MELO3C024924 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C024924
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionDNA topoisomerase 6 subunit A
Locationchr1 : 10433958 .. 10434198 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCTACGATGCAAAGAATCTCAGAATCCCACAACTACAATGGATTGGAGCTTTTGCTTCAGATTCTGAGAAATACGATCTACCAGAACAATGTCTCATCCCATTGACATCCAAGGGTGCGGGATCTCACTTGGCACCCACACGTGCACACACGTACGCAGTGCATTTTCAAATGTCATTTTCTGTATTTCTGATCTGTTGAAGGTCTTGTTTAACCTGTCAGACAAGAGAAGAACTGA

mRNA sequence

ATGGCCTACGATGCAAAGAATCTCAGAATCCCACAACTACAATGGATTGGAGCTTTTGCTTCAGATTCTGAGAAATACGATCTACCAGAACAATGTCTCATCCCATTGACATCCAAGGGTGCGGGATCTCACTTGGCACCCACACGTGCACACACACAAGAGAAGAACTGA

Coding sequence (CDS)

ATGGCCTACGATGCAAAGAATCTCAGAATCCCACAACTACAATGGATTGGAGCTTTTGCTTCAGATTCTGAGAAATACGATCTACCAGAACAATGTCTCATCCCATTGACATCCAAGGGTGCGGGATCTCACTTGGCACCCACACGTGCACACACACAAGAGAAGAACTGA

Protein sequence

MAYDAKNLRIPQLQWIGAFASDSEKYDLPEQCLIPLTSKGAGSHLAPTRAHTQEKN*
Homology
[Close]
BLAST of MELO3C024924 vs. Swiss-Prot
Match: SPO11_ARATH (Meiotic recombination protein SPO11-1 OS=Arabidopsis thaliana GN=SPO11-1 PE=1 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 3.5e-08
Identity = 23/39 (58.97%), Postives = 30/39 (76.92%), Query Frame = 1 

Query: 1   MAYDAKNLRIPQLQWIGAFASDSEKYDLPEQCLIPLTSK 40
           MAYD ++LR P ++W+GAF SDSE Y +P+QCL+PLT +
Sbjct: 260 MAYDIESLRAPDMKWLGAFPSDSEVYSVPKQCLLPLTEE 298

[Close]
BLAST of MELO3C024924 vs. TrEMBL
Match: A0A0D2R3D9_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_002G099100 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 5.8e-10
Identity = 30/40 (75.00%), Postives = 36/40 (90.00%), Query Frame = 1 

Query: 1   MAYDAKNLRIPQLQWIGAFASDSEKYDLPEQCLIPLTSKG 41
           MAYDAK LR+PQ+QW+GAF SDSE YDLP+QCL+PLT +G
Sbjct: 256 MAYDAKFLRVPQIQWLGAFPSDSENYDLPKQCLLPLTIEG 295

[Close]
BLAST of MELO3C024924 vs. TrEMBL
Match: A0A061F4U0_THECC (Spo11/DNA topoisomerase VI OS=Theobroma cacao GN=TCM_030659 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 1.3e-09
Identity = 29/39 (74.36%), Postives = 36/39 (92.31%), Query Frame = 1 

Query: 1   MAYDAKNLRIPQLQWIGAFASDSEKYDLPEQCLIPLTSK 40
           MAYDAK LR+P++QWIGAF SDSE YDLP+QCL+PLT++
Sbjct: 232 MAYDAKLLRVPEIQWIGAFPSDSENYDLPQQCLLPLTTE 270

[Close]
BLAST of MELO3C024924 vs. TrEMBL
Match: B9GFL2_POPTR (DNA topoisomerase VIA family protein OS=Populus trichocarpa GN=POPTR_0001s37540g PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 3.8e-09
Identity = 28/39 (71.79%), Postives = 36/39 (92.31%), Query Frame = 1 

Query: 1   MAYDAKNLRIPQLQWIGAFASDSEKYDLPEQCLIPLTSK 40
           MAYDAK LR+P++QW+GAF SD EKYDLP+QCL+PLT++
Sbjct: 257 MAYDAKILRVPEVQWLGAFPSDFEKYDLPQQCLLPLTAE 295

