%), Postives = 76/76 (100.00%), Query Frame = 1

Query: 1  MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNSNQKEKFEADLKKEIKKLQRYRD 60
          MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDN+NQKEKFEADLKKEIKKLQRYRD
Sbjct: 1  MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRD 60

Query: 61 QIKTWIQSSEIKDKKV 77
          QIKTWIQSSEIKDKKV
Sbjct: 61 QIKTWIQSSEIKDKKV 76

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
CNOT3_HUMAN1.6e-2470.67CCR4-NOT transcription complex subunit 3 OS=Homo sapiens GN=CNOT3 PE=1 SV=1[more]
CNOT3_MOUSE1.6e-2470.67CCR4-NOT transcription complex subunit 3 OS=Mus musculus GN=Cnot3 PE=1 SV=1[more]
NOT5_YEAST3.8e-1856.00General negative regulator of transcription subunit 5 OS=Saccharomyces cerevisia... [more]
NOT3_SCHPO5.5e-1754.79General negative regulator of transcription subunit 3 OS=Schizosaccharomyces pom... [more]
NOT3_YEAST6.1e-1654.79General negative regulator of transcription subunit 3 OS=Saccharomyces cerevisia... [more]
Match NameE-valueIdentityDescription
A0A067EVW8_CITSI1.6e-3498.68Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0026781mg PE=4 ... [more]
V4TT72_9ROSI1.6e-3498.68Uncharacterized protein OS=Citrus clementina GN=CICLE_v10018788mg PE=4 SV=1[more]
S8CEU2_9LAMI1.6e-3498.68Uncharacterized protein (Fragment) OS=Genlisea aurea GN=M569_09447 PE=4 SV=1[more]
A0A0K9QPM3_SPIOL1.6e-3498.68Uncharacterized protein OS=Spinacia oleracea GN=SOVF_155610 PE=4 SV=1[more]
A0A0K9QRA1_SPIOL1.6e-3498.68Uncharacterized protein OS=Spinacia oleracea GN=SOVF_155610 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT5G18230.24.3e-3691.86 transcription regulator NOT2/NOT3/NOT5 family protein[more]
Match NameE-valueIdentityDescription
gi|449446768|ref|XP_004141143.1|1.0e-34100.00PREDICTED: general negative regulator of transcription subunit 3 [Cucumis sativu... [more]
gi|764584810|ref|XP_011464447.1|1.0e-3492.68PREDICTED: CCR4-NOT transcription complex subunit 3 isoform X2 [Fragaria vesca s... [more]
gi|659130746|ref|XP_008465329.1|1.0e-34100.00PREDICTED: general negative regulator of transcription subunit 3 [Cucumis melo][more]
gi|764584806|ref|XP_011464446.1|1.0e-3492.68PREDICTED: general negative regulator of transcription subunit 3 isoform X1 [Fra... [more]
gi|971551656|ref|XP_015164528.1|2.2e-3498.68PREDICTED: general negative regulator of transcription subunit 3 isoform X3 [Sol... [more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR007207Not_N
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0017148 negative regulation of translation
biological_process GO:0000288 nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
cellular_component GO:0005634 nucleus
cellular_component GO:0030015 CCR4-NOT core complex
cellular_component GO:0000932 cytoplasmic mRNA processing body
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C026895T1MELO3C026895T1mRNA


Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007207CCR4-Not complex component, Not N-terminal domainPFAMPF04065Not3coord: 4..77
score: 2.4
NoneNo IPR availableunknownCoilCoilcoord: 41..61
scor
NoneNo IPR availablePANTHERPTHR23326CCR4 NOT-RELATEDcoord: 2..75
score: 7.3
NoneNo IPR availablePANTHERPTHR23326:SF1CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT 3coord: 2..75
score: 7.3