[Close]
BLAST of MELO3C024924 vs. TrEMBL
Match: W9QQJ3_9ROSA (Meiotic recombination protein SPO11-1 OS=Morus notabilis GN=L484_018233 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 1.1e-08
Identity = 28/39 (71.79%), Postives = 35/39 (89.74%), Query Frame = 1 

Query: 1   MAYDAKNLRIPQLQWIGAFASDSEKYDLPEQCLIPLTSK 40
           MAYDAK LRIP++ W+GAF SDSEKY+LP QCL+PLT++
Sbjct: 271 MAYDAKLLRIPEMNWLGAFPSDSEKYNLPNQCLLPLTAE 309

[Close]
BLAST of MELO3C024924 vs. TrEMBL
Match: A0A022QJM3_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a019434mg PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 1.9e-08
Identity = 26/39 (66.67%), Postives = 35/39 (89.74%), Query Frame = 1 

Query: 1   MAYDAKNLRIPQLQWIGAFASDSEKYDLPEQCLIPLTSK 40
           MAYDAK+LR+P++QW+GAF SD EKY LP+ CL+PLT++
Sbjct: 297 MAYDAKSLRLPEIQWLGAFPSDCEKYQLPQHCLLPLTTE 335

[Close]
BLAST of MELO3C024924 vs. TAIR10
Match: AT3G13170.1 (AT3G13170.1 Spo11/DNA topoisomerase VI, subunit A protein)

HSP 1 Score: 58.2 bits (139), Expect = 2.0e-09
Identity = 23/39 (58.97%), Postives = 30/39 (76.92%), Query Frame = 1 

Query: 1   MAYDAKNLRIPQLQWIGAFASDSEKYDLPEQCLIPLTSK 40
           MAYD ++LR P ++W+GAF SDSE Y +P+QCL+PLT +
Sbjct: 260 MAYDIESLRAPDMKWLGAFPSDSEVYSVPKQCLLPLTEE 298

[Close]
BLAST of MELO3C024924 vs. TAIR10
Match: AT5G02820.1 (AT5G02820.1 Spo11/DNA topoisomerase VI, subunit A protein)

HSP 1 Score: 48.9 bits (115), Expect = 1.2e-06
Identity = 18/39 (46.15%), Postives = 26/39 (66.67%), Query Frame = 1 

Query: 1   MAYDAKNLRIPQLQWIGAFASDSEKYDLPEQCLIPLTSK 40
           M+YD+ NL  P ++W+G   SD +KY +PEQC +P+T +
Sbjct: 327 MSYDSANLTTPDIKWLGIRPSDLDKYKIPEQCRLPMTEQ 365

[Close]
BLAST of MELO3C024924 vs. NCBI nr
Match: gi|659126052|ref|XP_008462990.1| (PREDICTED: meiotic recombination protein SPO11-1 isoform X2 [Cucumis melo])

HSP 1 Score: 84.0 bits (206), Expect = 9.5e-14
Identity = 39/39 (100.00%), Postives = 39/39 (100.00%), Query Frame = 1 

Query: 1   MAYDAKNLRIPQLQWIGAFASDSEKYDLPEQCLIPLTSK 40
           MAYDAKNLRIPQLQWIGAFASDSEKYDLPEQCLIPLTSK
Sbjct: 257 MAYDAKNLRIPQLQWIGAFASDSEKYDLPEQCLIPLTSK 295

[Close]
BLAST of MELO3C024924 vs. NCBI nr
Match: gi|659126054|ref|XP_008462991.1| (PREDICTED: meiotic recombination protein SPO11-1 isoform X3 [Cucumis melo])

HSP 1 Score: 84.0 bits (206), Expect = 9.5e-14
Identity = 39/39 (100.00%), Postives = 39/39 (100.00%), Query Frame = 1 

Query: 1   MAYDAKNLRIPQLQWIGAFASDSEKYDLPEQCLIPLTSK 40
           MAYDAKNLRIPQLQWIGAFASDSEKYDLPEQCLIPLTSK
Sbjct: 260 MAYDAKNLRIPQLQWIGAFASDSEKYDLPEQCLIPLTSK 298

[Close]
BLAST of MELO3C024924 vs. NCBI nr
Match: gi|659126050|ref|XP_008462989.1| (PREDICTED: meiotic recombination protein SPO11-1 isoform X1 [Cucumis melo])

HSP 1 Score: 84.0 bits (206), Expect = 9.5e-14
Identity = 39/39 (100.00%), Postives = 39/39 (100.00%), Query Frame = 1 

Query: 1   MAYDAKNLRIPQLQWIGAFASDSEKYDLPEQCLIPLTSK 40
           MAYDAKNLRIPQLQWIGAFASDSEKYDLPEQCLIPLTSK
Sbjct: 260 MAYDAKNLRIPQLQWIGAFASDSEKYDLPEQCLIPLTSK 298

[Close]
BLAST of MELO3C024924 vs. NCBI nr
Match: gi|763746431|gb|KJB13870.1| (hypothetical protein B456_002G099100 [Gossypium raimondii])

HSP 1 Score: 70.9 bits (172), Expect = 8.4e-10
Identity = 30/40 (75.00%), Postives = 36/40 (90.00%), Query Frame = 1 

Query: 1   MAYDAKNLRIPQLQWIGAFASDSEKYDLPEQCLIPLTSKG 41
           MAYDAK LR+PQ+QW+GAF SDSE YDLP+QCL+PLT +G
Sbjct: 256 MAYDAKFLRVPQIQWLGAFPSDSENYDLPKQCLLPLTIEG 295

[Close]
BLAST of MELO3C024924 vs. NCBI nr
Match: gi|590605586|ref|XP_007020526.1| (Spo11/DNA topoisomerase VI [Theobroma cacao])

HSP 1 Score: 69.7 bits (169), Expect = 1.9e-09
Identity = 29/39 (74.36%), Postives = 36/39 (92.31%), Query Frame = 1 

Query: 1   MAYDAKNLRIPQLQWIGAFASDSEKYDLPEQCLIPLTSK 40
           MAYDAK LR+P++QWIGAF SDSE YDLP+QCL+PLT++
Sbjct: 232 MAYDAKLLRVPEIQWIGAFPSDSENYDLPQQCLLPLTTE 270

The following BLAST results are available for this feature:
BLAST of MELO3C024924 vs. Swiss-Prot
Match NameE-valueIdentityDescription
SPO11_ARATH3.5e-0858.97Meiotic recombination protein SPO11-1 OS=Arabidopsis thaliana GN=SPO11-1 PE=1 SV... [more]
BLAST of MELO3C024924 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0D2R3D9_GOSRA5.8e-1075.00Uncharacterized protein OS=Gossypium raimondii GN=B456_002G099100 PE=4 SV=1[more]
A0A061F4U0_THECC1.3e-0974.36Spo11/DNA topoisomerase VI OS=Theobroma cacao GN=TCM_030659 PE=4 SV=1[more]
B9GFL2_POPTR3.8e-0971.79DNA topoisomerase VIA family protein OS=Populus trichocarpa GN=POPTR_0001s37540g... [more]
W9QQJ3_9ROSA1.1e-0871.79Meiotic recombination protein SPO11-1 OS=Morus notabilis GN=L484_018233 PE=4 SV=... [more]
A0A022QJM3_ERYGU1.9e-0866.67Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a019434mg PE=4 SV=1[more]
BLAST of MELO3C024924 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G13170.12.0e-0958.97 Spo11/DNA topoisomerase VI, subunit A protein[more]
AT5G02820.11.2e-0646.15 Spo11/DNA topoisomerase VI, subunit A protein[more]
BLAST of MELO3C024924 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659126052|ref|XP_008462990.1|9.5e-14100.00PREDICTED: meiotic recombination protein SPO11-1 isoform X2 [Cucumis melo][more]
gi|659126054|ref|XP_008462991.1|9.5e-14100.00PREDICTED: meiotic recombination protein SPO11-1 isoform X3 [Cucumis melo][more]
gi|659126050|ref|XP_008462989.1|9.5e-14100.00PREDICTED: meiotic recombination protein SPO11-1 isoform X1 [Cucumis melo][more]
gi|763746431|gb|KJB13870.1|8.4e-1075.00hypothetical protein B456_002G099100 [Gossypium raimondii][more]
gi|590605586|ref|XP_007020526.1|1.9e-0974.36Spo11/DNA topoisomerase VI [Theobroma cacao][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR002815Spo11/TopoVI_A
Vocabulary: Biological Process
TermDefinition
GO:0000737DNA catabolic process, endonucleolytic
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
Vocabulary: Cellular Component
TermDefinition
GO:0005694chromosome
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0051026 chiasma assembly
biological_process GO:0010332 response to gamma radiation
biological_process GO:0006259 DNA metabolic process
biological_process GO:0044710 single-organism metabolic process
biological_process GO:0019219 regulation of nucleobase-containing compound metabolic process
biological_process GO:0060255 regulation of macromolecule metabolic process
biological_process GO:0045132 meiotic chromosome segregation
biological_process GO:0007127 meiosis I
biological_process GO:0006310 DNA recombination
biological_process GO:0051276 chromosome organization
biological_process GO:0006974 cellular response to DNA damage stimulus
biological_process GO:0031048 chromatin silencing by small RNA
biological_process GO:0016444 somatic cell DNA recombination
biological_process GO:0043247 telomere maintenance in response to DNA damage
biological_process GO:0032204 regulation of telomere maintenance
biological_process GO:0006312 mitotic recombination
biological_process GO:0000737 DNA catabolic process, endonucleolytic
biological_process GO:0000724 double-strand break repair via homologous recombination
biological_process GO:0034090 maintenance of meiotic sister chromatid cohesion
biological_process GO:0007140 male meiosis
biological_process GO:0042138 meiotic DNA double-strand break formation
biological_process GO:0000706 meiotic DNA double-strand break processing
biological_process GO:0030001 metal ion transport
biological_process GO:0032504 multicellular organism reproduction
biological_process GO:0043687 post-translational protein modification
biological_process GO:0045893 positive regulation of transcription, DNA-templated
cellular_component GO:0005634 nucleus
cellular_component GO:0005694 chromosome
molecular_function GO:0046872 metal ion binding
molecular_function GO:0016853 isomerase activity
molecular_function GO:0003677 DNA binding
molecular_function GO:0005524 ATP binding
molecular_function GO:0003824 catalytic activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C024924T1MELO3C024924T1mRNA


InterPro
Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002815Spo11/DNA topoisomerase VI subunit APANTHERPTHR10848MEIOTIC RECOMBINATION PROTEIN SPO11coord: 1..39
score: 1.2
NoneNo IPR availableGENE3DG3DSA:3.40.1360.10coord: 1..39
score: 2.
NoneNo IPR availablePANTHERPTHR10848:SF3SUBFAMILY NOT NAMEDcoord: 1..39
score: 1.2

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
MELO3C024924Cla003301Watermelon (97103) v1mewmB185
MELO3C024924ClCG09G021210Watermelon (Charleston Gray)mewcgB163
MELO3C024924Cucsa.279500Cucumber (Gy14) v1cgymeB466
MELO3C024924CmaCh09G010030Cucurbita maxima (Rimu)cmameB014
MELO3C024924CmoCh09G010040Cucurbita moschata (Rifu)cmomeB003
MELO3C024924Lsi02G018410Bottle gourd (USVL1VR-Ls)lsimeB193
MELO3C024924Cp4.1LG06g08550Cucurbita pepo (Zucchini)cpemeB710
MELO3C024924CsaV3_7G017260Cucumber (Chinese Long) v3cucmeB556
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C024924Cucurbita maxima (Rimu)cmameB401
MELO3C024924Cucurbita moschata (Rifu)cmomeB392
MELO3C024924Cucurbita pepo (Zucchini)cpemeB498
MELO3C024924Cucumber (Gy14) v2cgybmeB475
MELO3C024924Silver-seed gourdcarmeB0871
MELO3C024924Silver-seed gourdcarmeB0889
MELO3C024924Watermelon (97103) v2mewmbB210
MELO3C024924Wax gourdmewgoB240